ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 266 8e-68
2dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 266 8e-68
3dbj|AK061701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 8e-68
4ref|NM_188677.1| Oryza sativa (japonica cultivar-group), Ozsa828... 262 1e-66
5dbj|AK067319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
6gb|AY111765.1| Zea mays CL18194_1 mRNA sequence 202 1e-48
7gb|DQ011286.1| Zea mays Mu killer (Muk) insertion site, genomic ... 174 2e-40
8gb|AY108185.1| Zea mays PCO082879 mRNA sequence 170 3e-39
9ref|NM_118534.3| Arabidopsis thaliana transcription factor AT4G2... 46 0.13
10emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BA... 46 0.13
11emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, ... 46 0.13
12gb|BT005776.1| Arabidopsis thaliana clone RAFL15-03-P13 (R20174)... 46 0.13
13gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC ... 46 0.13
14gb|AY310735.1| Homo sapiens glycine cleavage system protein H (a... 44 0.52
15gb|AC092718.3| Homo sapiens chromosome 16 clone RP11-303E16, com... 44 0.52
16gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome... 42 2.1
17emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 2.1
18gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosom... 42 2.1
19gb|AC161589.2| Mus musculus BAC clone RP24-383M20 from chromosom... 42 2.1
20gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, comple... 42 2.1
21gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, co... 40 8.2
22emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in... 40 8.2
23emb|AL354776.15| Human DNA sequence from clone RP11-196N14 on ch... 40 8.2
24emb|AL133412.7| Human DNA sequence from clone RP11-78H18 on chro... 40 8.2
25emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 40 8.2
26emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in ... 40 8.2
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
28dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
29emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, co... 40 8.2 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  266 bits (134), Expect = 8e-68
 Identities = 241/278 (86%), Gaps = 9/278 (3%)
 Strand = Plus / Minus

                                                                           
Query: 324     tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
               |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||
Sbjct: 7575530 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 7575471

                                                                           
Query: 384     ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
               ||||| |||||| |||||||         ||| || |||||||||||||||||||| |||
Sbjct: 7575470 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 7575420

                                                                           
Query: 444     caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
               || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||
Sbjct: 7575419 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 7575360

                                                                           
Query: 504     tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
               |||||||| ||||||||||| || ||||||||||||||  ||||||| |  ||||| |||
Sbjct: 7575359 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 7575300

                                                     
Query: 564     aagcggaaccttacaatgtcttccttaaagctcgcctt 601
               ||||||||||| |||||||||||||||||||| |||||
Sbjct: 7575299 aagcggaacctgacaatgtcttccttaaagctagcctt 7575262
to top
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0708G02
          Length = 168976

 Score =  266 bits (134), Expect = 8e-68
 Identities = 241/278 (86%), Gaps = 9/278 (3%)
 Strand = Plus / Minus

                                                                          
Query: 324    tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
              |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||
Sbjct: 124322 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 124263

                                                                          
Query: 384    ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
              ||||| |||||| |||||||         ||| || |||||||||||||||||||| |||
Sbjct: 124262 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 124212

                                                                          
Query: 444    caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
              || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||
Sbjct: 124211 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 124152

                                                                          
Query: 504    tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
              |||||||| ||||||||||| || ||||||||||||||  ||||||| |  ||||| |||
Sbjct: 124151 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 124092

                                                    
Query: 564    aagcggaaccttacaatgtcttccttaaagctcgcctt 601
              ||||||||||| |||||||||||||||||||| |||||
Sbjct: 124091 aagcggaacctgacaatgtcttccttaaagctagcctt 124054
to top
>dbj|AK061701.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E01, full
           insert sequence
          Length = 759

 Score =  266 bits (134), Expect = 8e-68
 Identities = 241/278 (86%), Gaps = 9/278 (3%)
 Strand = Plus / Minus

                                                                       
Query: 324 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
           |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||
Sbjct: 557 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 498

                                                                       
Query: 384 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
           ||||| |||||| |||||||         ||| || |||||||||||||||||||| |||
Sbjct: 497 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 447

                                                                       
Query: 444 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
           || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||
Sbjct: 446 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 387

                                                                       
Query: 504 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
           |||||||| ||||||||||| || ||||||||||||||  ||||||| |  ||||| |||
Sbjct: 386 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 327

                                                 
Query: 564 aagcggaaccttacaatgtcttccttaaagctcgcctt 601
           ||||||||||| |||||||||||||||||||| |||||
Sbjct: 326 aagcggaacctgacaatgtcttccttaaagctagcctt 289
to top
>ref|NM_188677.1| Oryza sativa (japonica cultivar-group), Ozsa8280 predicted mRNA
          Length = 2559

 Score =  262 bits (132), Expect = 1e-66
 Identities = 239/276 (86%), Gaps = 9/276 (3%)
 Strand = Plus / Minus

                                                                        
Query: 326  tcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagcct 385
            |||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||
Sbjct: 2559 tcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagcct 2500

                                                                        
Query: 386  gataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattgca 445
            ||| |||||| |||||||         ||| || |||||||||||||||||||| |||||
Sbjct: 2499 gatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttgca 2449

                                                                        
Query: 446  agccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagcatc 505
             || |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 2448 tgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaacatc 2389

                                                                        
Query: 506  catcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacgggaa 565
            |||||| ||||||||||| || ||||||||||||||  ||||||| |  ||||| |||||
Sbjct: 2388 catccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatgggaa 2329

                                                
Query: 566  gcggaaccttacaatgtcttccttaaagctcgcctt 601
            ||||||||| |||||||||||||||||||| |||||
Sbjct: 2328 gcggaacctgacaatgtcttccttaaagctagcctt 2293
to top
>dbj|AK067319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106K21, full
            insert sequence
          Length = 3334

 Score =  258 bits (130), Expect = 2e-65
 Identities = 240/278 (86%), Gaps = 9/278 (3%)
 Strand = Plus / Minus

                                                                        
Query: 324  tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
            |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||
Sbjct: 3072 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 3013

                                                                        
Query: 384  ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
            ||||| |||||| |||||||         ||| || |||||||||||||||||||| |||
Sbjct: 3012 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 2962

                                                                        
Query: 444  caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
            || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||
Sbjct: 2961 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 2902

                                                                        
Query: 504  tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
            |||||||| ||||||||||| || ||||||||||||||  ||||||| |  ||||| |||
Sbjct: 2901 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 2842

                                                  
Query: 564  aagcggaaccttacaatgtcttccttaaagctcgcctt 601
            ||| ||||||| |||||||||||||||||||| |||||
Sbjct: 2841 aagtggaacctgacaatgtcttccttaaagctagcctt 2804
to top
>gb|AY111765.1| Zea mays CL18194_1 mRNA sequence
          Length = 769

 Score =  202 bits (102), Expect = 1e-48
 Identities = 234/278 (84%)
 Strand = Plus / Plus

                                                                       
Query: 324 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
           |||||||| ||||||||||||||||| |||| |||||| || | ||||||||||| ||||
Sbjct: 139 tatcaaccagagcttccacaagaactgccaaagtgggctgcaatatcgctaaccagtagc 198

                                                                       
Query: 384 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
           || || |||||| | |||||| |||| ||||| || ||||||||||||||||| ||||||
Sbjct: 199 ctaatgacatggctgccagaaagccgcgagatctccatgcattcttccaagtctgcattg 258

                                                                       
Query: 444 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
           || |||||||| |||||||| || ||||| || || ||||||||||| ||| ||||| ||
Sbjct: 259 cacgccaactttacccactcatggtcatcatcgagatacttgatatcgaacgtgccaaca 318

                                                                       
Query: 504 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
           |||||||| ||||| || || ||||| ||||||||| | ||||| |  |  || || |||
Sbjct: 319 tccatccttagcctcttcgctacctcctctttcaatacaataacaccacctgagcatggg 378

                                                 
Query: 564 aagcggaaccttacaatgtcttccttaaagctcgcctt 601
           || |||||||| ||||| ||||||||||| ||||||||
Sbjct: 379 aaacggaacctcacaatatcttccttaaaactcgcctt 416
to top
>gb|DQ011286.1| Zea mays Mu killer (Muk) insertion site, genomic sequence
          Length = 13941

 Score =  174 bits (88), Expect = 2e-40
 Identities = 230/278 (82%)
 Strand = Plus / Plus

                                                                        
Query: 324  tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
            |||||||||||||||||||||||||| |||| ||| | ||| | |||| ||||  ||| |
Sbjct: 5519 tatcaaccggagcttccacaagaactgccaaagtgtgtcgcaatatcgytaacagataac 5578

                                                                        
Query: 384  ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
            ||||| |||||| |||| ||| |||| ||||| || ||||||||||||||||| | ||| 
Sbjct: 5579 ctgatgacatggctacccgaaagccgtgagatctccatgcattcttccaagtctgaatta 5638

                                                                        
Query: 444  caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
            || | |||||| ||||| || || ||||| || || ||||||||||||||| ||||| ||
Sbjct: 5639 cacgtcaactttacccattcatggtcatcatctagatacttgatatcaaacgtgccaaca 5698

                                                                        
Query: 504  tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
            |||||||| |||||||| || ||||| ||||||||| | ||||| ||||  || || | |
Sbjct: 5699 tccatccttagccttttcgctacctcctctttcaatacaataacactgcctgagcatgag 5758

                                                  
Query: 564  aagcggaaccttacaatgtcttccttaaagctcgcctt 601
            || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 5759 aaacggaacctcacaatatcttctttaaaactcgcctt 5796
to top
>gb|AY108185.1| Zea mays PCO082879 mRNA sequence
          Length = 668

 Score =  170 bits (86), Expect = 3e-39
 Identities = 230/278 (82%)
 Strand = Plus / Minus

                                                                       
Query: 324 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 383
           ||||||||||||||||| |||||||| |||| ||| | ||| | |||||||||  ||| |
Sbjct: 636 tatcaaccggagcttccccaagaactgccaaagtgtgtcgcaatatcgctaacagataac 577

                                                                       
Query: 384 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 443
           ||||| |||||| |||| ||| |||| ||||| || ||||||||||||||||| | ||| 
Sbjct: 576 ctgatgacatggctacccgaaagccgtgagatctccatgcattcttccaagtctgaatta 517

                                                                       
Query: 444 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 503
           || | |||||| ||||| || || ||||| || || ||||||||||||||| ||||| ||
Sbjct: 516 cacgtcaactttacccattcatggtcatcatctagatacttgatatcaaacgtgccaaca 457

                                                                       
Query: 504 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 563
           |||||||| |||||||| || ||||| ||||||||| | ||||| ||||  || || | |
Sbjct: 456 tccatccttagccttttcgctacctcctctttcaatacaataacactgcctgagcatgag 397

                                                 
Query: 564 aagcggaaccttacaatgtcttccttaaagctcgcctt 601
           || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 396 aaacggaacctcacaatatcttctttaaaactcgcctt 359
to top
>ref|NM_118534.3| Arabidopsis thaliana transcription factor AT4G24020 mRNA, complete
            cds
          Length = 3168

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 456  acccactcgtgatcatcgtcaaggtacttgatatc 490
            ||||| |||| |||||||||||| |||||||||||
Sbjct: 2862 acccattcgttatcatcgtcaagatacttgatatc 2828
to top
>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial
            sequence (ESSA project)
          Length = 77567

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 456  acccactcgtgatcatcgtcaaggtacttgatatc 490
            ||||| |||| |||||||||||| |||||||||||
Sbjct: 8099 acccattcgttatcatcgtcaagatacttgatatc 8065
to top
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60
          Length = 196677

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 456    acccactcgtgatcatcgtcaaggtacttgatatc 490
              ||||| |||| |||||||||||| |||||||||||
Sbjct: 143071 acccattcgttatcatcgtcaagatacttgatatc 143037
to top
>gb|BT005776.1| Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein
            (At4g24020) mRNA, complete cds
          Length = 3193

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 456  acccactcgtgatcatcgtcaaggtacttgatatc 490
            ||||| |||| |||||||||||| |||||||||||
Sbjct: 2862 acccattcgttatcatcgtcaagatacttgatatc 2828
to top
>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete
             sequence
          Length = 116156

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 456   acccactcgtgatcatcgtcaaggtacttgatatc 490
             ||||| |||| |||||||||||| |||||||||||
Sbjct: 69541 acccattcgttatcatcgtcaagatacttgatatc 69575
to top
>gb|AY310735.1| Homo sapiens glycine cleavage system protein H (aminomethyl carrier)
            (GCSH) gene, complete cds
          Length = 15085

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 257  aaactgacctcctggaacaact 278
            ||||||||||||||||||||||
Sbjct: 6242 aaactgacctcctggaacaact 6221
to top
>gb|AC092718.3| Homo sapiens chromosome 16 clone RP11-303E16, complete sequence
          Length = 203229

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 257   aaactgacctcctggaacaact 278
             ||||||||||||||||||||||
Sbjct: 91621 aaactgacctcctggaacaact 91600
to top
>gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome 9, complete sequence
          Length = 189707

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   cagcatccatcctcagccttt 519
             |||||||||||||||||||||
Sbjct: 33146 cagcatccatcctcagccttt 33166
to top
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
             complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 490   caaacatgccagcatccatcctcag 514
             |||||||| ||||||||||||||||
Sbjct: 44524 caaacatgtcagcatccatcctcag 44500
to top
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete
            sequence
          Length = 226160

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 500  agcatccatcctcagccttttggca 524
            ||||||| |||||||||||||||||
Sbjct: 4776 agcatccgtcctcagccttttggca 4752
to top
>gb|AC161589.2| Mus musculus BAC clone RP24-383M20 from chromosome 9, complete sequence
          Length = 226186

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 500    agcatccatcctcagccttttggca 524
              ||||||| |||||||||||||||||
Sbjct: 148008 agcatccgtcctcagccttttggca 148032
to top
>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence
          Length = 197108

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 499    cagcatccatcctcagccttt 519
              |||||||||||||||||||||
Sbjct: 190108 cagcatccatcctcagccttt 190128
to top
>gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, complete sequence
          Length = 137155

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 570   aaccttacaatgtcttcctt 589
             ||||||||||||||||||||
Sbjct: 39109 aaccttacaatgtcttcctt 39090
to top
>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15,
             complete sequence
          Length = 194916

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ttaacaacatgtaaaaactg 262
             ||||||||||||||||||||
Sbjct: 92451 ttaacaacatgtaaaaactg 92432
to top
>emb|AL354776.15| Human DNA sequence from clone RP11-196N14 on chromosome 20 Contains the
             3' end of the PPP4R1L gene for protein phosphatase 4
             regulatory subunit 1-like, the C20orf85 gene for an
             ankyrin domain-containing protein, the C20orf86 gene and
             three CpG islands, complete sequence
          Length = 146208

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   tcttgcaacgttacacatattctt 172
             |||||||| |||||||||||||||
Sbjct: 21641 tcttgcaaagttacacatattctt 21664
to top
>emb|AL133412.7| Human DNA sequence from clone RP11-78H18 on chromosome 9q22.1-22.33
             Contains the 5' end of the TNFSF15 gene for tumor necrosis
             factor (ligand) superfamily, member 15 (TL1, VEG1), a PRP4
             pre-mRNA processing factor 4 homolog B (PR4H, Prp4, PRP4H,
             PRP4K, KIAA0536) (PRPF4B) pseudogene and the TNFSF8 gene
             for tumor necrosis factor (ligand) superfamily, member 8
             (CD153, CD30L, CD30LG), complete sequence
          Length = 158717

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   taacaacatgtaaaaactgacctc 267
             |||||||||||| |||||||||||
Sbjct: 93415 taacaacatgtacaaactgacctc 93392
to top
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    agccttttggcaacctcatc 532
              ||||||||||||||||||||
Sbjct: 361004 agccttttggcaacctcatc 361023
to top
>emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in linkage group 15,
              complete sequence
          Length = 213513

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    tgtaaaaactgacctcctggaaca 275
              ||||||||||||| ||||||||||
Sbjct: 168250 tgtaaaaactgacatcctggaaca 168273
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 455     cacccactcgtgatcatcgtcaaggtacttga 486
               |||||||||||| || ||||| ||||||||||
Sbjct: 1913596 cacccactcgtggtcgtcgtccaggtacttga 1913627
to top
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0081C13
          Length = 144624

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 455   cacccactcgtgatcatcgtcaaggtacttga 486
             |||||||||||| || ||||| ||||||||||
Sbjct: 53157 cacccactcgtggtcgtcgtccaggtacttga 53188
to top
>emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, complete sequence
          Length = 164317

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   attgcaagccaacttcaccc 459
             ||||||||||||||||||||
Sbjct: 10008 attgcaagccaacttcaccc 10027


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,215,188
Number of Sequences: 3902068
Number of extensions: 4215188
Number of successful extensions: 74320
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74208
Number of HSP's gapped (non-prelim): 111
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top