| Clone Name | rbags8o07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104225.1| Zea mays PCO144800 mRNA sequence Length = 939 Score = 77.8 bits (39), Expect = 3e-11 Identities = 128/158 (81%) Strand = Plus / Minus Query: 246 agtgtgatcagccgagtttttgagtcgtataccatcacggttttgcaatttgcgcacttc 305 |||||||||| ||||| ||||||||| ||| ||| | |||| |||||||||| || ||| Sbjct: 561 agtgtgatcacccgagattttgagtcatattccagctcggtactgcaatttgcacatttc 502 Query: 306 acgttgttcgtcgcaccgccgctctcgatcgacagtattgtcccgtagaaggaaagattt 365 || ||||| || | |||||| || || |||||||| ||||| |||||||||| ||| Sbjct: 501 actttgtttgttgtaccgccactggagactgacagtatagtcccaaagaaggaaaggttt 442 Query: 366 tcagtaccgcaattcggacaaggtcccttcangattaa 403 |||||||| ||||| ||||| || ||||| | |||||| Sbjct: 441 tcagtaccacaattaggacatggccccttaaggattaa 404
>ref|XM_470484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1318 Score = 54.0 bits (27), Expect = 4e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 ||||| || |||||| |||||||||| ||||||| || ||||||||||| || ||||| Sbjct: 933 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggacatggccccttg 874 Query: 396 angattaaga 405 | |||||||| Sbjct: 873 aggattaaga 864
>dbj|AK098951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N16, full insert sequence Length = 1342 Score = 54.0 bits (27), Expect = 4e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 ||||| || |||||| |||||||||| ||||||| || ||||||||||| || ||||| Sbjct: 957 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggacatggccccttg 898 Query: 396 angattaaga 405 | |||||||| Sbjct: 897 aggattaaga 888
>dbj|AK062137.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F08, full insert sequence Length = 1358 Score = 54.0 bits (27), Expect = 4e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 ||||| || |||||| |||||||||| ||||||| || ||||||||||| || ||||| Sbjct: 954 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggacatggccccttg 895 Query: 396 angattaaga 405 | |||||||| Sbjct: 894 aggattaaga 885
>ref|XM_507596.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_A10.128 mRNA Length = 1442 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 396 a 396 | Sbjct: 988 a 988
>ref|XM_483430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1442 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 396 a 396 | Sbjct: 988 a 988
>ref|XM_507301.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_A10.128 mRNA Length = 1445 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 396 a 396 | Sbjct: 988 a 988
>dbj|AK121104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069O17, full insert sequence Length = 3855 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 3490 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 3431 Query: 396 a 396 | Sbjct: 3430 a 3430
>dbj|AK104593.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B08, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 984 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 925 Query: 396 a 396 | Sbjct: 924 a 924
>dbj|AK070382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052D06, full insert sequence Length = 1445 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 1048 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 989 Query: 396 a 396 | Sbjct: 988 a 988
>dbj|AK061736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D09, full insert sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtcccttc 395 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||||| Sbjct: 984 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtcccttc 925 Query: 396 a 396 | Sbjct: 924 a 924
>dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CCR5, CCRL2, LTF, TMEM7, LRRC2), complete cds, clone: 0475A03 Length = 165558 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 100 atatctacagcaaaatcatacta 122 ||||||||||||||||||||||| Sbjct: 79051 atatctacagcaaaatcatacta 79073
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Plus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggaca 385 ||||| || |||||| |||||||||| ||||||| || ||||||||||| Sbjct: 35877237 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggaca 35877286
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggaca 385 ||||| || |||||| |||||||||| ||||||| || ||||||||||| Sbjct: 83888 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggaca 83839
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.39 Identities = 49/58 (84%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtccct 393 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||| Sbjct: 26176707 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtccct 26176650 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 336 gacagtattgtcccgtagaaggaaagattttca 368 |||||||| ||||| ||||||||||||||||| Sbjct: 13094986 gacagtatagtcccaaagaaggaaagattttca 13095018
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Plus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggaca 385 ||||| || |||||| |||||||||| ||||||| || ||||||||||| Sbjct: 35967367 gacaggatagtcccgaagaaggaaaggttttcagcgccacaattcggaca 35967416
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 44.1 bits (22), Expect = 0.39 Identities = 49/58 (84%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtccct 393 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||| Sbjct: 120638 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtccct 120581
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 44.1 bits (22), Expect = 0.39 Identities = 49/58 (84%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttcagtaccgcaattcggacaaggtccct 393 |||||||| ||||| ||||||||||||||||| | || || ||||| || ||||||| Sbjct: 9632 gacagtatagtcccaaagaaggaaagattttcattgccacagttcgggcacggtccct 9575
>ref|XM_481498.1| Oryza sativa (japonica cultivar-group), mRNA Length = 612 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttca 368 |||||||| ||||| ||||||||||||||||| Sbjct: 500 gacagtatagtcccaaagaaggaaagattttca 468
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24, complete sequence Length = 150085 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 336 gacagtattgtcccgtagaaggaaagattttca 368 |||||||| ||||| ||||||||||||||||| Sbjct: 88465 gacagtatagtcccaaagaaggaaagattttca 88433
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 336 gacagtattgtcccgtagaaggaaagattttca 368 |||||||| ||||| ||||||||||||||||| Sbjct: 75506 gacagtatagtcccaaagaaggaaagattttca 75538
>ref|NM_179091.1| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.2 mRNA, complete cds Length = 1092 Score = 40.1 bits (20), Expect = 6.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 375 caattcggacaaggtcccttcangattaaga 405 |||||||||||||| ||||||| ||| |||| Sbjct: 910 caattcggacaaggacccttcaagatcaaga 880
>ref|NM_179092.1| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.3 mRNA, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 6.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 375 caattcggacaaggtcccttcangattaaga 405 |||||||||||||| ||||||| ||| |||| Sbjct: 995 caattcggacaaggacccttcaagatcaaga 965
>ref|NM_118418.2| Arabidopsis thaliana unknown protein AT4G22890 transcript variant AT4G22890.1 mRNA, complete cds Length = 1417 Score = 40.1 bits (20), Expect = 6.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 375 caattcggacaaggtcccttcangattaaga 405 |||||||||||||| ||||||| ||| |||| Sbjct: 995 caattcggacaaggacccttcaagatcaaga 965
>gb|BT000905.1| Arabidopsis thaliana clone C105179 unknown protein (At4g22890) mRNA, complete cds Length = 1006 Score = 40.1 bits (20), Expect = 6.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 375 caattcggacaaggtcccttcangattaaga 405 |||||||||||||| ||||||| ||| |||| Sbjct: 824 caattcggacaaggacccttcaagatcaaga 794
>emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20 on chromosome Xq22.2-22.3, complete sequence Length = 167943 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ttgcagacttgacaattcca 168 |||||||||||||||||||| Sbjct: 58135 ttgcagacttgacaattcca 58116
>gb|AY050904.1| Arabidopsis thaliana At4g22890 mRNA sequence Length = 1327 Score = 40.1 bits (20), Expect = 6.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 375 caattcggacaaggtcccttcangattaaga 405 |||||||||||||| ||||||| ||| |||| Sbjct: 888 caattcggacaaggacccttcaagatcaaga 858
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caaaatcatactacaacaca 129 |||||||||||||||||||| Sbjct: 54501 caaaatcatactacaacaca 54520
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence Length = 126659 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caaaatcatactacaacaca 129 |||||||||||||||||||| Sbjct: 90087 caaaatcatactacaacaca 90106
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caaaatcatactacaacaca 129 |||||||||||||||||||| Sbjct: 32695066 caaaatcatactacaacaca 32695085
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agtttcattcatgccaatca 81 |||||||||||||||||||| Sbjct: 4333839 agtttcattcatgccaatca 4333820
>gb|AY088992.1| Arabidopsis thaliana clone 13264 mRNA, complete sequence Length = 1321 Score = 40.1 bits (20), Expect = 6.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 375 caattcggacaaggtcccttcangattaaga 405 |||||||||||||| ||||||| ||| |||| Sbjct: 993 caattcggacaaggacccttcaagatcaaga 963
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agtttcattcatgccaatca 81 |||||||||||||||||||| Sbjct: 36657 agtttcattcatgccaatca 36638
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 agtttcattcatgccaatca 81 |||||||||||||||||||| Sbjct: 157598 agtttcattcatgccaatca 157579
>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete sequence Length = 76529 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caaaatcatactacaacaca 129 |||||||||||||||||||| Sbjct: 27316 caaaatcatactacaacaca 27335
>emb|BX544885.3| Mouse DNA sequence from clone RP23-402E14 on chromosome 4, complete sequence Length = 49635 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctaggttttctatacatgca 62 |||||||||||||||||||| Sbjct: 17575 ctaggttttctatacatgca 17556
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 acttcacgttgttcgtcgca 320 |||||||||||||||||||| Sbjct: 701595 acttcacgttgttcgtcgca 701576 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,528,749 Number of Sequences: 3902068 Number of extensions: 3528749 Number of successful extensions: 147291 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147147 Number of HSP's gapped (non-prelim): 144 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)