ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9c23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MD2L2_MOUSE (Q9D752) Mitotic spindle assembly checkpoint protein... 39 0.011
2MD2L2_HUMAN (Q9UI95) Mitotic spindle assembly checkpoint protein... 39 0.011
3POLN_WEEV (P13896) Nonstructural polyprotein (Polyprotein nsP123... 31 4.1
4VU47_HHV6U (Q06093) Glycoprotein U47 precursor 30 5.3
5ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoce... 30 9.1

>MD2L2_MOUSE (Q9D752) Mitotic spindle assembly checkpoint protein MAD2B|
           (MAD2-like 2)
          Length = 211

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -1

Query: 573 RAXLIKLSVAEPLTKPLPSDSSWEITAYFRSLPAGGAKDKEEDEARMWIHTDIK-AWMQT 397
           RA ++K+SV + +    P   ++ +  + R       +  +  +   WI  D +   M  
Sbjct: 124 RAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHD 183

Query: 396 PQITPIKSMGCDPLKMQLYLEQ 331
           P++ P+K+M  D LKMQLY+E+
Sbjct: 184 PRLIPLKTMTSDILKMQLYVEE 205



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>MD2L2_HUMAN (Q9UI95) Mitotic spindle assembly checkpoint protein MAD2B|
           (MAD2-like 2) (hREV7)
          Length = 211

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -1

Query: 573 RAXLIKLSVAEPLTKPLPSDSSWEITAYFRSLPAGGAKDKEEDEARMWIHTDIK-AWMQT 397
           RA ++K+SV + +    P   ++ +  + R       +  +  +   WI  D +   M  
Sbjct: 124 RAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHD 183

Query: 396 PQITPIKSMGCDPLKMQLYLEQ 331
           P++ P+K+M  D LKMQLY+E+
Sbjct: 184 PRLIPLKTMTSDILKMQLYVEE 205



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>POLN_WEEV (P13896) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2466

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 352 LQRITSH*LDGGYLRRLHPCLDVRMDPHPSLVLLLV--LRTACREGSEV 492
           + R+TSH LD G+ RRL   L+  + P P++ +  V  LR   +E  EV
Sbjct: 450 IPRLTSHGLDMGFRRRLKLLLEPTVKPAPAITMADVEHLRGLQQEAEEV 498



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>VU47_HHV6U (Q06093) Glycoprotein U47 precursor|
          Length = 651

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 279 NQYFVPTKQDPLPXMGRVVLGRAASSKDHIPLT*WGLSAASASMP*CPYGSTSEPRPPP 455
           +QYF   KQ P P       GRA  + D I  T    ++AS + P  P  +   P PPP
Sbjct: 243 DQYF---KQSPKPINVTTSFGRAIVNFDSILTTTPSSTSASLTSPHIPSTNIPTPAPPP 298



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>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor) (Beta-T)
          Length = 483

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 423 YGSTSEPRPPPCPSHR--LQGGIGSRR 497
           YGS  +P+PPP P H+  L  G  S+R
Sbjct: 249 YGSQEQPQPPPLPQHQPILGNGRASKR 275


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,393,469
Number of Sequences: 219361
Number of extensions: 2000126
Number of successful extensions: 4874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4871
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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