ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8o05 |
|---|---|
| Clone Library Name | barley_pub |
>PAHX_HUMAN (O14832) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 53.5 bits (127), Expect = 5e-07 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%) Frame = -2 Query: 624 IQSMYIFKQPGIGGEVVPHQDNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 457 + +M I K P G + H + L+ P + L W A+E + NGCL +PG+H Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTH 213 Query: 456 KNGLK-RRMIRDENGTH--FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPV 286 K LK + E G + F + K V L M+ GD V H L+H S +N + Sbjct: 214 KGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 273 Query: 285 SRHALSLH 262 R A+S H Sbjct: 274 FRKAISCH 281
>PAHX_CAEEL (O62515) Probable phytanoyl-CoA dioxygenase (EC 1.14.11.18)| (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 312 Score = 51.2 bits (121), Expect = 3e-06 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Frame = -2 Query: 570 HQDNTFLYTEP---LSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDR 400 HQD + P + C W A+E T NGCL +PG+HK L G Sbjct: 142 HQDLQYFPFRPADFICCA--WTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNKA 199 Query: 399 PSPLYDQKEFVP---LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEGCKWSK 229 + D P +EM+ GD V H L+H S N + R A+S H + + C++ Sbjct: 200 YHGIQDYDTSTPRIHVEMEPGDTVFFHPILIHGSGANRTEGFRKAISCHYANDDLCRYVN 259 Query: 228 DNWIQRKTAPEPL 190 ++T E + Sbjct: 260 VEGTTQETLAEEI 272
>PAHX_MOUSE (O35386) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) (Lupus nephritis-associated peptide 1) Length = 338 Score = 50.4 bits (119), Expect = 4e-06 Identities = 42/134 (31%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Frame = -2 Query: 624 IQSMYIFKQPGIGGEVVPHQDNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 457 + M I K P +G + H + L+ P + L W A+E NGCL +PG+H Sbjct: 154 LHGMLINKPPDVGKKTSRHPLHQDLHYFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTH 213 Query: 456 KNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSF 304 K LK + E G + +D SP V L M+ GD V H L+H S Sbjct: 214 KGTLKPHDYPKWEGGVNKMYHGIQDYDPNSPR------VHLVMEKGDTVFFHPLLIHGSG 267 Query: 303 ENLSPVSRHALSLH 262 N + R A+S H Sbjct: 268 RNKTQGFRKAISCH 281
>PAHX_RAT (P57093) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 49.3 bits (116), Expect = 1e-05 Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 13/143 (9%) Frame = -2 Query: 624 IQSMYIFKQPGIGGEVVPHQDNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 457 + +M I K P G + H + L+ P + L W A+E NGCL +PG+H Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHFFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTH 213 Query: 456 KNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSF 304 K LK + E G + +D SP V L M+ GD V H L+H S Sbjct: 214 KGPLKPHDYPKWEGGVNKMYHGIQDYDPDSPR------VHLVMEKGDTVFFHPLLIHGSG 267 Query: 303 ENLSPVSRHALSLHVVDMEGCKW 235 N + R A+S H + CK+ Sbjct: 268 RNRTQGFRKAISCHYGSSD-CKY 289
>PAHX_BOVIN (O18778) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 337 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Frame = -2 Query: 570 HQD-NTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRD-ENGTH--FD 403 HQD + F + S W A+E NGCL +PG+HK L+ E G + F Sbjct: 175 HQDLHYFPFRPSNSIVCAWTAMEHIDRNNGCLVVLPGTHKGPLQPHDYPQWEGGVNIMFH 234 Query: 402 RPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVD 253 V L M+ GD V H L+H S N S R A+S H D Sbjct: 235 GIQDYDKNNARVHLVMEKGDTVFFHPLLIHGSGRNKSQGFRKAISCHFAD 284
>Y3657_MYCBO (P67773) Hypothetical protein Mb3657| Length = 291 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/94 (31%), Positives = 48/94 (51%) Frame = -2 Query: 543 EPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP 364 +PL C L +AL D T NG +PGSH+ +RPSP Y + + P Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--P 183 Query: 363 LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 262 +E+ +GD ++ +G L H + N + R AL+++ Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>Y3633_MYCTU (P67772) Hypothetical protein Rv3633/MT3735| Length = 291 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/94 (31%), Positives = 48/94 (51%) Frame = -2 Query: 543 EPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP 364 +PL C L +AL D T NG +PGSH+ +RPSP Y + + P Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--P 183 Query: 363 LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 262 +E+ +GD ++ +G L H + N + R AL+++ Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>Y1539_MYCBO (P67771) Hypothetical protein Mb1539| Length = 273 Score = 33.9 bits (76), Expect = 0.43 Identities = 22/101 (21%), Positives = 40/101 (39%) Frame = -2 Query: 570 HQDNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSP 391 HQD + + ++ + A++ T G +PGSH+ ++P Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDH 171 Query: 390 LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALS 268 Y + VP++ +G V L H + N S R A++ Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
>Y1501_MYCTU (P67770) Hypothetical protein Rv1501/MT1550| Length = 273 Score = 33.9 bits (76), Expect = 0.43 Identities = 22/101 (21%), Positives = 40/101 (39%) Frame = -2 Query: 570 HQDNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSP 391 HQD + + ++ + A++ T G +PGSH+ ++P Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDH 171 Query: 390 LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALS 268 Y + VP++ +G V L H + N S R A++ Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
>CFT2_YEAST (Q12102) Protein CFT2 (Cleavage factor two protein 2) (105 kDa| protein associated with polyadenylation factor I) Length = 859 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +2 Query: 68 NEEKTALLRSLPKFHCAE--DKQLELLAGDISFISNWLN*DTYSGSGAVFLC 217 N EKT L+ + P F CA DK LE++ D NW T+ G FLC Sbjct: 358 NSEKTTLILTKPSFECASSLDKILEIVEQD---ERNW---KTFPEDGKSFLC 403
>ECTD_BORBR (Q7WHJ0) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 31.6 bits (70), Expect = 2.1 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 16/102 (15%) Frame = -2 Query: 537 LSCTGLWLALEDATTTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP 391 LSC+ L L D TNG L +PGSH+ + K+ + + E G P P Sbjct: 166 LSCSVL---LTDNNETNGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDP 218 Query: 390 -----LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSR 280 L +Q + K+G V + +H S N+SP R Sbjct: 219 VSLQLLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260
>NQO3_THET8 (Q56223) NADH-quinone oxidoreductase subunit 3 (EC 1.6.99.5) (NADH| dehydrogenase I chain 3) (NDH-1 subunit 3) Length = 783 Score = 31.2 bits (69), Expect = 2.8 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = -2 Query: 468 PGSHKNGLKRR-MIRDENGTHFDRPSPLYDQKEFVPLE--MKSGDFVVIHGDLVHQSFEN 298 P ++ GL+ ++ G +D P LY FVP E +K FVV+H +H E Sbjct: 537 PAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAER 596 Query: 297 LSPVSRHALSL-----HVVDMEG 244 + V A + H+V++EG Sbjct: 597 YAHVVLPAPTFYEKRGHLVNLEG 619
>SYV_HELHP (Q7VHN2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +1 Query: 397 GTIKMSAIFIPDHSPFQTIFM*SGNCP*ATIGCCCIFKRKPQSCAGQRLCIKKCII 564 G+ + IF+ ++PF+ + C A + CI ++KP+ C G +C I Sbjct: 770 GSTNIECIFVKLNAPFEHSLLEQFVCKLAKVKTLCITQQKPKDCVGDVSKYCECYI 825
>GLGB_SYNPX (Q7U646) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 775 Score = 30.8 bits (68), Expect = 3.6 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 2/101 (1%) Frame = -2 Query: 486 GCLWA--IPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVH 313 G +W IPG + L + IR ++G + + P Q E P Sbjct: 172 GGIWELFIPGLAEGSLYKYEIRTQDGHCYQKADPYGFQHEVRP----------------- 214 Query: 312 QSFENLSPVSRHALSLHVVDMEGCKWSKDNWIQRKTAPEPL 190 +N S V+R ++G +WS +W+QR+ + PL Sbjct: 215 ---DNSSVVAR---------LDGFQWSDGSWMQRRDSSNPL 243
>MRE11_METTH (O26641) DNA double-strand break repair protein mre11| Length = 587 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -2 Query: 354 KSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEG 244 K DF++I GDL H + N+ V R L L V G Sbjct: 207 KDVDFMIIAGDLFHSNIPNMETVKRATLELRRVREAG 243
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 30.4 bits (67), Expect = 4.8 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -2 Query: 489 NGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGD 322 N LW I G+ K+ ++ I G H+D + D E P +++ DF ++H D Sbjct: 156 NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSE-APAHLQT-DFQMLHQD 209
>MQO1_PSEAE (Q9HYF4) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 523 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = -2 Query: 576 VPHQDNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNG 448 VPH D + +P+ G + NG LW +PGS +G Sbjct: 321 VPHLDTRMIDGKPVLLFGPFATFSTKFLKNGSLWDLPGSVTSG 363
>ECTD_BORPA (Q7W977) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 29.6 bits (65), Expect = 8.1 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 16/102 (15%) Frame = -2 Query: 537 LSCTGLWLALEDATTTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP 391 LSC+ L L D NG L +PGSH+ + K+ + + E G P P Sbjct: 166 LSCSVL---LTDNNEANGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDP 218 Query: 390 -----LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSR 280 L +Q + K+G V + +H S N+SP R Sbjct: 219 VSLQLLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,991,466 Number of Sequences: 219361 Number of extensions: 2159297 Number of successful extensions: 5230 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5222 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
