ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8o01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 113 1e-22
2dbj|AK058717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 1e-22
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 113 1e-22
4emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 113 1e-22
5gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubi... 98 8e-18
6gb|DQ083192.1| Oryza sativa (indica cultivar-group) clone 5S5H65... 60 2e-06
7gb|BT016292.1| Zea mays clone Contig125 mRNA sequence 58 7e-06
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
9dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
10dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
11emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chro... 44 0.099
12emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on ch... 44 0.099
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.39
14dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.39
15gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 1.5
16ref|XM_513410.1| PREDICTED: Pan troglodytes similar to The KIAA0... 40 1.5
17ref|NM_015269.1| Homo sapiens zinc finger, CCHC domain containin... 40 1.5
18ref|NM_001009881.1| Homo sapiens zinc finger, CCHC domain contai... 40 1.5
19ref|NM_001009882.1| Homo sapiens zinc finger, CCHC domain contai... 40 1.5
20gb|BC035820.1| Homo sapiens zinc finger, CCHC domain containing ... 40 1.5
21ref|XM_532573.2| PREDICTED: Canis familiaris similar to zinc fin... 40 1.5
22ref|XM_853983.1| PREDICTED: Canis familiaris similar to zinc fin... 40 1.5
23gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complet... 40 1.5
24emb|CR860282.1| Pongo pygmaeus mRNA; cDNA DKFZp459G145 (from clo... 40 1.5
25dbj|AK220327.1| Mus musculus mRNA for mKIAA0191 protein 40 1.5
26dbj|AK095733.1| Homo sapiens cDNA FLJ38414 fis, clone FEBRA2009514 40 1.5
27ref|NM_175472.3| Mus musculus zinc finger, CCHC domain containin... 40 1.5
28dbj|AK049279.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 1.5
29dbj|AK031299.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 1.5
30dbj|AK041821.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 1.5
31emb|BX648783.1|HSM808934 Homo sapiens mRNA; cDNA DKFZp686I05143 ... 40 1.5
32gb|AF155197.1|AF155197 Acetivibrio cellulolyticus cellulosomal s... 40 1.5
33dbj|D83776.1| Human mRNA for KIAA0191 gene, partial cds 40 1.5
34gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Canc... 38 6.1
35gb|AC073345.11| Homo sapiens BAC clone RP11-630O5 from 7, comple... 38 6.1
36emb|CR388015.14| Zebrafish DNA sequence from clone DKEY-246L21 i... 38 6.1
37emb|BX957236.8| Zebrafish DNA sequence from clone DKEY-178O3 in ... 38 6.1
38ref|XM_724203.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 6.1
39gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete s... 38 6.1
40gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete s... 38 6.1
41emb|AL358072.21| Human DNA sequence from clone RP11-188D8 on chr... 38 6.1
42emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chro... 38 6.1
43emb|AL024474.1|HS91J24 Human DNA sequence from clone RP1-91J24 o... 38 6.1
44emb|AL683883.26| Mouse DNA sequence from clone RP23-361B8 on chr... 38 6.1
45gb|AC149225.18| Danio rerio clone ch211-103f17, complete sequence 38 6.1
46dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 38 6.1
47gb|DQ399777.1| Riemerella anatipestifer strain D-743 16S ribosom... 38 6.1
48gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, co... 38 6.1
49dbj|AK044367.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 6.1
50dbj|AK017945.1| Mus musculus adult male thymus cDNA, RIKEN full-... 38 6.1
51gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complet... 38 6.1
52emb|CR848558.2| Xenopus tropicalis finished cDNA, clone TEgg062e02 38 6.1
53emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-1... 38 6.1
54gb|AC121113.13| Mus musculus chromosome 1, clone RP23-53N22, com... 38 6.1
55emb|AL133246.3|CNS01DUJ BAC sequence from the SPG4 candidate reg... 38 6.1
56gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, compl... 38 6.1
57gb|BC012047.1| Homo sapiens zinc finger, CCHC domain containing ... 38 6.1
58gb|BC018753.1| Homo sapiens zinc finger, CCHC domain containing ... 38 6.1
59emb|AL772361.5| Mouse DNA sequence from clone RP23-136C22 on chr... 38 6.1 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  113 bits (57), Expect = 1e-22
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                            
Query: 10       tgtntacatgcccctaccaaaatatttttcttatgtnccagctttgctctacacaaacaa 69
                ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 18389952 tgtatacatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataa 18389893

                           
Query: 70       agcaacatcta 80
                |||||||||||
Sbjct: 18389892 agcaacatcta 18389882
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>dbj|AK058717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E02, full
           insert sequence
          Length = 650

 Score =  113 bits (57), Expect = 1e-22
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                       
Query: 10  tgtntacatgcccctaccaaaatatttttcttatgtnccagctttgctctacacaaacaa 69
           ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 481 tgtatacatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataa 422

                      
Query: 70  agcaacatcta 80
           |||||||||||
Sbjct: 421 agcaacatcta 411
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  113 bits (57), Expect = 1e-22
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                            
Query: 10       tgtntacatgcccctaccaaaatatttttcttatgtnccagctttgctctacacaaacaa 69
                ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 18316178 tgtatacatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataa 18316119

                           
Query: 70       agcaacatcta 80
                |||||||||||
Sbjct: 18316118 agcaacatcta 18316108
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score =  113 bits (57), Expect = 1e-22
 Identities = 67/71 (94%)
 Strand = Plus / Minus

                                                                         
Query: 10    tgtntacatgcccctaccaaaatatttttcttatgtnccagctttgctctacacaaacaa 69
             ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 41851 tgtatacatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataa 41792

                        
Query: 70    agcaacatcta 80
             |||||||||||
Sbjct: 41791 agcaacatcta 41781
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>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease
            mRNA, partial cds
          Length = 1593

 Score = 97.6 bits (49), Expect = 8e-18
 Identities = 66/71 (92%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                        
Query: 10   tgtntacatgcccctaccaaaatatttttcttatgtnccagctttgctctacacaaacaa 69
            ||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||
Sbjct: 1401 tgtatacatgcccctaccaaaatctttt-cttatgtaccagctttgctctacacaaataa 1343

                       
Query: 70   agcaacatcta 80
            |||||||||||
Sbjct: 1342 agcaacatcta 1332
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>gb|DQ083192.1| Oryza sativa (indica cultivar-group) clone 5S5H65 mRNA sequence
          Length = 741

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 47  ccagctttgctctacacaaacaaagcaacatcta 80
           |||||||||||||||||||| |||||||||||||
Sbjct: 740 ccagctttgctctacacaaataaagcaacatcta 707
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>gb|BT016292.1| Zea mays clone Contig125 mRNA sequence
          Length = 1106

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 23  ctaccaaaatatttttcttatgtnccagctttgctctaca 62
           ||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 896 ctaccaacatatttttcttatgtgctagctttgctctaca 857
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 48       cagctttgctctacacaaacaaag 71
                ||||||||||||||||||||||||
Sbjct: 12789892 cagctttgctctacacaaacaaag 12789915
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>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0086N11
          Length = 146185

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 48     cagctttgctctacacaaacaaag 71
              ||||||||||||||||||||||||
Sbjct: 138169 cagctttgctctacacaaacaaag 138192
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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0073A18
          Length = 176755

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 48   cagctttgctctacacaaacaaag 71
            ||||||||||||||||||||||||
Sbjct: 9374 cagctttgctctacacaaacaaag 9397
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>emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chromosome 1p32.1-33
             Contains the 3' ends of genes FLJ34719 and KIAA0191,
             complete sequence
          Length = 127006

 Score = 44.1 bits (22), Expect = 0.099
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 24    taccaaaatatttttcttatgt 45
             ||||||||||||||||||||||
Sbjct: 94767 taccaaaatatttttcttatgt 94788
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>emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on chromosome 4, complete
            sequence
          Length = 179370

 Score = 44.1 bits (22), Expect = 0.099
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 24   taccaaaatatttttcttatgt 45
            ||||||||||||||||||||||
Sbjct: 9681 taccaaaatatttttcttatgt 9660
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 67       caaagcaacatctatactaat 87
                |||||||||||||||||||||
Sbjct: 19151475 caaagcaacatctatactaat 19151455
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>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0043B22
          Length = 158857

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    caaagcaacatctatactaat 87
             |||||||||||||||||||||
Sbjct: 54960 caaagcaacatctatactaat 54940
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 59      tacacaaacaaagcaacatctata 82
               |||||||||||||||||| |||||
Sbjct: 1438573 tacacaaacaaagcaacaactata 1438596
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>ref|XM_513410.1| PREDICTED: Pan troglodytes similar to The KIAA0191 gene is
           expressed ubiquitously.~The KIAA0191 protein retains the
           C2H2 zinc-finger at its N-terminal region. (LOC456859),
           mRNA
          Length = 5007

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 985 ccaaaatatttttcttatgt 966
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>ref|NM_015269.1| Homo sapiens zinc finger, CCHC domain containing 11 (ZCCHC11),
            transcript variant 2, mRNA
          Length = 5842

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1234 ccaaaatatttttcttatgt 1215
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>ref|NM_001009881.1| Homo sapiens zinc finger, CCHC domain containing 11 (ZCCHC11),
            transcript variant 1, mRNA
          Length = 5845

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1234 ccaaaatatttttcttatgt 1215
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>ref|NM_001009882.1| Homo sapiens zinc finger, CCHC domain containing 11 (ZCCHC11),
            transcript variant 3, mRNA
          Length = 5830

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1234 ccaaaatatttttcttatgt 1215
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>gb|BC035820.1| Homo sapiens zinc finger, CCHC domain containing 11, mRNA (cDNA clone
            IMAGE:5553553), partial cds
          Length = 2426

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1245 ccaaaatatttttcttatgt 1226
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>ref|XM_532573.2| PREDICTED: Canis familiaris similar to zinc finger, CCHC domain
            containing 11 isoform b, transcript variant 1
            (LOC475349), mRNA
          Length = 5811

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1230 ccaaaatatttttcttatgt 1211
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>ref|XM_853983.1| PREDICTED: Canis familiaris similar to zinc finger, CCHC domain
           containing 11 isoform b, transcript variant 2
           (LOC475349), mRNA
          Length = 5206

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 613 ccaaaatatttttcttatgt 594
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>gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complete sequence
          Length = 190653

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     catgcccctaccaaaatatt 35
              ||||||||||||||||||||
Sbjct: 156431 catgcccctaccaaaatatt 156412
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>emb|CR860282.1| Pongo pygmaeus mRNA; cDNA DKFZp459G145 (from clone DKFZp459G145)
          Length = 4003

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1245 ccaaaatatttttcttatgt 1226
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>dbj|AK220327.1| Mus musculus mRNA for mKIAA0191 protein
          Length = 4710

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 797 ccaaaatatttttcttatgt 778
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>dbj|AK095733.1| Homo sapiens cDNA FLJ38414 fis, clone FEBRA2009514
          Length = 2245

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1263 ccaaaatatttttcttatgt 1244
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>ref|NM_175472.3| Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA
          Length = 6054

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1549 ccaaaatatttttcttatgt 1530
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>dbj|AK049279.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330018P17 product:zinc finger, CCHC domain
           containing 11, full insert sequence
          Length = 1789

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 538 ccaaaatatttttcttatgt 519
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>dbj|AK031299.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030404K05 product:hypothetical
           Zn-finger, CCHC type/PAP/25A-associated domain/PAP/25A
           core domain/Zinc finger CCHC-type profile/Zn-finger,
           C2H2 type containing protein, full insert sequence
          Length = 3282

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 942 ccaaaatatttttcttatgt 923
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>dbj|AK041821.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630040F24 product:zinc finger, CCHC
            domain containing 11, full insert sequence
          Length = 1643

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ccaaaatatttttcttatgt 45
            ||||||||||||||||||||
Sbjct: 1555 ccaaaatatttttcttatgt 1536
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>emb|BX648783.1|HSM808934 Homo sapiens mRNA; cDNA DKFZp686I05143 (from clone DKFZp686I05143)
          Length = 4319

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 650 ccaaaatatttttcttatgt 631
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>gb|AF155197.1|AF155197 Acetivibrio cellulolyticus cellulosomal scaffoldin precursor (cipV)
           gene, complete cds
          Length = 6555

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 23  ctaccaaaatatttttctta 42
           ||||||||||||||||||||
Sbjct: 568 ctaccaaaatatttttctta 587
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>dbj|D83776.1| Human mRNA for KIAA0191 gene, partial cds
          Length = 5203

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ccaaaatatttttcttatgt 45
           ||||||||||||||||||||
Sbjct: 618 ccaaaatatttttcttatgt 599
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>gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 196723

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    ctctacacaaacaaagcaa 74
             |||||||||||||||||||
Sbjct: 17296 ctctacacaaacaaagcaa 17278
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>gb|AC073345.11| Homo sapiens BAC clone RP11-630O5 from 7, complete sequence
          Length = 144834

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    acatgcccctaccaaaata 33
             |||||||||||||||||||
Sbjct: 67816 acatgcccctaccaaaata 67798
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>emb|CR388015.14| Zebrafish DNA sequence from clone DKEY-246L21 in linkage group 24,
             complete sequence
          Length = 140648

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 64    aaacaaagcaacatctatactaa 86
             |||||||||||||||| ||||||
Sbjct: 53885 aaacaaagcaacatctgtactaa 53863
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>emb|BX957236.8| Zebrafish DNA sequence from clone DKEY-178O3 in linkage group 6,
             complete sequence
          Length = 211391

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    acatctatactaatggggt 92
             |||||||||||||||||||
Sbjct: 25665 acatctatactaatggggt 25683
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>ref|XM_724203.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01520)
            partial mRNA
          Length = 5307

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   accaaaatatttttcttat 43
            |||||||||||||||||||
Sbjct: 2074 accaaaatatttttcttat 2056
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>gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete sequence
          Length = 116410

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    tacacaaacaaagcaacat 77
             |||||||||||||||||||
Sbjct: 14619 tacacaaacaaagcaacat 14601
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>gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete sequence
          Length = 116410

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    tacacaaacaaagcaacat 77
             |||||||||||||||||||
Sbjct: 14619 tacacaaacaaagcaacat 14601
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>emb|AL358072.21| Human DNA sequence from clone RP11-188D8 on chromosome 1 Contains the
             5' end of the MAN1A2 gene for mannosidase alpha class 1A
             member 2 and two CpG islands, complete sequence
          Length = 129725

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    cctaccaaaatatttttct 40
             |||||||||||||||||||
Sbjct: 81731 cctaccaaaatatttttct 81749
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>emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chromosome 1p11.1-13.3,
             complete sequence
          Length = 100643

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 29    aaatatttttcttatgtnccag 50
             ||||||||||||||||| ||||
Sbjct: 26796 aaatatttttcttatgtaccag 26817
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>emb|AL024474.1|HS91J24 Human DNA sequence from clone RP1-91J24 on chromosome 6q24 Contains a
             pseudogene similar to single-stranded DNA-binding protein,
             the 5' end of the UTRN gene for utrophin
             (dystrophin-related protein) (DRP, DRP1, DMDL) and a
             putative novel gene. Contains a CpG island, complete
             sequence
          Length = 95267

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 63    caaacaaagcaacatctatacta 85
             |||||||||||||| ||||||||
Sbjct: 60970 caaacaaagcaacagctatacta 60948
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>emb|AL683883.26| Mouse DNA sequence from clone RP23-361B8 on chromosome X, complete
              sequence
          Length = 190863

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     cagctttgctctacacaaa 66
              |||||||||||||||||||
Sbjct: 186184 cagctttgctctacacaaa 186166
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>gb|AC149225.18| Danio rerio clone ch211-103f17, complete sequence
          Length = 185038

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     acatctatactaatggggt 92
              |||||||||||||||||||
Sbjct: 143481 acatctatactaatggggt 143463
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 64      aaacaaagcaacatctatactaa 86
               |||||||||| ||||||||||||
Sbjct: 3954107 aaacaaagcagcatctatactaa 3954129
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>gb|DQ399777.1| Riemerella anatipestifer strain D-743 16S ribosomal RNA gene,
           partial sequence; 16S-23S ribosomal RNA intergenic
           spacer, tRNA-Ile and tRNA-Ala genes, complete sequence;
           and 23S ribosomal RNA gene, partial sequence
          Length = 1153

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 73  aacatctatactaatgggg 91
           |||||||||||||||||||
Sbjct: 447 aacatctatactaatgggg 465
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>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence
          Length = 166236

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     caaaatatttttcttatgt 45
              |||||||||||||||||||
Sbjct: 140339 caaaatatttttcttatgt 140321
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>dbj|AK044367.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930009J04 product:unclassifiable, full insert
            sequence
          Length = 2152

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   ctaccaaaatatttttctt 41
            |||||||||||||||||||
Sbjct: 1208 ctaccaaaatatttttctt 1226
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>dbj|AK017945.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830424K16 product:unclassifiable, full
            insert sequence
          Length = 1472

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   cagctttgctctacacaaa 66
            |||||||||||||||||||
Sbjct: 1035 cagctttgctctacacaaa 1053
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>gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complete sequence
          Length = 112626

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    atgcccctaccaaaatatt 35
             |||||||||||||||||||
Sbjct: 29173 atgcccctaccaaaatatt 29155
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>emb|CR848558.2| Xenopus tropicalis finished cDNA, clone TEgg062e02
          Length = 2991

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 60   acacaaacaaagcaacatc 78
            |||||||||||||||||||
Sbjct: 2486 acacaaacaaagcaacatc 2504
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>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173043

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ctaccaaaatatttttctt 41
             |||||||||||||||||||
Sbjct: 26144 ctaccaaaatatttttctt 26162
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>gb|AC121113.13| Mus musculus chromosome 1, clone RP23-53N22, complete sequence
          Length = 210381

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ctaccaaaatatttttctt 41
              |||||||||||||||||||
Sbjct: 163630 ctaccaaaatatttttctt 163648
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>emb|AL133246.3|CNS01DUJ BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 852C13 of
             library RPCI-11 from chromosome 2 of Homo sapiens (Human)
          Length = 222730

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ctaccaaaatatttttctt 41
             |||||||||||||||||||
Sbjct: 16274 ctaccaaaatatttttctt 16292
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>gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, complete sequence
          Length = 148006

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    ctctacacaaacaaagcaa 74
             |||||||||||||||||||
Sbjct: 44394 ctctacacaaacaaagcaa 44376
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>gb|BC012047.1| Homo sapiens zinc finger, CCHC domain containing 11, mRNA (cDNA clone
            IMAGE:3345909), with apparent retained intron
          Length = 2046

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 27   caaaatatttttcttatgt 45
            |||||||||||||||||||
Sbjct: 1230 caaaatatttttcttatgt 1212
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>gb|BC018753.1| Homo sapiens zinc finger, CCHC domain containing 11, mRNA (cDNA clone
            IMAGE:2967374), containing frame-shift errors
          Length = 2046

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 27   caaaatatttttcttatgt 45
            |||||||||||||||||||
Sbjct: 1230 caaaatatttttcttatgt 1212
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>emb|AL772361.5| Mouse DNA sequence from clone RP23-136C22 on chromosome 2, complete
             sequence
          Length = 128685

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ccaaaatatttttcttatg 44
             |||||||||||||||||||
Sbjct: 43419 ccaaaatatttttcttatg 43401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,510,646
Number of Sequences: 3902068
Number of extensions: 1510646
Number of successful extensions: 103447
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103190
Number of HSP's gapped (non-prelim): 256
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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