>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)|
            (Protein GYMNOS)
          Length = 1384

 Score = 40.0 bits (92), Expect(2) = 9e-08
 Identities = 28/153 (18%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
 Frame = -3

Query: 538  EVLRELPPLVPISAKEV---ASDGSTDQAHLSHLYNKMCGVLEDSGARALNSFCGDKAAS 368
            E+L  LP   PI+++E+   A D +  +  ++  YN+MC +L+++   ++ ++  ++  S
Sbjct: 1229 EMLDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPS 1288

Query: 367  ASLANSLHQFEKVCEDVDRVLRVQENGAATPKEEV---VDAIVEEAKPPQVPPQDAGAVA 197
              +  S    + +  +++ +L +  + + + +++    ++ +  +    +  P   G V 
Sbjct: 1289 TKVNESFRALKSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDTAEETKPLRGGVVD 1348

Query: 196  ANGVGPSTVKPEDKMEIDG*CVGMKTESKPPSV 98
             N V       E    +D      K E KP ++
Sbjct: 1349 LNVVEGEENIAEASGSVDVKMEEAKEEEKPKNM 1381



 Score = 35.8 bits (81), Expect(2) = 9e-08
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = -2

Query: 704  DIQRKIVEFIRKRYHILEKCLDIEYA 627
            D+QR++VEF++KR  +LEK ++ EYA
Sbjct: 1167 DMQRRLVEFVKKRVLLLEKAMNYEYA 1192

>MUCB1_XENLA (P38565) Integumentary mucin B.1 (FIM-B.1) (Fragment)|
          Length = 398

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -3

Query: 610 TPVPDDLTEQNVPMGHSPAVPDISEVLRELPPLVPISAKEVASDGSTDQAHLSH 449
           TP P + T  +VP G S   P  +  LR +PP V   A  V +   T      H
Sbjct: 69  TPAPSETTVPSVPSGESTPAPSETTELRIIPPEVSTVAVPVTTGQITPAVTTEH 122

>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
 Frame = -3

Query: 559  PAVPDISEVLREL-PPLVPISAKEVASDGSTDQAHLSHLYNKMCGVLEDSGARALNSFCG 383
            P++   +E L+ L P + P++ +E   D   D + +S          ED   R  +    
Sbjct: 862  PSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRIS----------EDETERNGDDGTH 911

Query: 382  DKAASASLANSLHQFEKVCEDVDRVLRV--QENGAATPKEEVVDAIVEEAKPPQVPPQDA 209
            DK              K+C  V +V+    QENG    +EE  +    EA+PP VPPQ +
Sbjct: 912  DKGL------------KICRTVTQVVPAEGQENGQREEEEEEKE---PEAEPP-VPPQVS 955

Query: 208  GAVA 197
              VA
Sbjct: 956  VEVA 959

>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 949

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
 Frame = -3

Query: 574 PMGHSPAVPDISEVLRELPPLVPISAKEVASDGSTDQAHLSHLYNKMCGVLE-DSGARAL 398
           P GH P  P +      + P+  +++      GS D   LS   + +  + E + G+   
Sbjct: 487 PSGHHPLPPQMLSAASHITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERNKGSGPR 546

Query: 397 NSFCGDKAASASL-----ANSLHQFEKVCEDVDRVLRVQENGAATPKEEVV-----DAIV 248
           +S   DK+  +++     A++ HQ  +V   +     +    +  P+ +VV     D ++
Sbjct: 547 SSMKVDKSFGSAMMDVLPASAPHQPVQVLSGLSESSSMSPTVSFGPRTKVVHASTLDRVL 606

Query: 247 EEAKPPQVPPQDAGAVAANGVGPSTV 170
           + A+ P +  +   + AA G  PSTV
Sbjct: 607 KTAQQPALVVET--STAATGT-PSTV 629

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -3

Query: 295 ENGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKME 149
           E  A T   EV  A+ EE K  +  P +  A AA    PST   E+K E
Sbjct: 141 EAAAETTSREV--AVEEEKKEEEAAPAEPAAAAAEAAAPSTEVVEEKKE 187

>EVX1_HUMAN (P49640) Homeobox even-skipped homolog protein 1 (EVX-1)|
          Length = 407

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -3

Query: 298 QENGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGP 179
           +E G   P+EE VD +   A  P   PQ AGA A  G GP
Sbjct: 58  RERGGGGPEEEPVDGLAGSAAGPGAEPQVAGA-AMLGPGP 96

>TNNT_DROME (P19351) Troponin T, skeletal muscle (Protein upheld) (Protein|
           intended thorax)
          Length = 397

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 295 ENGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEID 143
           E   ++ +EEVV+   EE KPPQ P +  G        P  +K +D+   D
Sbjct: 5   EEYTSSEEEEVVEETREETKPPQTPAEGEG-------DPEFIKRQDQKRSD 48

>RGNEF_MOUSE (P97433) Rho-guanine nucleotide exchange factor (Rho-interacting|
           protein 2) (RhoGEF) (RIP2)
          Length = 1693

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -3

Query: 292 NGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVGMKTES 113
           +GAA  +EEV +  +E  + P    +DA ++ +   GPS  + +D++ +D    G+K   
Sbjct: 295 SGAAETEEEVRN--LESGRSPSEEEEDAKSIKSQVDGPSEHEDQDRLALDRSFDGLKKSK 352

Query: 112 KPPS 101
             P+
Sbjct: 353 HVPA 356

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
 Frame = -3

Query: 427 VLEDSGARALNSFCGDKAASASLANSLHQFEKVCEDVDRVLRVQENGAATPKEEVVDA-- 254
           V EDS    LN F G      +   +L +FE + E+V R         A  K+   DA  
Sbjct: 77  VYEDSQPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAVAQNTAAAKKSASDAST 136

Query: 253 IVEEAKPPQVPPQDAGAVAANGVG 182
              EA        D+   A+   G
Sbjct: 137 SAREAATHAADAADSARAASTSAG 160

>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1534

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 422 KHTTHLVVKMGKVCLVS*AIRSHFFGRDWYKRGKFSQHFT 541
           KH  H +V    +C     I S     DW KRG  S HFT
Sbjct: 583 KHNVHEIVSASVICCHRVKIDSPMRSEDWQKRGMLS-HFT 621

>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 517  PLVPISAKEVASDGSTDQAHLSHLYNKMCGVLEDSGARALNSF--CGDKAASASLANSLH 344
            P VP    +   DG  DQ H  HLY   C  + +SG +AL+    CG       L + L 
Sbjct: 1379 PFVPGKKIDHVKDGVMDQVHAKHLYK--CWSVANSG-KALHHIYACG-------LKDELR 1428

Query: 343  QFEKVCEDVDRVL 305
              +KV E   R+L
Sbjct: 1429 PLDKVKEGKKRLL 1441

>IQGA3_HUMAN (Q86VI3) Ras GTPase-activating-like protein IQGAP3|
          Length = 1631

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -3

Query: 565  HSPAVPDISEVLRELPPLVPISAKEVASDGSTDQAHLS---HLYNKMCGV---LEDSGAR 404
            H   + ++ E L ELP +  +  + +A+DG TD + L     L NK  G+    +DS  R
Sbjct: 1304 HQDPLHELLEDLGELPTIPDLIGESIAADGHTDLSKLEVSLTLTNKFEGLEADADDSNTR 1363

Query: 403  AL 398
            +L
Sbjct: 1364 SL 1365

>MAAY4_SCHCO (P37935) Mating-type protein A-alpha Y4|
          Length = 928

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = -1

Query: 462 HTFPIFTTRCVVCLKTAVHVHSI-------RSAVTRQLPRV*PTASISLRKYVRTLIGS* 304
           + +P +  R ++  KT +    I       R      LPR+ PTA I + ++ R L    
Sbjct: 174 NAYPTYADRRILAEKTGMLTRQITVWFQNHRRRAKGPLPRMSPTAKIPMEEFERQLENLA 233

Query: 303 ESKRTALLPPKRKW*MPSSKKPSL 232
                 LLPP  +   P ++  SL
Sbjct: 234 RKIVPVLLPPTLRRFAPGNENKSL 257

>GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3) (Rho-GDI|
           gamma) (Rho-GDI2)
          Length = 225

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 313 RVLRVQENGAATPKEEVVDAIVEEAKPP 230
           RVL   ++G +TP +EV+D IV E + P
Sbjct: 24  RVLLADKDGESTPSDEVLDEIVPEYQAP 51

>NAPA_HELPJ (Q9ZMJ1) Neutrophil-activating protein A (NAP A) (Bacterioferritin)|
          Length = 144

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -3

Query: 598 DDLTEQNVPMGHSPAVPDISEVLR----ELPPLVPISAKEVASDGSTDQAHLSHLYNKMC 431
           DDL E+ V +GH P V  +SE ++    +        +K++  +   D  HL   + ++ 
Sbjct: 52  DDLAERIVQLGHHPLV-TLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELS 110

Query: 430 GVLEDSGARALNSFCGDKAA 371
              E  G +   ++  D+ A
Sbjct: 111 NTAEKEGDKVTVTYADDQLA 130

>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2|
          Length = 891

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 286 AATPKEEVVDAIVEEAKPPQVP---PQDAGAVAANGVGPSTVKPEDKMEIDG 140
           AA+PK+E V      +KPP +P   P D+G        PS+  P  + E  G
Sbjct: 56  AASPKKETVAESAPSSKPPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPG 107

>MURG_COXBU (Q820X3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 358

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 424 LEDSGARALNSFCGDKAASASLANSLHQFEKVCEDVDRVLRVQENGAATPKEEVVDAIVE 245
           LE +GA  + S       S +  + +  FE+  +D DR+L + EN     K E V  ++ 
Sbjct: 295 LEQAGAAIIIS-----EESLTETDLMRWFEQFAQDRDRLLTMAENARKLAKPEAVQRVIA 349

Query: 244 EAK 236
           + K
Sbjct: 350 QCK 352

>PACN3_HUMAN (Q9UKS6) Protein kinase C and casein kinase substrate in neurons|
           protein 3 (SH3 domain-containing protein 6511)
           (Endophilin I)
          Length = 424

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 361 LANSLHQFEKVCEDVDRVLRVQENGAATPKEEVVDAIVEEAKPPQVPPQDAGA 203
           +A +  QFE+   D  R +  +E G  +P E  + +IV        PPQ  G+
Sbjct: 292 MAMNWPQFEEWSLDTQRTISRKEKGGRSPDEVTLTSIVPTRDGTAPPPQSPGS 344

>AROC_IDILO (Q5QW40) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 505 ISAKEVASDGSTDQAHLSHLYNKMCGVLEDSGARALNSFCGDKAASASLANSLHQFEKVC 326
           I+ K +   G   QA L+ + + +   ++    R    FCGD  A  ++   + Q +K  
Sbjct: 140 IADKLLRQQGIQVQAALTQMGDVVASNIDWQQVRENELFCGDANAVEAMQELIRQLKKEG 199

Query: 325 EDVDRVLRVQENG 287
           + +   +RVQ  G
Sbjct: 200 DSIGAKIRVQATG 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,978,956
Number of Sequences: 219361
Number of extensions: 2187305
Number of successful extensions: 6844
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6837
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)