>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor|
          Length = 1093

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 177 LNYQT*KANSPSRCSYLPQN*SGSVISRVFESYTITVLQFA 299
           L+  T K N  +RC Y P++ S +VIS   E Y  TV+ F+
Sbjct: 158 LSRTTEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFS 198

>RPA9_YEAST (P32529) DNA-directed RNA polymerase I 13.7 kDa polypeptide (EC|
           2.7.7.6) (A12.2)
          Length = 125

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 415 INDVLIXKGPCPNCGTENLSFYGTILSIESGGATNNVKCANC 290
           + D    K  CP CG E ++++   L     GAT    C +C
Sbjct: 76  LKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117

>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)|
          Length = 1093

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 195 KANSPSRCSYLPQN*SGSVISRVFESYTITVLQFA 299
           K N  +RC Y P++ S +VIS   E Y  TV+ F+
Sbjct: 164 KINGVARCPYDPRHNSTAVISSQGELYAATVIDFS 198

>RS27_SULTO (Q973F9) 30S ribosomal protein S27e|
          Length = 66

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 385 CPNCGTENLSFYGTILSIESGGATNNVKCANCKTVMVY 272
           CPNCG E   F           AT  V+C +C T +VY
Sbjct: 21  CPNCGNEQTVF---------SHATFPVRCLSCGTQLVY 49

>RS27_SULSO (Q97Z80) 30S ribosomal protein S27e|
          Length = 66

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 385 CPNCGTENLSFYGTILSIESGGATNNVKCANCKTVMVY 272
           CPNCG E   F           AT  V+C +C T +VY
Sbjct: 21  CPNCGNEQTIF---------SHATFPVRCLSCGTELVY 49

>RPA12_MACMU (Q5TM50) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)|
           (Nuclear RNA polymerase I small specific subunit Rpa12)
           (Zinc ribbon domain-containing protein 1)
          Length = 126

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 385 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 287
           CP CG E ++++   +     G T    C NCK
Sbjct: 87  CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119

>RPA12_HUMAN (Q9P1U0) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)|
           (Nuclear RNA polymerase I small specific subunit Rpa12)
           (Zinc ribbon domain-containing protein 1)
          Length = 126

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 385 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 287
           CP CG E ++++   +     G T    C NCK
Sbjct: 87  CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119

>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1156

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 454 LILVTAQVVTKAIINDVLIXKGPCPNCGTENLSFYGTILSIESGGATNNV------KCAN 293
           +ILV  ++    +I +++  KG   +  TEN+ +YG    +E G    N       KC N
Sbjct: 609 IILVNDEI----LITNIIATKGHITDLTTENIGYYG----VEVGNNEFNAYYSPIYKCYN 660

Query: 292 CKTVMVYDSKT 260
           C       S T
Sbjct: 661 CGKTFTIKSNT 671

>RPA12_MOUSE (Q791N7) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)|
           (Nuclear RNA polymerase I small specific subunit Rpa12)
           (Zinc ribbon domain-containing protein 1)
          Length = 123

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 385 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 287
           CP CG E ++++   +     G T    C NCK
Sbjct: 84  CPRCGHEGMAYHTRQMRSADEGQTVFYTCINCK 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,856,333
Number of Sequences: 219361
Number of extensions: 1017524
Number of successful extensions: 2353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)