ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8o06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein... 100 1e-17
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
3dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
5gb|AY103994.1| Zea mays PCO089335 mRNA sequence 96 2e-16
6gb|AY103919.1| Zea mays PCO099246 mRNA sequence 52 0.002
7gb|AF057522.1|AF057522 Zea mays hypoxically induced transcript 2... 52 0.002
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
9dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
10gb|BT017942.1| Zea mays clone EL01N0521C02.c mRNA sequence 42 2.2
11gb|AC034159.7| Homo sapiens BAC clone RP11-344G13 from 4, comple... 42 2.2
12emb|AJ414553.1|BPR414553 Beta procumbens repeat element AluI fam... 42 2.2
13emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on ch... 42 2.2
14emb|AJ438178.1|BPR438178 Beta procumbens retrotransposon Athila-... 42 2.2
15gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, co... 40 8.9
16gb|BC068781.1| Xenopus laevis hypothetical protein MGC81311, mRN... 40 8.9
17gb|BC043764.1| Xenopus laevis similar to serine/threonine protei... 40 8.9
18gb|AC095055.3| Homo sapiens BAC clone RP11-372K14 from 4, comple... 40 8.9
19gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 8.9
20emb|BX649208.1| Mouse DNA sequence from clone RP24-190F19 on chr... 40 8.9
21gb|AY786992.1| Azospirillum lipoferum nitrogenase subunit NifH (... 40 8.9
22gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.9
23emb|AL731795.11| Mouse DNA sequence from clone RP23-123M13 on ch... 40 8.9 
>gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein mRNA, complete cds
          Length = 1119

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                        
Query: 313  aaaacctcttgcaatcctacccacaactttctggttcttaggatctgcagggacctgagc 372
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||
Sbjct: 1035 aaaacctcttgcaatcctacccacaactgtctggttcataggatctgcagggagctaagc 976

                                  
Query: 373  agggaaaaaatagagctctcaa 394
            |||  |||| |||| |||||||
Sbjct: 975  aggagaaaactagaactctcaa 954



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                       
Query: 563 ttggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatga 622
           |||||||||||||||| |  ||||||||||||||||| | || |||||||||||||||||
Sbjct: 797 ttggttaacaatgtgaagctgtcaggtgcttcaagcttgagatgtcgaacagctccatga 738

                                        
Query: 623 atctcaggtcggtgctcctcactttcgca 651
           ||||| | |||||||||||| | ||||||
Sbjct: 737 atctctgatcggtgctcctcgccttcgca 709



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 248  gcaatgctgctcgagtacagagcttcagtacccgaaaacaa-tggtgaattcatcgcaag 306
            ||||||||||||||||||||   |||||||||||||||||| |||||||||| |||||||
Sbjct: 1119 gcaatgctgctcgagtacag-ctttcagtacccgaaaacaattggtgaattcctcgcaag 1061

             
Query: 307  a 307
            |
Sbjct: 1060 a 1060



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 445 ttcattctacgggttccaaaaattattcactgctga 480
           ||||||||||||||||| ||||||||||||||||||
Sbjct: 921 ttcattctacgggttcc-aaaattattcactgctga 887
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                           
Query: 313     aaaacctcttgcaatcctacccacaactttctggttcttaggatctgcagggacctgagc 372
               |||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||
Sbjct: 5569781 aaaacctcttgcaatcctacccacaactgtctggttcataggatctgcagggagctaagc 5569722

                                     
Query: 373     agggaaaaaatagagctctcaa 394
               |||  |||| |||| |||||||
Sbjct: 5569721 aggagaaaactagaactctcaa 5569700



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                           
Query: 563     ttggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatga 622
               |||||||||||||||| |  ||||||||||||||||| | || |||||||||||||||||
Sbjct: 5569543 ttggttaacaatgtgaagctgtcaggtgcttcaagcttgagatgtcgaacagctccatga 5569484

                                            
Query: 623     atctcaggtcggtgctcctcactttcgca 651
               ||||| | |||||||||||| | ||||||
Sbjct: 5569483 atctctgatcggtgctcctcgccttcgca 5569455



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 57/62 (91%), Gaps = 2/62 (3%)
 Strand = Plus / Minus

                                                                           
Query: 247     agcaatgctgctcgagtacagagcttcagtacccgaaaacaa-tggtgaattcatcgcaa 305
               |||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||||
Sbjct: 5569866 agcaatgctgctcgagtacag-ctttcagtacccgaaaacaattggtgaattcctcgcaa 5569808

                 
Query: 306     ga 307
               ||
Sbjct: 5569807 ga 5569806



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                   
Query: 445     ttcattctacgggttccaaaaattattcactgctga 480
               ||||||||||||||||| ||||||||||||||||||
Sbjct: 5569667 ttcattctacgggttcc-aaaattattcactgctga 5569633
to top
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                          
Query: 313    aaaacctcttgcaatcctacccacaactttctggttcttaggatctgcagggacctgagc 372
              |||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||
Sbjct: 116689 aaaacctcttgcaatcctacccacaactgtctggttcataggatctgcagggagctaagc 116630

                                    
Query: 373    agggaaaaaatagagctctcaa 394
              |||  |||| |||| |||||||
Sbjct: 116629 aggagaaaactagaactctcaa 116608



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                          
Query: 563    ttggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatga 622
              |||||||||||||||| |  ||||||||||||||||| | || |||||||||||||||||
Sbjct: 116451 ttggttaacaatgtgaagctgtcaggtgcttcaagcttgagatgtcgaacagctccatga 116392

                                           
Query: 623    atctcaggtcggtgctcctcactttcgca 651
              ||||| | |||||||||||| | ||||||
Sbjct: 116391 atctctgatcggtgctcctcgccttcgca 116363



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 57/62 (91%), Gaps = 2/62 (3%)
 Strand = Plus / Minus

                                                                          
Query: 247    agcaatgctgctcgagtacagagcttcagtacccgaaaacaa-tggtgaattcatcgcaa 305
              |||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||||
Sbjct: 116774 agcaatgctgctcgagtacag-ctttcagtacccgaaaacaattggtgaattcctcgcaa 116716

                
Query: 306    ga 307
              ||
Sbjct: 116715 ga 116714



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 445    ttcattctacgggttccaaaaattattcactgctga 480
              ||||||||||||||||| ||||||||||||||||||
Sbjct: 116575 ttcattctacgggttcc-aaaattattcactgctga 116541
to top
>dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L18, full
            insert sequence
          Length = 3738

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                        
Query: 313  aaaacctcttgcaatcctacccacaactttctggttcttaggatctgcagggacctgagc 372
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||
Sbjct: 3628 aaaacctcttgcaatcctacccacaactgtctggttcataggatctgcagggagctaagc 3569

                                  
Query: 373  agggaaaaaatagagctctcaa 394
            |||  |||| |||| |||||||
Sbjct: 3568 aggagaaaactagaactctcaa 3547



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                        
Query: 563  ttggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatga 622
            |||||||||||||||| |  ||||||||||||||||| | || |||||||||||||||||
Sbjct: 3390 ttggttaacaatgtgaagctgtcaggtgcttcaagcttgagatgtcgaacagctccatga 3331

                                         
Query: 623  atctcaggtcggtgctcctcactttcgca 651
            ||||| | |||||||||||| | ||||||
Sbjct: 3330 atctctgatcggtgctcctcgccttcgca 3302



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 57/62 (91%), Gaps = 2/62 (3%)
 Strand = Plus / Minus

                                                                        
Query: 247  agcaatgctgctcgagtacagagcttcagtacccgaaaacaa-tggtgaattcatcgcaa 305
            |||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||||
Sbjct: 3713 agcaatgctgctcgagtacag-ctttcagtacccgaaaacaattggtgaattcctcgcaa 3655

              
Query: 306  ga 307
            ||
Sbjct: 3654 ga 3653



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 445  ttcattctacgggttccaaaaattattcactgctga 480
            ||||||||||||||||| ||||||||||||||||||
Sbjct: 3514 ttcattctacgggttcc-aaaattattcactgctga 3480
to top
>gb|AY103994.1| Zea mays PCO089335 mRNA sequence
          Length = 730

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                       
Query: 565 ggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatgaat 624
           ||||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 274 ggttaacaatgtgagggtgtcaggtgcttcaagcttgagacgtcgaacagctccatgaat 215

                   
Query: 625 ctcaggtc 632
           ||| ||||
Sbjct: 214 ctctggtc 207



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 269 gcttcagtacccgaaaacaatggtgaattcatcgc 303
           |||||||||||| |||||||||| |||||| ||||
Sbjct: 558 gcttcagtacccaaaaacaatggcgaattcctcgc 524



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 463 aaaattattcactgctgagtcggttcagt 491
           |||||||||||| ||||| ||||||||||
Sbjct: 370 aaaattattcacggctgaatcggttcagt 342
to top
>gb|AY103919.1| Zea mays PCO099246 mRNA sequence
          Length = 1461

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 585 caggtgcttcaagctcgcgacgtcgaacagctccatgaatctcaggtcggtgctcctc 642
           ||||||| |||||||||   | ||||||||||||||||| ||| |||| |||||||||
Sbjct: 90  caggtgcgtcaagctcgaagcatcgaacagctccatgaacctctggtcagtgctcctc 147
to top
>gb|AF057522.1|AF057522 Zea mays hypoxically induced transcript 2 (HIT2) mRNA, partial cds
          Length = 312

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 605 cgtcgaacagctccatgaatctcaggtcggtgctcctc 642
           ||||||||||||||||||| ||| |||||||| |||||
Sbjct: 300 cgtcgaacagctccatgaacctctggtcggtggtcctc 263
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 565      ggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatgaat 624
                |||||||| |||||||  ||||||||| ||||||| |    ||| |||||||||||||||
Sbjct: 32556853 ggttaacactgtgaggccgtcaggtgcatcaagctggatgtgtcaaacagctccatgaat 32556912

                   
Query: 625      ctc 627
                |||
Sbjct: 32556913 ctc 32556915
to top
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1353_F08
          Length = 101988

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 565   ggttaacaatgtgaggtggtcaggtgcttcaagctcgcgacgtcgaacagctccatgaat 624
             |||||||| |||||||  ||||||||| ||||||| |    ||| |||||||||||||||
Sbjct: 53826 ggttaacactgtgaggccgtcaggtgcatcaagctggatgtgtcaaacagctccatgaat 53885

                
Query: 625   ctc 627
             |||
Sbjct: 53886 ctc 53888
to top
>gb|BT017942.1| Zea mays clone EL01N0521C02.c mRNA sequence
          Length = 243

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 247 agcaatgctgctcgagtacagagcttcagtacccgaaaacaatgg 291
           ||||| |||||||||||||   |||||||||||| ||||||||||
Sbjct: 177 agcaaagctgctcgagtacct-gcttcagtacccaaaaacaatgg 134
to top
>gb|AC034159.7| Homo sapiens BAC clone RP11-344G13 from 4, complete sequence
          Length = 202555

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  ttgtatgtgtgccaatgccag 165
            |||||||||||||||||||||
Sbjct: 8137 ttgtatgtgtgccaatgccag 8117
to top
>emb|AJ414553.1|BPR414553 Beta procumbens repeat element AluI family pAp22, clone pAp22
          Length = 582

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 399 ttcttcaatcttctgttttgc 419
           |||||||||||||||||||||
Sbjct: 286 ttcttcaatcttctgttttgc 266
to top
>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete
             sequence
          Length = 209714

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   ttactcattaagttgtatgtg 153
             |||||||||||||||||||||
Sbjct: 72556 ttactcattaagttgtatgtg 72536
to top
>emb|AJ438178.1|BPR438178 Beta procumbens retrotransposon Athila-like Ty3-gypsy
          Length = 2110

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 399 ttcttcaatcttctgttttgc 419
           |||||||||||||||||||||
Sbjct: 286 ttcttcaatcttctgttttgc 266
to top
>gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, complete sequence
          Length = 174746

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    gtggtcaggtgcttcaagct 599
              ||||||||||||||||||||
Sbjct: 125792 gtggtcaggtgcttcaagct 125811
to top
>gb|BC068781.1| Xenopus laevis hypothetical protein MGC81311, mRNA (cDNA clone
            MGC:81311 IMAGE:6632546), complete cds
          Length = 3794

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 396  ttcttcttcaatcttctgtt 415
            ||||||||||||||||||||
Sbjct: 2801 ttcttcttcaatcttctgtt 2782
to top
>gb|BC043764.1| Xenopus laevis similar to serine/threonine protein kinase TAO1, mRNA
            (cDNA clone MGC:52943 IMAGE:4930266), complete cds
          Length = 3489

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 396  ttcttcttcaatcttctgtt 415
            ||||||||||||||||||||
Sbjct: 2909 ttcttcttcaatcttctgtt 2890
to top
>gb|AC095055.3| Homo sapiens BAC clone RP11-372K14 from 4, complete sequence
          Length = 183478

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 305    agaaaaagaaaacctcttgcaatc 328
              ||||||||||||||||||| ||||
Sbjct: 104113 agaaaaagaaaacctcttgtaatc 104136
to top
>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   gcaaagaagagccaagctct 240
             ||||||||||||||||||||
Sbjct: 52057 gcaaagaagagccaagctct 52038
to top
>emb|BX649208.1| Mouse DNA sequence from clone RP24-190F19 on chromosome 2, complete
             sequence
          Length = 43695

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   aagaaaaagaaaacctcttg 323
             ||||||||||||||||||||
Sbjct: 30350 aagaaaaagaaaacctcttg 30369
to top
>gb|AY786992.1| Azospirillum lipoferum nitrogenase subunit NifH (nifH) gene, partial
            cds; DraT (draT), DraG (draG), ArsC, Glutamine
            amidotransferases class-II (YafJ-like), AcpD, nucleoside
            phosphorylase, signal recognition particle GTPase, and
            MiaB (miaB) genes, complete cds; and DapF (dapF) gene,
            partial cds
          Length = 11856

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 527  ctgggaggacggcgggggcg 546
            ||||||||||||||||||||
Sbjct: 2433 ctgggaggacggcgggggcg 2452
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    ttcttcaatcttctgttttg 418
              ||||||||||||||||||||
Sbjct: 720356 ttcttcaatcttctgttttg 720375
to top
>emb|AL731795.11| Mouse DNA sequence from clone RP23-123M13 on chromosome 2, complete
             sequence
          Length = 177282

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 216   ttcatgcaaagaagagccaagctc 239
             |||||||||||||| |||||||||
Sbjct: 56722 ttcatgcaaagaagcgccaagctc 56745


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,945,703
Number of Sequences: 3902068
Number of extensions: 5945703
Number of successful extensions: 119680
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 119518
Number of HSP's gapped (non-prelim): 156
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top