Clone Information

BLAST Search Result

Clone Name	rbags8n21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009646.1\| Triticum aestivum clone wrsu1.pk0006.a3:fis, full...	973	0.0
2	ref\|XM_464784.1\| Oryza sativa (japonica cultivar-group), mRNA	323	4e-85
3	gb\|AY568677.1\| Oryza sativa (japonica cultivar-group) proline- a...	303	4e-79
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
5	dbj\|AP005756.3\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
6	dbj\|AK058752.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	2e-56
7	ref\|NM_191846.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
9	dbj\|AP003343.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
10	dbj\|AK100192.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
11	gb\|AC010242.7\| Homo sapiens chromosome 5 clone CTC-359E10, compl...	46	0.14
12	gb\|AC008816.8\| Homo sapiens chromosome 5 clone CTD-2122K17, comp...	46	0.14
13	gb\|AC010280.7\| Homo sapiens chromosome 5 clone CTC-537E7, comple...	46	0.14
14	gb\|AC017093.3\|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,...	46	0.14
15	gb\|AC010157.12\| Homo sapiens chromosome 10 clone RP11-202D18, co...	44	0.53
16	gb\|AC118627.6\| Mus musculus chromosome 15, clone RP24-91E8, comp...	42	2.1
17	gb\|AY582740.1\| Chlamydomonas reinhardtii Fe-hydrogenase assembly...	42	2.1
18	ref\|XM_451567.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ...	42	2.1
19	gb\|AC129886.3\| Atelerix albiventris clone LB4-234A16, complete s...	42	2.1
20	emb\|CR382122.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	42	2.1
21	gb\|AC159301.2\| Mus musculus BAC clone RP23-213B1 from chromosome...	42	2.1
22	gb\|AC068992.31\| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Canc...	42	2.1
23	gb\|DP000003.1\| Atelerix albiventris target 1 genomic scaffold	42	2.1
24	gb\|AC102545.9\| Mus musculus chromosome 9, clone RP23-118J13, com...	40	8.3
25	gb\|AC007245.3\| Homo sapiens BAC clone RP11-273L18 from 7, comple...	40	8.3
26	gb\|AC099524.5\| Homo sapiens chromosome 16 clone RP11-960L18, com...	40	8.3
27	emb\|CT025841.2\| Medicago truncatula chromosome 5 clone mth2-131j...	40	8.3
28	ref\|XM_645152.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	8.3
29	gb\|AC010099.10\| Homo sapiens BAC clone RP11-420H19 from 7, compl...	40	8.3
30	emb\|AL161517.2\|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ...	40	8.3
31	emb\|AL049524.1\|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA...	40	8.3
32	gb\|AC159656.11\| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cance...	40	8.3
33	gb\|AY113188.1\| Mastigamoeba balamuthi aldehyde-alcohol dehydroge...	40	8.3
34	emb\|BX470154.5\| Zebrafish DNA sequence from clone CH211-81N22, c...	40	8.3
35	gb\|AC093597.3\| Homo sapiens BAC clone RP11-187O17 from 4, comple...	40	8.3
36	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	8.3
37	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
38	dbj\|AP004571.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
39	dbj\|AP004236.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
40	dbj\|AK120657.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.3
41	gb\|AF118222.1\|F3H7 Arabidopsis thaliana BAC F3H7	40	8.3
42	gb\|AF142686.1\| Cyclolobium nutans maturase-like protein (matK) g...	40	8.3
43	gb\|AC006120.1\|AC006120 Homo sapiens chromosome 17, clone hRPK.34...	40	8.3
44	gb\|AE008384.1\| Methanosarcina mazei strain Goe1, complete genome	40	8.3
45	gb\|AC155302.2\| Mus musculus BAC clone RP24-227A11 from chromosom...	40	8.3
46	gb\|AC140392.3\| Mus musculus BAC clone RP24-89F9 from chromosome ...	40	8.3

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  973 bits (491), Expect = 0.0
 Identities = 571/594 (96%), Gaps = 3/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  tagntagtgatat-acatgataaatcaacaaaaaatacgataaatatatcaagccacaag 77
           ||| ||||||||| |||||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 69  tagatagtgatattacatgataaaacaacaaaaa-tacaagaaatatatcaagccacaag 127

                                                                       
Query: 78  natagcatcaatcaagaaaaatgcgtggtaggaagaaatttagccaagaaacacccatga 137
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 128 -atagcatcaatcaagaaaaatgcgtgggaggaagaaatttagccaagaaacaccaatga 186

                                                                       
Query: 138 ctaaaactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagc 197
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctaaaattagtagtggaattcatttgccttcttgaagaccccagcttgggcagaagcagc 246

                                                                       
Query: 198 actatcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaa 257
           || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 accatcagaggtcacggccacgacgatgcagtccttcacctgctgggtggtaaatgggaa 306

                                                                       
Query: 258 cttgttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaat 317
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 cttcttgttcacaatggagttgaggtatgcagctgccccctcacgtatcagggcgccaat 366

                                                                       
Query: 318 accatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctat 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 accatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctat 426

                                                                       
Query: 378 catactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaat 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 427 catactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaac 486

                                                                       
Query: 438 tatagcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttgg 497
           |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 487 tatagcatctgggtgattcttccagtagtcgcaggatccaatgaacccatgcttctttgg 546

                                                                       
Query: 498 acttgcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatgg 557
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 acttgcagggacatcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatgg 606

                                                                 
Query: 558 cgtcggtgtagtgccataagatggcgtcggtgtagtgccgtaagatggcgtcgg 611
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 607 cgtcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggcgtcgg 660



 Score =  135 bits (68), Expect = 2e-28
 Identities = 74/76 (97%)
 Strand = Plus / Plus

                                                                       
Query: 536 tcggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgc 595
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 609 tcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggcgtcggtgtagtgc 668

                           
Query: 596 cgtaagatggcgtcgg 611
           ||||||||||||||||
Sbjct: 669 cgtaagatggcgtcgg 684



 Score =  119 bits (60), Expect = 1e-23
 Identities = 72/76 (94%)
 Strand = Plus / Plus

                                                                       
Query: 536 tcggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgc 595
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 633 tcggtgtagtgccgtaagttggcgtcggtgtagtgccgtaagatggcgtcggtgtagtgc 692

                           
Query: 596 cgtaagatggcgtcgg 611
           |||||| ||| |||||
Sbjct: 693 cgtaagttggtgtcgg 708



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 536 tcggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgt 590
           ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct: 657 tcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggtgtcggtgt 711

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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  323 bits (163), Expect = 4e-85
 Identities = 387/462 (83%), Gaps = 6/462 (1%)
 Strand = Plus / Minus

                                                                       
Query: 144 ctagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcactatc 203
           |||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |||
Sbjct: 660 ctagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgccatc 601

                                                                       
Query: 204 agaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttgtt 263
           |||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 600 agaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttctt 541

                                                                       
Query: 264 gttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaataccatc 323
           |||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||||
Sbjct: 540 gttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtaccatc 481

                                                                       
Query: 324 agttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcatact 383
           ||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |||
Sbjct: 480 agttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaact 421

                                                                       
Query: 384 gcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattatagc 443
           ||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || ||| |
Sbjct: 420 gcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgataac 361

                                                                       
Query: 444 gtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggacttgc 503
            ||||| || ||||||||| | ||||||||||||  |||  |||||||  | |||  | |
Sbjct: 360 atctggatggttcttccagtaatcgcaggatccacagaaatcatgctttgtcggaacttc 301

                                                                       
Query: 504 agggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcgg 563
           |||||| |||      ||||| || |||||||| ||||| |||||||||||||| || ||
Sbjct: 300 agggacatca------ggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttgg 247

                                                     
Query: 564 tgtagtgccataagatggcgtcggtgtagtgccgtaagatgg 605
           ||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 246 tgtagtgccgtaagatggtgttggtgtagtgccataagatgg 205



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                       
Query: 538 ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 597
           |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 248 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 189

               
Query: 598 taag 601
           ||||
Sbjct: 188 taag 185

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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  303 bits (153), Expect = 4e-79
 Identities = 386/464 (83%), Gaps = 6/464 (1%)
 Strand = Plus / Minus

                                                                       
Query: 142 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 201
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 726 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 667

                                                                       
Query: 202 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 261
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 666 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 607

                                                                       
Query: 262 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 321
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 606 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 547

                                                                       
Query: 322 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 381
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 546 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 487

                                                                       
Query: 382 ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 441
           ||||| |||| | | | |||| |||| |||| ||||||||||||||||||||  || |||
Sbjct: 486 ctgcaagcagtatcgagtgtcatgccaatgtcgccaagggacccaatagctgagatgata 427

                                                                       
Query: 442 gcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggactt 501
            | ||||| || ||||||||| | ||||||||||||  |||  |||||||  | |||  |
Sbjct: 426 acatctggatggttcttccagtaatcgcaggatccacagaaatcatgctttgtcggaact 367

                                                                       
Query: 502 gcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggcgtc 561
            ||||||| |||      ||||| || |||| ||| ||||| |||||||||||||| || 
Sbjct: 366 tcagggacatca------ggtgtgctgggggagcttggtgtcgtgccgtaagatggtgtt 313

                                                       
Query: 562 ggtgtagtgccataagatggcgtcggtgtagtgccgtaagatgg 605
           ||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 312 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatgg 269



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                       
Query: 538 ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 597
           |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 312 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 253

               
Query: 598 taag 601
           ||||
Sbjct: 252 taag 249

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                           
Query: 142     aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 201
               |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 7323154 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 7323213

                                                                           
Query: 202     tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 261
               |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 7323214 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 7323273

                                                                           
Query: 262     ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 321
               |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 7323274 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 7323333

                                                                           
Query: 322     tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 381
               ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 7323334 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 7323393

                                                                           
Query: 382     ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 441
               ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 7323394 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 7323453

                                    
Query: 442     gcgtctgggtgattcttccag 462
                | ||||| || |||||||||
Sbjct: 7323454 acatctggatggttcttccag 7323474



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                           
Query: 519     aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 578
               |||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 7323610 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 7323669

                                          
Query: 579     tggcgtcggtgtagtgccgtaagatgg 605
               ||| || ||||||||||| ||||||||
Sbjct: 7323670 tggtgttggtgtagtgccataagatgg 7323696



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                           
Query: 538     ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 597
               |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 7323653 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 7323712

                   
Query: 598     taag 601
               ||||
Sbjct: 7323713 taag 7323716

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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                         
Query: 142   aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 201
             |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 98962 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 99021

                                                                         
Query: 202   tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 261
             |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 99022 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 99081

                                                                         
Query: 262   ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 321
             |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 99082 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 99141

                                                                         
Query: 322   tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 381
             ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 99142 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 99201

                                                                         
Query: 382   ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 441
             ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 99202 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 99261

                                  
Query: 442   gcgtctgggtgattcttccag 462
              | ||||| || |||||||||
Sbjct: 99262 acatctggatggttcttccag 99282



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                         
Query: 519   aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 578
             |||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 99418 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 99477

                                        
Query: 579   tggcgtcggtgtagtgccgtaagatgg 605
             ||| || ||||||||||| ||||||||
Sbjct: 99478 tggtgttggtgtagtgccataagatgg 99504



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 538   ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 597
             |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 99461 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 99520

                 
Query: 598   taag 601
             ||||
Sbjct: 99521 taag 99524

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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  228 bits (115), Expect = 2e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 142 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 201
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 239 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 180

                                                                       
Query: 202 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 261
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 179 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 120

                                                                       
Query: 262 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 321
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 119 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 60

                                                              
Query: 322 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgcca 372
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||
Sbjct: 59  tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgcca 9

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>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 228  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 281
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1848 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1795

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 228      gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 281
                ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 30289367 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 30289314

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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 228   gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 281
             ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 77686 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 77633

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>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 228  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 281
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1937 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1884

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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 476   caatgaatccatgcttctttgga 498
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024

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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 476   caatgaatccatgcttctttgga 498
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024

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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 476   caatgaatccatgcttctttgga 498
             |||||||||||||||||||||||
Sbjct: 43669 caatgaatccatgcttctttgga 43691

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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 476   caatgaatccatgcttctttgga 498
             |||||||||||||||||||||||
Sbjct: 91407 caatgaatccatgcttctttgga 91385

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>gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, complete sequence
          Length = 160310

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 152   gggattcatttgccttcttgaa 173
             ||||||||||||||||||||||
Sbjct: 91263 gggattcatttgccttcttgaa 91242

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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 502    gcagggacttcatgggaaggt 522
              |||||||||||||||||||||
Sbjct: 115193 gcagggacttcatgggaaggt 115173

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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 518 aaggtgtacttggggtgctcg 538
           |||||||||||||||||||||
Sbjct: 695 aaggtgtacttggggtgctcg 675

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>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 246 tgtaaatgggaacttgttgtt 266
           |||||||||||||||||||||
Sbjct: 360 tgtaaatgggaacttgttgtt 380

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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 323   cagttctagtgtttgagagtgcatc 347
             ||||||||| |||||||||||||||
Sbjct: 18472 cagttctagagtttgagagtgcatc 18448



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 323   cagttctagtgtttgagagtgcatc 347
             ||||||||| |||||||||||||||
Sbjct: 17254 cagttctagagtttgagagtgcatc 17278

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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   tgtaaatgggaacttgttgtt 266
             |||||||||||||||||||||
Sbjct: 64643 tgtaaatgggaacttgttgtt 64663

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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tcatgcatatttcctagcttc 366
              |||||||||||||||||||||
Sbjct: 108420 tcatgcatatttcctagcttc 108440

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>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143611

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    tatacatgataaatcaacaaa 49
             |||||||||||||||||||||
Sbjct: 19797 tatacatgataaatcaacaaa 19777

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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 323    cagttctagtgtttgagagtgcatc 347
              ||||||||| |||||||||||||||
Sbjct: 627744 cagttctagagtttgagagtgcatc 627720



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 323    cagttctagtgtttgagagtgcatc 347
              ||||||||| |||||||||||||||
Sbjct: 626526 cagttctagagtttgagagtgcatc 626550

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>gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, complete sequence
          Length = 241789

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    gccaagaaacacccatgact 139
              ||||||||||||||||||||
Sbjct: 212259 gccaagaaacacccatgact 212278

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>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence
          Length = 133137

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    taggaagaaatttagccaag 125
              ||||||||||||||||||||
Sbjct: 108434 taggaagaaatttagccaag 108453

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>gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, complete sequence
          Length = 184518

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 38     taaatcaacaaaaaatacgataaa 61
              ||||||||||||||||| ||||||
Sbjct: 125995 taaatcaacaaaaaataagataaa 125972

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>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ggttgtaaatgggaacttgt 262
             ||||||||||||||||||||
Sbjct: 48940 ggttgtaaatgggaacttgt 48921

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>ref|XM_645152.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (233.t00005)
           partial mRNA
          Length = 306

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  catgataaatcaacaaaaaa 52
           ||||||||||||||||||||
Sbjct: 156 catgataaatcaacaaaaaa 175

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>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    gaaatttagccaagaaacac 131
              ||||||||||||||||||||
Sbjct: 123891 gaaatttagccaagaaacac 123872

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>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aagaaatttagccaagaaac 129
              ||||||||||||||||||||
Sbjct: 139883 aagaaatttagccaagaaac 139902

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>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aagaaatttagccaagaaac 129
             ||||||||||||||||||||
Sbjct: 79920 aagaaatttagccaagaaac 79939

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>gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 205702

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     tatacatgataaatcaacaaaaaa 52
              ||||||||||||||||| ||||||
Sbjct: 135229 tatacatgataaatcaaaaaaaaa 135252

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>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  atgcagctgccccctcgcgt 303
            ||||||||||||||||||||
Sbjct: 1719 atgcagctgccccctcgcgt 1738

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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    tcatactgcatgcagcacca 396
              ||||||||||||||||||||
Sbjct: 114572 tcatactgcatgcagcacca 114553

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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   cagggacttcatgggaaggt 522
             ||||||||||||||||||||
Sbjct: 10827 cagggacttcatgggaaggt 10846

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     gtcgcggccacgacgatgca 227
               ||||||||||||||||||||
Sbjct: 5059884 gtcgcggccacgacgatgca 5059903

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 47       aaaaaatacgataaatatat 66
                ||||||||||||||||||||
Sbjct: 23056795 aaaaaatacgataaatatat 23056814

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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     aaaaaatacgataaatatat 66
              ||||||||||||||||||||
Sbjct: 123339 aaaaaatacgataaatatat 123358

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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   aaaaaatacgataaatatat 66
            ||||||||||||||||||||
Sbjct: 7443 aaaaaatacgataaatatat 7462

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>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full
            insert sequence
          Length = 1507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   aaaaaatacgataaatatat 66
            ||||||||||||||||||||
Sbjct: 1409 aaaaaatacgataaatatat 1428

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>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aagaaatttagccaagaaac 129
             ||||||||||||||||||||
Sbjct: 66743 aagaaatttagccaagaaac 66724

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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 473 atccaatgaatccatgcttctttg 496
           ||||||||||||| ||||||||||
Sbjct: 678 atccaatgaatccctgcttctttg 701

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>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   taggaagaaatttagccaag 125
             ||||||||||||||||||||
Sbjct: 66335 taggaagaaatttagccaag 66354

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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 475     ccaatgaatccatgcttctt 494
               ||||||||||||||||||||
Sbjct: 2827485 ccaatgaatccatgcttctt 2827466

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>gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosome 13, complete
             sequence
          Length = 152447

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gaagaccccagcttgggcag 190
             ||||||||||||||||||||
Sbjct: 61081 gaagaccccagcttgggcag 61062

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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gccaagaaacacccatgact 139
             ||||||||||||||||||||
Sbjct: 26173 gccaagaaacacccatgact 26192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,147,295
Number of Sequences: 3902068
Number of extensions: 5147295
Number of successful extensions: 94184
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93973
Number of HSP's gapped (non-prelim): 194
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result