>Y4597_ARATH (P0C042) Hypothetical protein At4g15970|
          Length = 367

 Score =  115 bits (287), Expect = 1e-25
 Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 2/122 (1%)
 Frame = -1

Query: 656 GFLFVRSCNKTIEFYRHWQAGRYRFFGKHEQDVFNLIKHE-MTDRLGVAIQFLDTTYISG 480
           GF FV++  +TI+FY +W   R R+  +H+QDV + IK      ++G+ ++FLDT Y  G
Sbjct: 191 GFAFVKANQRTIDFYNYWYMSRLRYPDRHDQDVLDQIKGGGYPAKIGLKMRFLDTKYFGG 250

Query: 479 FCQLSRDLNKICTLHANCCVGLGAKLHDLRNVLDVWRNY-TAAPVTDKRAGKFQWKVPGI 303
           FC+ SRDL+K+CT+HANCCVGL  K+ DLR V+  W NY +AA  TD +     W+ P  
Sbjct: 251 FCEPSRDLDKVCTMHANCCVGLENKIKDLRQVIVDWENYVSAAKTTDGQI--MTWRDPEN 308

Query: 302 CI 297
           C+
Sbjct: 309 CM 310

>RL25_BACTN (Q89YZ1) 50S ribosomal protein L25 (General stress protein CTC)|
          Length = 196

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
 Frame = +3

Query: 498 VEELDGDAEAVR--------HLVLDEVEHVLFVLAEEAVPSGLPVPVELDGL 629
           V +LD D + V         H V D + HV F   +EA P  + VPV+L+GL
Sbjct: 64  VVDLDIDGKKVNAILKDIQFHPVKDNILHVDFYQIDEAKPIVMEVPVQLEGL 115

>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
            helicase II) (NDH II) (DEAH box protein 9) (mHEL-5)
          Length = 1380

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
 Frame = -1

Query: 656  GFLFVRSCNKTIEFYRHWQAGRYRFFGKHEQ-------DVFNLIKHEMTDRL------GV 516
            G+  + +  K +E   H+ + RY+    H Q        VF+ +   +T  +        
Sbjct: 661  GWNLIYTMQKHLENNSHFGSHRYQILPLHSQIPREEQRKVFDPVPDGVTKVILSTNIAET 720

Query: 515  AIQFLDTTYISGFCQLSRDLNKICTLHANCCVGLGAKLHDLRNVLDVWRNYTAAPVTDKR 336
            +I   D  Y+   C   +   K+ T H N           + N   VW + T       R
Sbjct: 721  SITINDVVYVIDSC---KQKVKLFTAHNN-----------MTNYATVWASKTNLEQRKGR 766

Query: 335  AGKFQWKVPGICIH*CNCCWLDEL 264
            AG+ +   PG C H C+    D L
Sbjct: 767  AGRVR---PGFCFHLCSRARFDRL 787

>RL25_BACFR (Q64X29) 50S ribosomal protein L25 (General stress protein CTC)|
          Length = 196

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 534 HLVLDEVEHVLFVLAEEAVPSGLPVPVELDGL 629
           H V D + HV F   +EA P  + VPV+L+GL
Sbjct: 84  HPVKDTILHVDFYQIDEAKPIVMEVPVQLEGL 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,415,536
Number of Sequences: 219361
Number of extensions: 1773351
Number of successful extensions: 4911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4910
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)