ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
2dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4gb|AY109589.1| Zea mays CL7475_1 mRNA sequence 101 3e-18
5gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete... 44 0.58
6gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, comp... 44 0.58
7dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 44 0.58
8gb|BC056810.1| Danio rerio zgc:63733, mRNA (cDNA clone MGC:63733... 42 2.3
9gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, comp... 42 2.3
10emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 42 2.3
11gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 42 2.3
12ref|NM_200619.1| Danio rerio zgc:63733 (zgc:63733), mRNA 42 2.3
13gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 42 2.3
14gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, compl... 42 2.3
15emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 42 2.3
16ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1... 42 2.3
17ref|NM_016173.3| Homo sapiens HemK methyltransferase family memb... 42 2.3
18gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137... 42 2.3
19gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, comple... 42 2.3
20emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 42 2.3
21gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA... 42 2.3
22gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, co... 42 2.3
23emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in ... 42 2.3
24emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (... 42 2.3
25emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 42 2.3
26gb|AC145979.4| Gallus gallus BAC clone CH261-10P22 from chromoso... 42 2.3
27emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on ch... 42 2.3
28emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 42 2.3
29dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 42 2.3
30gb|AC155264.2| Mus musculus BAC clone RP23-281B4 from chromosome... 40 9.1
31ref|NM_186230.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.1
32gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, com... 40 9.1
33gb|AE002123.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 40 9.1
34emb|AJ865241.1| Cocos nucifera microsatellite DNA, clone CnCir 146 40 9.1
35gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, comple... 40 9.1
36gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 40 9.1
37emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in l... 40 9.1
38emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in ... 40 9.1
39gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, comp... 40 9.1
40gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Canc... 40 9.1
41ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.1
42ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.1
43ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 9.1
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
45gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Canc... 40 9.1
46gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 9.1
47dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
48dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clo... 40 9.1
49emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chro... 40 9.1
50emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15 40 9.1
51gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromos... 40 9.1
52emb|AL772217.10| Mouse DNA sequence from clone RP23-160K5 on chr... 40 9.1 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                            
Query: 382      tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 441
                ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 38047335 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 38047276

                                                                            
Query: 442      gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 499
                ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 38047275 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 38047216

                                                              
Query: 500      ttagagcctgagccacctagatgcaagctataaactgaaggataaa 545
                ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 38047215 ttagagccttaaccacctagatgcaagctataaactggaagataaa 38047170



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                            
Query: 256      tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 313
                |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 38047468 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 38047409

                                                         
Query: 314      acccaagacaataaaa-atatgcctgggtccattggggtta 353
                |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 38047408 acccaagacaataaaatatatctatgggtccattggggtta 38047368



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 159      agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 213
                |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 38047596 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 38047542
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                          
Query: 382    tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 441
              ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 128279 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 128220

                                                                          
Query: 442    gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 499
              ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 128219 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 128160

                                                            
Query: 500    ttagagcctgagccacctagatgcaagctataaactgaaggataaa 545
              ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 128159 ttagagccttaaccacctagatgcaagctataaactggaagataaa 128114



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 256    tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 313
              |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 128412 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 128353

                                                       
Query: 314    acccaagacaataaaa-atatgcctgggtccattggggtta 353
              |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 128352 acccaagacaataaaatatatctatgggtccattggggtta 128312



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                     
Query: 159    agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 213
              |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 128540 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 128486
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                         
Query: 382   tccaaagccttctttggagtcccatcaccgtgttacaaatggcaggaggtagtgccaagt 441
             ||||||||||||||||| || |||||||  ||||| ||||| ||||||||||  | ||||
Sbjct: 15369 tccaaagccttctttggggtaccatcactatgttagaaatgacaggaggtagcactaagt 15310

                                                                         
Query: 442   gccaaaaactaacattagcactcct--gaacctgtctctgatgaggggcacaggctctcc 499
             ||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||
Sbjct: 15309 gccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcacaggctctcc 15250

                                                           
Query: 500   ttagagcctgagccacctagatgcaagctataaactgaaggataaa 545
             ||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 15249 ttagagccttaaccacctagatgcaagctataaactggaagataaa 15204



 Score =  107 bits (54), Expect = 5e-20
 Identities = 91/101 (90%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                         
Query: 256   tcctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtg 313
             |||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |
Sbjct: 15502 tcctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccg 15443

                                                      
Query: 314   acccaagacaataaaa-atatgcctgggtccattggggtta 353
             |||||||||||||||| ||||   |||||||||||||||||
Sbjct: 15442 acccaagacaataaaatatatctatgggtccattggggtta 15402



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 159   agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 213
             |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 15630 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 15576
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>gb|AY109589.1| Zea mays CL7475_1 mRNA sequence
          Length = 1284

 Score =  101 bits (51), Expect = 3e-18
 Identities = 100/117 (85%), Gaps = 2/117 (1%)
 Strand = Plus / Plus

                                                                       
Query: 424 caggaggtagtgccaagtgccaaaaactaacattagcactcct--gaacctgtctctgat 481
           ||||||||||||||||| ||      | |||||||||||| ||  |||||||| ||||||
Sbjct: 441 caggaggtagtgccaagggctnnnnncaaacattagcactactctgaacctgtgtctgat 500

                                                                    
Query: 482 gaggggcacaggctctccttagagcctgagccacctagatgcaagctataaactgaa 538
            ||||||||||||||||||||||||||   ||||||||||||||||||| |||||||
Sbjct: 501 taggggcacaggctctccttagagccttgaccacctagatgcaagctatcaactgaa 557
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>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 629   gtgaagttgctggtggtggtgg 650
             ||||||||||||||||||||||
Sbjct: 75306 gtgaagttgctggtggtggtgg 75327
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>gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, complete sequence
          Length = 143480

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 270   atggtaatgacattggggaaga 291
             ||||||||||||||||||||||
Sbjct: 55963 atggtaatgacattggggaaga 55942
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>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
             sequence
          Length = 149431

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 270   atggtaatgacattggggaaga 291
             ||||||||||||||||||||||
Sbjct: 30839 atggtaatgacattggggaaga 30860
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>gb|BC056810.1| Danio rerio zgc:63733, mRNA (cDNA clone MGC:63733 IMAGE:2639664),
           complete cds
          Length = 2648

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 180 tcactgtgaccgataatatta 200
           |||||||||||||||||||||
Sbjct: 581 tcactgtgaccgataatatta 601
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>gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, complete sequence
          Length = 227600

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                  
Query: 628   tgtgaagttgctggtggtggtggggaggcgtgtgtgt 664
             ||||||||||||| ||| ||||||||||| |||||||
Sbjct: 42336 tgtgaagttgctgctgg-ggtggggaggcttgtgtgt 42371
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>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 448   aactaacattagcactcctga 468
             |||||||||||||||||||||
Sbjct: 97530 aactaacattagcactcctga 97510
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>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                   
Query: 628    tgtgaagttgctggtggtggtggggaggcgtgtgtgt 664
              ||||||||||||| ||| ||||||||||| |||||||
Sbjct: 138635 tgtgaagttgctgctgg-ggtggggaggcttgtgtgt 138670
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>ref|NM_200619.1| Danio rerio zgc:63733 (zgc:63733), mRNA
          Length = 2648

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 180 tcactgtgaccgataatatta 200
           |||||||||||||||||||||
Sbjct: 581 tcactgtgaccgataatatta 601
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 626    gttgtgaagttgctggtggtg 646
              |||||||||||||||||||||
Sbjct: 106661 gttgtgaagttgctggtggtg 106641
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>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence
          Length = 192324

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 636    tgctggtggtggtggggaggc 656
              |||||||||||||||||||||
Sbjct: 130564 tgctggtggtggtggggaggc 130584
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>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 626   gttgtgaagttgctggtggtg 646
             |||||||||||||||||||||
Sbjct: 86744 gttgtgaagttgctggtggtg 86724
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>ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1P1) on chromosome 22
          Length = 20254

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 626   gttgtgaagttgctggtggtg 646
             |||||||||||||||||||||
Sbjct: 12410 gttgtgaagttgctggtggtg 12430
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>ref|NM_016173.3| Homo sapiens HemK methyltransferase family member 1 (HEMK1), mRNA
          Length = 5862

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 636  tgctggtggtggtggggaggc 656
            |||||||||||||||||||||
Sbjct: 3853 tgctggtggtggtggggaggc 3833
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>gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137J4 map 15q21.3, complete
             sequence
          Length = 114149

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 635   ttgctggtggtggtggggagg 655
             |||||||||||||||||||||
Sbjct: 72338 ttgctggtggtggtggggagg 72318
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>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence
          Length = 198440

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 626   gttgtgaagttgctggtggtggtgg 650
             |||||||||||| ||||||||||||
Sbjct: 81945 gttgtgaagttggtggtggtggtgg 81969
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>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    ctgataaaacagtaaagagtt 139
              |||||||||||||||||||||
Sbjct: 715595 ctgataaaacagtaaagagtt 715575
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>gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA, complete cds
          Length = 5737

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 636  tgctggtggtggtggggaggc 656
            |||||||||||||||||||||
Sbjct: 3778 tgctggtggtggtggggaggc 3758
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>gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, complete sequence
          Length = 122302

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 644   gtggtggggaggcgtgtgtgt 664
             |||||||||||||||||||||
Sbjct: 79207 gtggtggggaggcgtgtgtgt 79227



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 644   gtggtggggaggcgtgtgtgt 664
             |||||||||||||||||||||
Sbjct: 79113 gtggtggggaggcgtgtgtgt 79133
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>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8,
             complete sequence
          Length = 217745

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   ataatattacattaaaaagca 212
             |||||||||||||||||||||
Sbjct: 10804 ataatattacattaaaaagca 10824
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>emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (from clone DKFZp686I1369)
          Length = 5778

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 636  tgctggtggtggtggggaggc 656
            |||||||||||||||||||||
Sbjct: 3991 tgctggtggtggtggggaggc 3971
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>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 626   gttgtgaagttgctggtggtg 646
             |||||||||||||||||||||
Sbjct: 96763 gttgtgaagttgctggtggtg 96743
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>gb|AC145979.4| Gallus gallus BAC clone CH261-10P22 from chromosome unknown, complete
             sequence
          Length = 243329

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 72    agagaaggtactgattatagattga 96
             ||||||||||||||| |||||||||
Sbjct: 21680 agagaaggtactgatcatagattga 21656
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>emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on chromosome 3, complete
            sequence
          Length = 25067

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 636  tgctggtggtggtggggaggc 656
            |||||||||||||||||||||
Sbjct: 5296 tgctggtggtggtggggaggc 5316
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>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 626   gttgtgaagttgctggtggtg 646
             |||||||||||||||||||||
Sbjct: 81491 gttgtgaagttgctggtggtg 81511
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>dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c23H5
          Length = 37769

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 626   gttgtgaagttgctggtggtg 646
             |||||||||||||||||||||
Sbjct: 20191 gttgtgaagttgctggtggtg 20211
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>gb|AC155264.2| Mus musculus BAC clone RP23-281B4 from chromosome 16, complete sequence
          Length = 199531

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    acagaatatttagctagatc 115
             ||||||||||||||||||||
Sbjct: 90044 acagaatatttagctagatc 90063
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>ref|NM_186230.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 618  aggatgttgttgtgaagttg 637
            ||||||||||||||||||||
Sbjct: 3257 aggatgttgttgtgaagttg 3276
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>gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, complete sequence
          Length = 109297

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 644   gtggtggggaggcgtgtgtg 663
             ||||||||||||||||||||
Sbjct: 69297 gtggtggggaggcgtgtgtg 69316
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>gb|AE002123.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 24 of 59 of the
             complete genome
          Length = 14499

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ctactttattattacaatca 182
             ||||||||||||||||||||
Sbjct: 11613 ctactttattattacaatca 11594
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>emb|AJ865241.1| Cocos nucifera microsatellite DNA, clone CnCir 146
          Length = 355

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 tcctggacctaaccatggta 275
           ||||||||||||||||||||
Sbjct: 204 tcctggacctaaccatggta 185
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>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence
          Length = 104859

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 315   cccaagacaataaaaatatgcctg 338
             ||||||||||||||||||| ||||
Sbjct: 50036 cccaagacaataaaaatatacctg 50059
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>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 636   tgctggtggtggtggggagg 655
             ||||||||||||||||||||
Sbjct: 13192 tgctggtggtggtggggagg 13173
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>emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in linkage group 21, complete
              sequence
          Length = 210246

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     tagattttacattgcattat 50
              ||||||||||||||||||||
Sbjct: 172206 tagattttacattgcattat 172225
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>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21,
             complete sequence
          Length = 242772

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tctgatgaggggcacaggct 495
             ||||||||||||||||||||
Sbjct: 54513 tctgatgaggggcacaggct 54494
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>gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, complete sequence
          Length = 201049

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tttattattacaatcactgt 186
              ||||||||||||||||||||
Sbjct: 111113 tttattattacaatcactgt 111094
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>gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 173003

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 607    gaagttatcacaggatgttg 626
              ||||||||||||||||||||
Sbjct: 111350 gaagttatcacaggatgttg 111331
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>ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 1 (LOC440910), mRNA
          Length = 4157

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 626  gttgtgaagttgctggtggt 645
            ||||||||||||||||||||
Sbjct: 2556 gttgtgaagttgctggtggt 2537
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>ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
           variant 3 (LOC440910), mRNA
          Length = 439

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 626 gttgtgaagttgctggtggt 645
           ||||||||||||||||||||
Sbjct: 156 gttgtgaagttgctggtggt 137
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>ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 2 (LOC440910), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 626  gttgtgaagttgctggtggt 645
            ||||||||||||||||||||
Sbjct: 2898 gttgtgaagttgctggtggt 2879
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 618     aggatgttgttgtgaagttg 637
               ||||||||||||||||||||
Sbjct: 1718687 aggatgttgttgtgaagttg 1718706
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>gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194925

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 607   gaagttatcacaggatgttg 626
             ||||||||||||||||||||
Sbjct: 36298 gaagttatcacaggatgttg 36279
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>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 626    gttgtgaagttgctggtggt 645
              ||||||||||||||||||||
Sbjct: 114007 gttgtgaagttgctggtggt 113988
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>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 618   aggatgttgttgtgaagttg 637
             ||||||||||||||||||||
Sbjct: 60887 aggatgttgttgtgaagttg 60906
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>dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1528A10, complete
             sequence
          Length = 34971

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 644   gtggtggggaggcgtgtgtg 663
             ||||||||||||||||||||
Sbjct: 20390 gtggtggggaggcgtgtgtg 20371
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>emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chromosome X, complete
              sequence
          Length = 208959

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    cacagcagtgttttggtatc 381
              ||||||||||||||||||||
Sbjct: 167958 cacagcagtgttttggtatc 167977
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>emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15
          Length = 2414

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 534  ctgaaggataaagaactgtt 553
            ||||||||||||||||||||
Sbjct: 2226 ctgaaggataaagaactgtt 2207
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>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete
              sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tagattgacagaatatttag 108
              ||||||||||||||||||||
Sbjct: 177259 tagattgacagaatatttag 177278
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>emb|AL772217.10| Mouse DNA sequence from clone RP23-160K5 on chromosome 2, complete
              sequence
          Length = 202067

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 1      aattgaataagaaatgtgcaacagaaca 28
              ||||||||||||||| | ||||||||||
Sbjct: 131114 aattgaataagaaatttacaacagaaca 131087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,916,578
Number of Sequences: 3902068
Number of extensions: 6916578
Number of successful extensions: 146871
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146615
Number of HSP's gapped (non-prelim): 250
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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