Clone Name	rbags9c08
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PK...	145	2e-31
2	dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clon...	137	6e-29
3	gb|AY062188.1|AY062187S2 Oryza sativa (indica cultivar-group) ch...	62	3e-06
4	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	62	3e-06
5	dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D...	62	3e-06
6	dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D...	62	3e-06
7	gb|AY104705.1| Zea mays PCO106433 mRNA sequence	58	4e-05
8	gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, co...	44	0.63
9	gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, c...	44	0.63
10	emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in li...	44	0.63
11	emb|CR378667.1| Photobacterium profundum SS9; segment 5/12	42	2.5
12	gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, com...	42	2.5
13	gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, com...	42	2.5
14	gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, compl...	42	2.5
15	gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete...	42	2.5
16	gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, com...	42	2.5
17	ref|XM_523395.1| PREDICTED: Pan troglodytes similar to RGD, leuc...	40	9.8
18	ref|XM_519928.1| PREDICTED: Pan troglodytes similar to mitochond...	40	9.8
19	gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotei...	40	9.8
20	gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26...	40	9.8
21	gb|BC009190.2| Homo sapiens mitochondrial ribosomal protein L13,...	40	9.8
22	ref|NM_014078.4| Homo sapiens mitochondrial ribosomal protein L1...	40	9.8
23	gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome	40	9.8
24	emb|Z69384.1|CET11G6 Caenorhabditis elegans Cosmid T11G6, comple...	40	9.8
25	emb|AL845465.2| Mouse DNA sequence from clone RP23-119B10 on chr...	40	9.8
26	gb|BC021744.2| Homo sapiens mitochondrial ribosomal protein L13,...	40	9.8
27	gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, compl...	40	9.8
28	gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, compl...	40	9.8
29	gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, comple...	40	9.8
30	gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome ...	40	9.8
31	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
32	gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, comple...	40	9.8
33	gb|AC138761.4| Homo sapiens chromosome 17, clone RP11-1109M24, c...	40	9.8
34	dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
35	dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
36	gb|AF112214.1|AF112214 Homo sapiens ribosomal protein L13 mRNA, ...	40	9.8
37	gb|CP000009.1| Gluconobacter oxydans 621H, complete genome	40	9.8
38	emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on ch...	40	9.8
39	dbj|AP005364.2| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.8
40	gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus lon...	40	9.8
41	gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1...	40	9.8
42	gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosom...	40	9.8
43	gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, co...	40	9.8
44	dbj|AB049640.1| Homo sapiens MRPL13 mRNA for mitochondrial ribos...	40	9.8

---

>gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PKL) mRNA, complete
            cds
          Length = 4443

 Score =  145 bits (73), Expect = 2e-31
 Identities = 292/363 (80%), Gaps = 4/363 (1%)
 Strand = Plus / Minus

                                                                        
Query: 336  tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccgcagaacgaa 395
            ||||||| ||||||||| ||||||| ||  | ||||||||||||||||||| |   ||| 
Sbjct: 3842 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccgaaatgcgag 3783

                                                                        
Query: 396  ttgagtgcacgtgcaccgctgtcttcaagcacaccacacatcttgttgtaaagatgggaa 455
            ||||||||| |  || | ||||||||||| |||   ||||||||||||||||||||||||
Sbjct: 3782 ttgagtgcaggaacagcactgtcttcaaggacaaagcacatcttgttgtaaagatgggaa 3723

                                                                        
Query: 456  aggtgtgcctggtcagttgagccatcagaagccacttctttggcagagattggtacaaga 515
            |  |||| ||| ||||||| ||| ||||  ||||||||||||   || || ||| |||| 
Sbjct: 3722 acttgtgactgatcagttgtgccttcaggcgccacttctttg---gaaataggttcaagg 3666

                                                                        
Query: 516  gggggaagttctctcaacacttcactgatatctggaacagctgggctatgtcccatagga 575
               || | |||||||| || |||||||   |||||||| || || ||||| ||   ||||
Sbjct: 3665 acaggcaattctctcagcatttcactgtagtctggaacggccggtctatgaccaccagga 3606

                                                                        
Query: 576  acattttgttcagtaagatcatcaggaacaggagtttttcgtttttatcacagcatattc 635
            | || ||||||||  ||||||||||||||||| |||||| ||||| |||||||| |||||
Sbjct: 3605 aaatcttgttcagcgagatcatcaggaacaggggttttt-gttttaatcacagcgtattc 3547

                                                                        
Query: 636  aatgtccaagcatttttctagaatatggtatctctttctgataaactcaacaatctttct 695
            ||  | ||| ||| | || | || ||||||||||||||| ||||||||||| ||||||||
Sbjct: 3546 aagattcaaacatctctccaaaagatggtatctctttctaataaactcaactatctttct 3487

               
Query: 696  ctg 698
            |||
Sbjct: 3486 ctg 3484



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 129  cctacacattaaccatcgatttccattttgtcctccggctttacagt 175
            |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 4091 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 4045

---

>dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023A02, full
            insert sequence
          Length = 1605

 Score =  137 bits (69), Expect = 6e-29
 Identities = 291/363 (80%), Gaps = 4/363 (1%)
 Strand = Plus / Minus

                                                                        
Query: 336  tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccgcagaacgaa 395
            ||||||| ||||||||| ||||||| ||  | ||||||||||||||||||| |   ||| 
Sbjct: 1086 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccgaaatgcgag 1027

                                                                        
Query: 396  ttgagtgcacgtgcaccgctgtcttcaagcacaccacacatcttgttgtaaagatgggaa 455
            ||||||||| |  || | ||||||||||| |||   |||||||||||||||||||| |||
Sbjct: 1026 ttgagtgcaggaacagcactgtcttcaaggacaaagcacatcttgttgtaaagatgtgaa 967

                                                                        
Query: 456  aggtgtgcctggtcagttgagccatcagaagccacttctttggcagagattggtacaaga 515
            |  |||| ||| ||||||| ||| ||||  ||||||||||||   || || ||| |||| 
Sbjct: 966  acttgtgactgatcagttgtgccttcaggcgccacttctttg---gaaataggttcaagg 910

                                                                        
Query: 516  gggggaagttctctcaacacttcactgatatctggaacagctgggctatgtcccatagga 575
               || | |||||||| || |||||||   |||||||| || || ||||| ||   ||||
Sbjct: 909  acaggcaattctctcagcatttcactgtagtctggaacggccggtctatgaccaccagga 850

                                                                        
Query: 576  acattttgttcagtaagatcatcaggaacaggagtttttcgtttttatcacagcatattc 635
            | || ||||||||  ||||||||||||||||| |||||| ||||| |||||||| |||||
Sbjct: 849  aaatcttgttcagcgagatcatcaggaacaggggttttt-gttttaatcacagcgtattc 791

                                                                        
Query: 636  aatgtccaagcatttttctagaatatggtatctctttctgataaactcaacaatctttct 695
            ||  | ||| ||| | || | || ||||||||||||||| ||||||||||| ||||||||
Sbjct: 790  aagattcaaacatctctccaaaagatggtatctctttctaataaactcaactatctttct 731

               
Query: 696  ctg 698
            |||
Sbjct: 730  ctg 728



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 129  cctacacattaaccatcgatttccattttgtcctccggctttacagt 175
            |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 1335 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 1289

---

>gb|AY062188.1|AY062187S2 Oryza sativa (indica cultivar-group) chromatin-remodeling factor
           CHD3 (PKL) gene, exon 27 and complete cds
          Length = 1007

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 129 cctacacattaaccatcgatttccattttgtcctccggctttacagt 175
           |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 56  cctacaaattaactatcgatttccattttgtcctccgccttaacagt 10

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                      
Query: 660     atggtatctctttctgataaactcaacaatctttctctg 698
               ||||||||||||||| ||||||||||| |||||||||||
Sbjct: 4180628 atggtatctctttctaataaactcaactatctttctctg 4180666



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                           
Query: 437     cttgttgtaaagatgggaaaggtgtgcctggtcagttgagccatcagaagccacttcttt 496
               ||||||||||||||||||||  |||| ||| ||||||| ||| ||||  |||||||||||
Sbjct: 4178854 cttgttgtaaagatgggaaacttgtgactgatcagttgtgccttcaggcgccacttcttt 4178913

                  
Query: 497     ggc 499
               |||
Sbjct: 4178914 ggc 4178916



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                              
Query: 129     cctacacattaaccatcgatttccattttgtcctccggctttacagt 175
               |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 4178383 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 4178429



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                  
Query: 336     tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 386
               ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 4178632 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 4178682



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 572     aggaacattttgttcagtaagatcatcaggaacaggagttttt 614
               ||||| || ||||||||  ||||||||||||||||| ||||||
Sbjct: 4180431 aggaaaatcttgttcagcgagatcatcaggaacaggggttttt 4180473

---

>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 660   atggtatctctttctgataaactcaacaatctttctctg 698
             ||||||||||||||| ||||||||||| |||||||||||
Sbjct: 25849 atggtatctctttctaataaactcaactatctttctctg 25887



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 437   cttgttgtaaagatgggaaaggtgtgcctggtcagttgagccatcagaagccacttcttt 496
             ||||||||||||||||||||  |||| ||| ||||||| ||| ||||  |||||||||||
Sbjct: 24075 cttgttgtaaagatgggaaacttgtgactgatcagttgtgccttcaggcgccacttcttt 24134

                
Query: 497   ggc 499
             |||
Sbjct: 24135 ggc 24137



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 129   cctacacattaaccatcgatttccattttgtcctccggctttacagt 175
             |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 23604 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 23650



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 336   tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 386
             ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 23853 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 23903



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 572   aggaacattttgttcagtaagatcatcaggaacaggagttttt 614
             ||||| || ||||||||  ||||||||||||||||| ||||||
Sbjct: 25652 aggaaaatcttgttcagcgagatcatcaggaacaggggttttt 25694

---

>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0036B04
          Length = 136159

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 660    atggtatctctttctgataaactcaacaatctttctctg 698
              ||||||||||||||| ||||||||||| |||||||||||
Sbjct: 113887 atggtatctctttctaataaactcaactatctttctctg 113925



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 437    cttgttgtaaagatgggaaaggtgtgcctggtcagttgagccatcagaagccacttcttt 496
              ||||||||||||||||||||  |||| ||| ||||||| ||| ||||  |||||||||||
Sbjct: 112113 cttgttgtaaagatgggaaacttgtgactgatcagttgtgccttcaggcgccacttcttt 112172

                 
Query: 497    ggc 499
              |||
Sbjct: 112173 ggc 112175



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 129    cctacacattaaccatcgatttccattttgtcctccggctttacagt 175
              |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 111642 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 111688



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 336    tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 386
              ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 111891 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 111941



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 572    aggaacattttgttcagtaagatcatcaggaacaggagttttt 614
              ||||| || ||||||||  ||||||||||||||||| ||||||
Sbjct: 113690 aggaaaatcttgttcagcgagatcatcaggaacaggggttttt 113732

---

>gb|AY104705.1| Zea mays PCO106433 mRNA sequence
          Length = 668

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 116/145 (80%)
 Strand = Plus / Minus

                                                                       
Query: 408 gcaccgctgtcttcaagcacaccacacatcttgttgtaaagatgggaaaggtgtgcctgg 467
           ||||| || ||||||||||| ||||||||||| ||||| ||||||| ||  |||  ||| 
Sbjct: 189 gcaccactctcttcaagcactccacacatcttattgtagagatggggaacttgtaactga 130

                                                                       
Query: 468 tcagttgagccatcagaagccacttctttggcagagattggtacaagagggggaagttct 527
            ||| || ||| |||||| ||| ||| |||| ||| |||||  |||||  ||| | ||| 
Sbjct: 129 ccagctgtgccctcagaaaccaattcattggtagaaattggctcaagattgggcaattcc 70

                                    
Query: 528 ctcaacacttcactgatatctggaa 552
           | ||||| |||||||||||||||||
Sbjct: 69  cgcaacagttcactgatatctggaa 45

---

>gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, complete sequence
          Length = 208551

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 610   tttttcgtttttatcacagcatattc 635
             ||||||||||||||||||| ||||||
Sbjct: 69195 tttttcgtttttatcacagaatattc 69220



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 614   tcgtttttatcacagcatattcaa 637
             ||||||||||||||| ||||||||
Sbjct: 95179 tcgtttttatcacaggatattcaa 95202

---

>gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, complete sequence
          Length = 179026

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 610   tttttcgtttttatcacagcatattc 635
             ||||||||||||||||||| ||||||
Sbjct: 54304 tttttcgtttttatcacagaatattc 54329



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 614   tcgtttttatcacagcatattcaa 637
             ||||||||||||||| ||||||||
Sbjct: 80289 tcgtttttatcacaggatattcaa 80312

---

>emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in linkage group 4, complete
              sequence
          Length = 206047

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 608    agtttttcgtttttatcacagc 629
              ||||||||||||||||||||||
Sbjct: 181452 agtttttcgtttttatcacagc 181473

---

>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
          Length = 349080

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 568   ccataggaacattttgttcagtaag 592
             |||||||| ||||||||||||||||
Sbjct: 68924 ccataggatcattttgttcagtaag 68900

---

>gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, complete sequence
          Length = 174458

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 616   gtttttatcacagcatattca 636
             |||||||||||||||||||||
Sbjct: 74989 gtttttatcacagcatattca 74969

---

>gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, complete sequence
          Length = 107318

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 616   gtttttatcacagcatattca 636
             |||||||||||||||||||||
Sbjct: 80742 gtttttatcacagcatattca 80722

---

>gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, complete sequence
          Length = 173692

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 616    gtttttatcacagcatattca 636
              |||||||||||||||||||||
Sbjct: 167999 gtttttatcacagcatattca 167979

---

>gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete sequence
          Length = 183358

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 621    tatcacagcatattcaatgtc 641
              |||||||||||||||||||||
Sbjct: 134413 tatcacagcatattcaatgtc 134393

---

>gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, complete sequence
          Length = 177461

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 616   gtttttatcacagcatattca 636
             |||||||||||||||||||||
Sbjct: 92732 gtttttatcacagcatattca 92752

---

>ref|XM_523395.1| PREDICTED: Pan troglodytes similar to RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein
            (LOC468003), mRNA
          Length = 4032

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 346  ggaggctgttggctagactcgcgg 369
            ||||||||||||||| ||||||||
Sbjct: 1525 ggaggctgttggctacactcgcgg 1502

---

>ref|XM_519928.1| PREDICTED: Pan troglodytes similar to mitochondrial ribosomal
           protein L13 (LOC464359), mRNA
          Length = 853

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 648 tttttctagaatatggtatctctt 671
           |||| |||||||||||||||||||
Sbjct: 101 ttttgctagaatatggtatctctt 124

---

>gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotein M, DNA replication
             protein, glycoprotein, DNA replication protein, FLICE
             inhibitory protein and v-cyclin genes, complete cds, and
             tegument protein gene, partial cds
          Length = 133661

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   tttgggggtagcagcgccgt 291
             ||||||||||||||||||||
Sbjct: 56028 tttgggggtagcagcgccgt 56047

---

>gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26 of 73 of the
            complete sequence
          Length = 10129

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 590  aagatcatcaggaacaggag 609
            ||||||||||||||||||||
Sbjct: 3674 aagatcatcaggaacaggag 3655

---

>gb|BC009190.2| Homo sapiens mitochondrial ribosomal protein L13, mRNA (cDNA clone
           MGC:15170 IMAGE:3956315), complete cds
          Length = 860

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 648 tttttctagaatatggtatctctt 671
           |||| |||||||||||||||||||
Sbjct: 83  ttttgctagaatatggtatctctt 106

---

>ref|NM_014078.4| Homo sapiens mitochondrial ribosomal protein L13 (MRPL13), nuclear
           gene encoding mitochondrial protein, mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 648 tttttctagaatatggtatctctt 671
           |||| |||||||||||||||||||
Sbjct: 352 ttttgctagaatatggtatctctt 375

---

>gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome
          Length = 137969

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   tttgggggtagcagcgccgt 291
             ||||||||||||||||||||
Sbjct: 55828 tttgggggtagcagcgccgt 55847

---

>emb|Z69384.1|CET11G6 Caenorhabditis elegans Cosmid T11G6, complete sequence
          Length = 29461

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tcctcacatactttctcaaa 340
             ||||||||||||||||||||
Sbjct: 12995 tcctcacatactttctcaaa 12976

---

>emb|AL845465.2| Mouse DNA sequence from clone RP23-119B10 on chromosome 11, complete
             sequence
          Length = 37402

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   cgctgtcttcaagcacacca 431
             ||||||||||||||||||||
Sbjct: 18304 cgctgtcttcaagcacacca 18323

---

>gb|BC021744.2| Homo sapiens mitochondrial ribosomal protein L13, mRNA (cDNA clone
           MGC:33899 IMAGE:5260243), complete cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 648 tttttctagaatatggtatctctt 671
           |||| |||||||||||||||||||
Sbjct: 331 ttttgctagaatatggtatctctt 354

---

>gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, complete sequence
          Length = 181925

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 648    tttttctagaatatggtatctctt 671
              |||| |||||||||||||||||||
Sbjct: 102787 ttttgctagaatatggtatctctt 102764

---

>gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, complete sequence
          Length = 118603

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 678   aaactcaacaatctttctct 697
             ||||||||||||||||||||
Sbjct: 46183 aaactcaacaatctttctct 46202

---

>gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, complete sequence
          Length = 96489

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 678   aaactcaacaatctttctct 697
             ||||||||||||||||||||
Sbjct: 32137 aaactcaacaatctttctct 32118

---

>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 656   gaatatggtatctctttctg 675
             ||||||||||||||||||||
Sbjct: 92408 gaatatggtatctctttctg 92427

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 422      aagcacaccacacatcttgt 441
                ||||||||||||||||||||
Sbjct: 19082689 aagcacaccacacatcttgt 19082670

---

>gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, complete sequence
          Length = 147185

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 436    tcttgttgtaaagatgggaa 455
              ||||||||||||||||||||
Sbjct: 101862 tcttgttgtaaagatgggaa 101881

---

>gb|AC138761.4| Homo sapiens chromosome 17, clone RP11-1109M24, complete sequence
          Length = 155327

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 609   gtttttcgtttttatcacagcatattca 636
             |||| ||||||||||||||| |||||||
Sbjct: 80977 gtttctcgtttttatcacaggatattca 81004

---

>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1051_A08
          Length = 137583

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    aagcacaccacacatcttgt 441
              ||||||||||||||||||||
Sbjct: 107476 aagcacaccacacatcttgt 107457

---

>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0086F04
          Length = 163579

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 422  aagcacaccacacatcttgt 441
            ||||||||||||||||||||
Sbjct: 5054 aagcacaccacacatcttgt 5035

---

>gb|AF112214.1|AF112214 Homo sapiens ribosomal protein L13 mRNA, complete cds
          Length = 862

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 648 tttttctagaatatggtatctctt 671
           |||| |||||||||||||||||||
Sbjct: 81  ttttgctagaatatggtatctctt 104

---

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 597     tcaggaacaggagtttttcg 616
               ||||||||||||||||||||
Sbjct: 1656440 tcaggaacaggagtttttcg 1656459

---

>emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on chromosome 2, complete
             sequence
          Length = 163351

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   tcttcaagcacaccacacat 436
             ||||||||||||||||||||
Sbjct: 22444 tcttcaagcacaccacacat 22463

---

>dbj|AP005364.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1970D8, complete
              sequence
          Length = 168850

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 648    tttttctagaatatggtatctctt 671
              |||| |||||||||||||||||||
Sbjct: 124382 ttttgctagaatatggtatctctt 124359

---

>gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus long unique region, 80 putative
             ORF's and kaposin gene, complete cds
          Length = 137508

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   tttgggggtagcagcgccgt 291
             ||||||||||||||||||||
Sbjct: 55729 tttgggggtagcagcgccgt 55748

---

>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 527    tctcaacacttcactgatatctgg 550
              |||||||||||||||||| |||||
Sbjct: 600016 tctcaacacttcactgatttctgg 600039

---

>gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosome 14, complete
             sequence
          Length = 210602

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 666   tctctttctgataaactcaa 685
             ||||||||||||||||||||
Sbjct: 81609 tctctttctgataaactcaa 81590

---

>gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, complete sequence
          Length = 198756

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 609    gtttttcgtttttatcacagcatattca 636
              |||| ||||||||||||||| |||||||
Sbjct: 134694 gtttctcgtttttatcacaggatattca 134667

---

>dbj|AB049640.1| Homo sapiens MRPL13 mRNA for mitochondrial ribosomal protein L13
           (L13mt), complete cds
          Length = 839

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 648 tttttctagaatatggtatctctt 671
           |||| |||||||||||||||||||
Sbjct: 78  ttttgctagaatatggtatctctt 101


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,072,193
Number of Sequences: 3902068
Number of extensions: 6072193
Number of successful extensions: 112648
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112349
Number of HSP's gapped (non-prelim): 295
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---