ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478169.1| Oryza sativa (japonica cultivar-group), mRNA 434 e-118
2dbj|AK067941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 434 e-118
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 137 5e-29
4dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D... 137 5e-29
5gb|AY059472.1| Davidia involucrata lipid transfer protein precur... 48 0.036
6gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, comple... 44 0.56
7gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, co... 42 2.2
8emb|CR847534.13| Zebrafish DNA sequence from clone DKEY-27E20 in... 42 2.2
9gb|AC159647.2| Mus musculus BAC clone RP23-66A14 from chromosome... 42 2.2
10gb|AC164978.2| Mus musculus BAC clone RP23-342O10 from chromosom... 42 2.2
11gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, comple... 42 2.2
12gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosom... 40 8.7
13gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 8.7
14gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, co... 40 8.7
15ref|XM_456160.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F24244g ... 40 8.7
16gb|AC138157.3| Carollia perspicillata clone 45N16, complete sequ... 40 8.7
17emb|BX908793.14| Zebrafish DNA sequence from clone DKEY-104G4 in... 40 8.7
18emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.7
19gb|AC158495.2| Capitella capitata clone JGIAUTO-1A8, complete se... 40 8.7
20gb|AC116560.5| Ustilago hordei clone uhobac-4k21, complete sequence 40 8.7
21gb|AC114899.5| Ustilago hordei strain 4875-4 clone uhobac-1n1, c... 40 8.7
22gb|AC016245.8| Homo sapiens chromosome 17, clone RP11-28G8, comp... 40 8.7
23gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromos... 40 8.7
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
25gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, comple... 40 8.7
26dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
27emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 i... 40 8.7
28emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-4... 40 8.7
29emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain... 40 8.7
30emb|AL929150.12| Zebrafish DNA sequence from clone CH211-196H16 ... 40 8.7
31gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 8.7
32gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, com... 40 8.7 
>ref|XM_478169.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score =  434 bits (219), Expect = e-118
 Identities = 411/475 (86%)
 Strand = Plus / Minus

                                                                       
Query: 115 acatcagagtaaaaagctattgtcctccgctggcagtcctgcactgagagtagctcgacg 174
           ||||| |||||||| |||||||| ||||| ||||||||||| || | ||| || |||| |
Sbjct: 837 acatcggagtaaaaggctattgttctccgttggcagtcctgaacagcgaggagttcgatg 778

                                                                       
Query: 175 tcgaatacttcaaactgtttcgcgctgaagaacgtcgatggcccaacaggaggaccaagc 234
           |||||||| || ||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct: 777 tcgaatacctcgaactgcttcgcactgaagaatgttgacggcccaacaggaggaccaagc 718

                                                                       
Query: 235 tcaggaggtataattagtcttctcttcccccctggtttcatgtcccgaatcccctcttca 294
           || ||||||||||| | ||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 717 tctggaggtataataattcttctcttaccacctggtttcatgtcccgtatcccttcttca 658

                                                                       
Query: 295 aaacctggaactaatgatttgttgcctagccgaattttggcaggcgaaccctggatgtag 354
           ||||||||||| | || |||||| |||| ||||||||||||||| |||||||| ||||||
Sbjct: 657 aaacctggaaccagtgttttgttccctaaccgaattttggcaggtgaaccctgaatgtag 598

                                                                       
Query: 355 gtgctatctatccttcgtcctgattcgttgtagcccacatagtgaaatataacctgctga 414
           |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 597 gtgctatctatcctgcgccctgactcattgtagcccacatagtgaaatataacctgctga 538

                                                                       
Query: 415 ccatccttcgggcaatcgcctgtaccaactttgacatcctcatatattaatccggaatcc 474
           |||||||| ||  | | ||| |||||||||||||  |||||||| | ||  || || || 
Sbjct: 537 ccatcctttggagagttgcccgtaccaactttgatgtcctcatacagtagcccagagtct 478

                                                                       
Query: 475 cgtgttatgtagttgtcgggtgtcactactttgacctgaaaaccttctctgatgaagttt 534
           || |||||||||||||| | ||||||||||||||| |  |||||||| |||||||| || 
Sbjct: 477 cgcgttatgtagttgtcagatgtcactactttgacttcgaaaccttccctgatgaaattc 418

                                                                  
Query: 535 gggaaatcatcaggtgcacggttggcttcctgaatcttcttgttctgctgaagca 589
           || ||||| ||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 417 ggaaaatcgtcaggagcccggttggcttcctggatcttcttgttctgctgaagca 363
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>dbj|AK067941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121F22, full
           insert sequence
          Length = 1179

 Score =  434 bits (219), Expect = e-118
 Identities = 411/475 (86%)
 Strand = Plus / Minus

                                                                       
Query: 115 acatcagagtaaaaagctattgtcctccgctggcagtcctgcactgagagtagctcgacg 174
           ||||| |||||||| |||||||| ||||| ||||||||||| || | ||| || |||| |
Sbjct: 837 acatcggagtaaaaggctattgttctccgttggcagtcctgaacagcgaggagttcgatg 778

                                                                       
Query: 175 tcgaatacttcaaactgtttcgcgctgaagaacgtcgatggcccaacaggaggaccaagc 234
           |||||||| || ||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct: 777 tcgaatacctcgaactgcttcgcactgaagaatgttgacggcccaacaggaggaccaagc 718

                                                                       
Query: 235 tcaggaggtataattagtcttctcttcccccctggtttcatgtcccgaatcccctcttca 294
           || ||||||||||| | ||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 717 tctggaggtataataattcttctcttaccacctggtttcatgtcccgtatcccttcttca 658

                                                                       
Query: 295 aaacctggaactaatgatttgttgcctagccgaattttggcaggcgaaccctggatgtag 354
           ||||||||||| | || |||||| |||| ||||||||||||||| |||||||| ||||||
Sbjct: 657 aaacctggaaccagtgttttgttccctaaccgaattttggcaggtgaaccctgaatgtag 598

                                                                       
Query: 355 gtgctatctatccttcgtcctgattcgttgtagcccacatagtgaaatataacctgctga 414
           |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 597 gtgctatctatcctgcgccctgactcattgtagcccacatagtgaaatataacctgctga 538

                                                                       
Query: 415 ccatccttcgggcaatcgcctgtaccaactttgacatcctcatatattaatccggaatcc 474
           |||||||| ||  | | ||| |||||||||||||  |||||||| | ||  || || || 
Sbjct: 537 ccatcctttggagagttgcccgtaccaactttgatgtcctcatacagtagcccagagtct 478

                                                                       
Query: 475 cgtgttatgtagttgtcgggtgtcactactttgacctgaaaaccttctctgatgaagttt 534
           || |||||||||||||| | ||||||||||||||| |  |||||||| |||||||| || 
Sbjct: 477 cgcgttatgtagttgtcagatgtcactactttgacttcgaaaccttccctgatgaaattc 418

                                                                  
Query: 535 gggaaatcatcaggtgcacggttggcttcctgaatcttcttgttctgctgaagca 589
           || ||||| ||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 417 ggaaaatcgtcaggagcccggttggcttcctggatcttcttgttctgctgaagca 363
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  137 bits (69), Expect = 5e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                            
Query: 298      cctggaactaatgatttgttgcctagccgaattttggcaggcgaaccctggatgtaggtg 357
                |||||||| | || |||||| |||| ||||||||||||||| |||||||| |||||||||
Sbjct: 18176662 cctggaaccagtgttttgttccctaaccgaattttggcaggtgaaccctgaatgtaggtg 18176603

                                                                     
Query: 358      ctatctatccttcgtcctgattcgttgtagcccacatagtgaaatataacctg 410
                ||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 18176602 ctatctatcctgcgccctgactcattgtagcccacatagtgaaatataacctg 18176550



 Score =  107 bits (54), Expect = 4e-20
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                            
Query: 220      acaggaggaccaagctcaggaggtataattagtcttctcttcccccctggtttcatgtcc 279
                ||||||||||||||||| ||||||||||| | ||||||||| || |||||||||||||||
Sbjct: 18176917 acaggaggaccaagctctggaggtataataattcttctcttaccacctggtttcatgtcc 18176858

                                      
Query: 280      cgaatcccctcttcaaaacctg 301
                || ||||| |||||||||||||
Sbjct: 18176857 cgtatcccttcttcaaaacctg 18176836



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                            
Query: 516      accttctctgatgaagtttgggaaatcatcaggtgcacggttggcttcctgaatcttctt 575
                |||||| |||||||| || || ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 18175697 accttccctgatgaaattcggaaaatcgtcaggagcccggttggcttcctggatcttctt 18175638

                              
Query: 576      gttctgctgaagca 589
                ||||||||||||||
Sbjct: 18175637 gttctgctgaagca 18175624



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                            
Query: 115      acatcagagtaaaaagctattgtcctccgctggcagtcctgcactgagagtagctcgacg 174
                ||||| |||||||| |||||||| ||||| ||||||||||| || | ||| || |||| |
Sbjct: 18178443 acatcggagtaaaaggctattgttctccgttggcagtcctgaacagcgaggagttcgatg 18178384

                                                               
Query: 175      tcgaatacttcaaactgtttcgcgctgaagaacgtcgatggcccaac 221
                |||||||| || ||||| ||||| |||||||| || || ||||||||
Sbjct: 18178383 tcgaatacctcgaactgcttcgcactgaagaatgttgacggcccaac 18178337



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                            
Query: 405      aacctgctgaccatccttcgggcaatcgcctgtaccaactttgacatcctcatatattaa 464
                |||||||||||||||||| ||  | | ||| |||||||||||||  |||||||| | || 
Sbjct: 18176180 aacctgctgaccatcctttggagagttgcccgtaccaactttgatgtcctcatacagtag 18176121

                                                             
Query: 465      tccggaatcccgtgttatgtagttgtcgggtgtcactactttgac 509
                 || || || || |||||||||||||| | |||||||||||||||
Sbjct: 18176120 cccagagtctcgcgttatgtagttgtcagatgtcactactttgac 18176076
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>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0477A12
          Length = 138141

 Score =  137 bits (69), Expect = 5e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                          
Query: 298    cctggaactaatgatttgttgcctagccgaattttggcaggcgaaccctggatgtaggtg 357
              |||||||| | || |||||| |||| ||||||||||||||| |||||||| |||||||||
Sbjct: 111968 cctggaaccagtgttttgttccctaaccgaattttggcaggtgaaccctgaatgtaggtg 111909

                                                                   
Query: 358    ctatctatccttcgtcctgattcgttgtagcccacatagtgaaatataacctg 410
              ||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 111908 ctatctatcctgcgccctgactcattgtagcccacatagtgaaatataacctg 111856



 Score =  107 bits (54), Expect = 4e-20
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                          
Query: 220    acaggaggaccaagctcaggaggtataattagtcttctcttcccccctggtttcatgtcc 279
              ||||||||||||||||| ||||||||||| | ||||||||| || |||||||||||||||
Sbjct: 112223 acaggaggaccaagctctggaggtataataattcttctcttaccacctggtttcatgtcc 112164

                                    
Query: 280    cgaatcccctcttcaaaacctg 301
              || ||||| |||||||||||||
Sbjct: 112163 cgtatcccttcttcaaaacctg 112142



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                          
Query: 516    accttctctgatgaagtttgggaaatcatcaggtgcacggttggcttcctgaatcttctt 575
              |||||| |||||||| || || ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 111003 accttccctgatgaaattcggaaaatcgtcaggagcccggttggcttcctggatcttctt 110944

                            
Query: 576    gttctgctgaagca 589
              ||||||||||||||
Sbjct: 110943 gttctgctgaagca 110930



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                          
Query: 115    acatcagagtaaaaagctattgtcctccgctggcagtcctgcactgagagtagctcgacg 174
              ||||| |||||||| |||||||| ||||| ||||||||||| || | ||| || |||| |
Sbjct: 113749 acatcggagtaaaaggctattgttctccgttggcagtcctgaacagcgaggagttcgatg 113690

                                                             
Query: 175    tcgaatacttcaaactgtttcgcgctgaagaacgtcgatggcccaac 221
              |||||||| || ||||| ||||| |||||||| || || ||||||||
Sbjct: 113689 tcgaatacctcgaactgcttcgcactgaagaatgttgacggcccaac 113643



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                          
Query: 405    aacctgctgaccatccttcgggcaatcgcctgtaccaactttgacatcctcatatattaa 464
              |||||||||||||||||| ||  | | ||| |||||||||||||  |||||||| | || 
Sbjct: 111486 aacctgctgaccatcctttggagagttgcccgtaccaactttgatgtcctcatacagtag 111427

                                                           
Query: 465    tccggaatcccgtgttatgtagttgtcgggtgtcactactttgac 509
               || || || || |||||||||||||| | |||||||||||||||
Sbjct: 111426 cccagagtctcgcgttatgtagttgtcagatgtcactactttgac 111382
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>gb|AY059472.1| Davidia involucrata lipid transfer protein precursor, mRNA,
           complete cds
          Length = 1049

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 107 tgcaaacaacatcagagtaaaaagctattgtcctcc 142
           |||| |||| ||| ||||||||||||||||||||||
Sbjct: 146 tgcacacaatatcggagtaaaaagctattgtcctcc 181
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>gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, complete sequence
          Length = 124740

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 291    ttcaaaacctggaactaatgat 312
              ||||||||||||||||||||||
Sbjct: 117844 ttcaaaacctggaactaatgat 117823
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>gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, complete sequence
          Length = 189787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 600   ctcataaggatttatggtttt 620
             |||||||||||||||||||||
Sbjct: 32303 ctcataaggatttatggtttt 32323
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>emb|CR847534.13| Zebrafish DNA sequence from clone DKEY-27E20 in linkage group 3, complete
              sequence
          Length = 211145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 567    aatcttcttgttctgctgaag 587
              |||||||||||||||||||||
Sbjct: 137143 aatcttcttgttctgctgaag 137123
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>gb|AC159647.2| Mus musculus BAC clone RP23-66A14 from chromosome 12, complete sequence
          Length = 213946

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 570    cttcttgttctgctgaagcaa 590
              |||||||||||||||||||||
Sbjct: 155910 cttcttgttctgctgaagcaa 155930
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>gb|AC164978.2| Mus musculus BAC clone RP23-342O10 from chromosome 14, complete
             sequence
          Length = 206840

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   aacatcagagtaaaaagctat 134
             |||||||||||||||||||||
Sbjct: 81704 aacatcagagtaaaaagctat 81684
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>gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, complete sequence
          Length = 178779

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 386    agcccacatagtgaaatataacctg 410
              |||||||| ||||||||||||||||
Sbjct: 143360 agcccacagagtgaaatataacctg 143336
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>gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosome 9, complete sequence
          Length = 176272

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 506    tgacctgaaaaccttctctgatga 529
              |||||||||||| |||||||||||
Sbjct: 129814 tgacctgaaaactttctctgatga 129837
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    gtcctccgctggcagtcctgcact 159
              |||||||||||||| |||||||||
Sbjct: 809853 gtcctccgctggcactcctgcact 809830
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>gb|AC099572.12| Mus musculus chromosome 15, clone RP23-16A17, complete sequence
          Length = 200229

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    acagggttgtaggaggagaa 68
             ||||||||||||||||||||
Sbjct: 46869 acagggttgtaggaggagaa 46888
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>ref|XM_456160.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F24244g predicted mRNA
          Length = 2784

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 caactttgacatcctcatat 459
           ||||||||||||||||||||
Sbjct: 496 caactttgacatcctcatat 477
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>gb|AC138157.3| Carollia perspicillata clone 45N16, complete sequence
          Length = 114626

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    acaacaatagctaacatttt 42
             ||||||||||||||||||||
Sbjct: 88552 acaacaatagctaacatttt 88571
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>emb|BX908793.14| Zebrafish DNA sequence from clone DKEY-104G4 in linkage group 3,
             complete sequence
          Length = 102377

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   ctttcctcataaggatttat 614
             ||||||||||||||||||||
Sbjct: 75550 ctttcctcataaggatttat 75569
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 440     caactttgacatcctcatat 459
               ||||||||||||||||||||
Sbjct: 2264098 caactttgacatcctcatat 2264117
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>gb|AC158495.2| Capitella capitata clone JGIAUTO-1A8, complete sequence
          Length = 42314

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    gatgatcaagtgcaaacaac 116
             ||||||||||||||||||||
Sbjct: 17658 gatgatcaagtgcaaacaac 17677
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>gb|AC116560.5| Ustilago hordei clone uhobac-4k21, complete sequence
          Length = 100958

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   ccaacaggaggaccaagctcagga 240
             |||| |||||||||||||||||||
Sbjct: 16928 ccaagaggaggaccaagctcagga 16951



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 217  ccaacaggaggaccaagctcagga 240
            |||| |||||||||||||||||||
Sbjct: 4983 ccaagaggaggaccaagctcagga 5006
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>gb|AC114899.5| Ustilago hordei strain 4875-4 clone uhobac-1n1, complete sequence
          Length = 100185

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ccaacaggaggaccaagctcagga 240
             |||| |||||||||||||||||||
Sbjct: 52778 ccaagaggaggaccaagctcagga 52755



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ccaacaggaggaccaagctcagga 240
             |||| |||||||||||||||||||
Sbjct: 40833 ccaagaggaggaccaagctcagga 40810
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>gb|AC016245.8| Homo sapiens chromosome 17, clone RP11-28G8, complete sequence
          Length = 163042

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aacaatagctaacatttttt 44
              ||||||||||||||||||||
Sbjct: 132558 aacaatagctaacatttttt 132577
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>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete
              sequence
          Length = 216348

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tgtaggaggagaatgctgca 75
              ||||||||||||||||||||
Sbjct: 106863 tgtaggaggagaatgctgca 106844
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 362      ctatccttcgtcctgattcgttgt 385
                ||||||||||||| ||||||||||
Sbjct: 21321911 ctatccttcgtccagattcgttgt 21321934
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>gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, complete sequence
          Length = 175490

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    ttgacatcctcatatattaa 464
              ||||||||||||||||||||
Sbjct: 137018 ttgacatcctcatatattaa 137037
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>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0656E03
          Length = 181786

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 362    ctatccttcgtcctgattcgttgt 385
              ||||||||||||| ||||||||||
Sbjct: 117287 ctatccttcgtccagattcgttgt 117310
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>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19,
              complete sequence
          Length = 171679

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    atagtgaaatataacctgct 412
              ||||||||||||||||||||
Sbjct: 102634 atagtgaaatataacctgct 102615
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>emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-468E2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194815

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    acaacatcagagtaaaaagc 131
              ||||||||||||||||||||
Sbjct: 166594 acaacatcagagtaaaaagc 166613
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>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364
          Length = 526707

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ccaacaggaggaccaagctcagga 240
              |||| |||||||||||||||||||
Sbjct: 326783 ccaagaggaggaccaagctcagga 326760



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ccaacaggaggaccaagctcagga 240
              |||| |||||||||||||||||||
Sbjct: 314838 ccaagaggaggaccaagctcagga 314815
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>emb|AL929150.12| Zebrafish DNA sequence from clone CH211-196H16 in linkage group 1,
             complete sequence
          Length = 229480

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 500   ctactttgacctgaaaaccttctc 523
             |||||||||| |||||||||||||
Sbjct: 51056 ctactttgacttgaaaaccttctc 51079
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     acaacaatagctaacatttt 42
              ||||||||||||||||||||
Sbjct: 229653 acaacaatagctaacatttt 229672
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>gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, complete sequence
          Length = 138388

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   gaatcccctcttcaaaacct 300
             ||||||||||||||||||||
Sbjct: 33588 gaatcccctcttcaaaacct 33607


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,206,024
Number of Sequences: 3902068
Number of extensions: 5206024
Number of successful extensions: 92713
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92355
Number of HSP's gapped (non-prelim): 354
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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