ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9c07 |
|---|---|
| Clone Library Name | barley_pub |
>RL111_ARATH (P42795) 60S ribosomal protein L11-1 (L16A)| Length = 182 Score = 46.6 bits (109), Expect = 2e-05 Identities = 22/32 (68%), Positives = 22/32 (68%) Frame = -2 Query: 97 CKAXXGIHQRXTKXXAMXWFQVKYXGVILXKS 2 CKA GI R TK AM WFQVKY GVIL KS Sbjct: 146 CKARVGIQHRVTKDDAMKWFQVKYEGVILNKS 177
>RL11_MEDSA (P46287) 60S ribosomal protein L11 (L5)| Length = 181 Score = 46.6 bits (109), Expect = 2e-05 Identities = 22/32 (68%), Positives = 22/32 (68%) Frame = -2 Query: 97 CKAXXGIHQRXTKXXAMXWFQVKYXGVILXKS 2 CKA GI R TK AM WFQVKY GVIL KS Sbjct: 146 CKARVGIQHRVTKDDAMKWFQVKYEGVILNKS 177
>RL112_ARATH (P42794) 60S ribosomal protein L11-2 (L16)| Length = 182 Score = 45.1 bits (105), Expect = 6e-05 Identities = 21/32 (65%), Positives = 21/32 (65%) Frame = -2 Query: 97 CKAXXGIHQRXTKXXAMXWFQVKYXGVILXKS 2 CK GI R TK AM WFQVKY GVIL KS Sbjct: 146 CKTRVGIQHRVTKDDAMKWFQVKYEGVILNKS 177
>RL11_ORYSA (O22540) 60S ribosomal protein L11| Length = 182 Score = 42.7 bits (99), Expect = 3e-04 Identities = 19/32 (59%), Positives = 21/32 (65%) Frame = -2 Query: 97 CKAXXGIHQRXTKXXAMXWFQVKYXGVILXKS 2 CK+ GI R TK AM WFQVKY GVI K+ Sbjct: 146 CKSRVGIQHRVTKEDAMKWFQVKYEGVIFNKA 177
>RL11_DROME (P46222) 60S ribosomal protein L11| Length = 184 Score = 33.1 bits (74), Expect = 0.23 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R TK AM WFQ KY G+IL Sbjct: 157 GFQHRLTKEDAMKWFQQKYDGIIL 180
>RL11_CHLRE (P50881) 60S ribosomal protein L11| Length = 170 Score = 32.7 bits (73), Expect = 0.30 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 94 KAXXGIHQRXTKXXAMXWFQVKYXGVILXKS 2 KA G+ + TK A+ WFQ ++ GV+L K+ Sbjct: 137 KAHVGVKHKVTKEDAIKWFQQEFDGVVLNKA 167
>RL11_RAT (P62914) 60S ribosomal protein L11| Length = 177 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R +K AM WFQ KY G+IL Sbjct: 151 GAKHRISKEEAMRWFQQKYDGIIL 174
>RL11_MOUSE (Q9CXW4) 60S ribosomal protein L11| Length = 177 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R +K AM WFQ KY G+IL Sbjct: 151 GAKHRISKEEAMRWFQQKYDGIIL 174
>RL11_ICTPU (Q90YV7) 60S ribosomal protein L11| Length = 177 Score = 30.8 bits (68), Expect = 1.1 Identities = 14/24 (58%), Positives = 14/24 (58%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R K AM WFQ KY GVIL Sbjct: 151 GFKHRIRKREAMRWFQQKYDGVIL 174
>RL11_HUMAN (P62913) 60S ribosomal protein L11 (CLL-associated antigen KW-12)| Length = 177 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R +K AM WFQ KY G+IL Sbjct: 151 GAKHRISKEEAMRWFQQKYDGIIL 174
>RL11_CHILA (Q6QMZ8) 60S ribosomal protein L11| Length = 177 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R +K AM WFQ KY G+IL Sbjct: 151 GAKHRISKEEAMRWFQQKYDGIIL 174
>RL11_SPOFR (Q962U2) 60S ribosomal protein L11| Length = 195 Score = 29.3 bits (64), Expect = 3.3 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 64 TKXXAMXWFQVKYXGVIL 11 TK AM WFQ KY G+IL Sbjct: 174 TKEDAMKWFQQKYDGIIL 191
>RL11_PIG (Q29205) 60S ribosomal protein L11| Length = 177 Score = 28.9 bits (63), Expect = 4.3 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 82 GIHQRXTKXXAMXWFQVKYXGVIL 11 G R +K AM WFQ K+ G+IL Sbjct: 151 GAKHRISKEEAMRWFQQKHDGIIL 174
>RL11B_YEAST (Q3E757) 60S ribosomal protein L11-B (L16) (YL16) (39B) (RP39)| Length = 173 Score = 28.1 bits (61), Expect = 7.3 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 97 CKAXXGIHQRXTKXXAMXWFQVKYXGVILXK 5 CK G + TK + WF+ KY +L K Sbjct: 143 CKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 173
>RL11A_YEAST (P0C0W9) 60S ribosomal protein L11-A (L16) (YL16) (39A) (RP39)| Length = 173 Score = 28.1 bits (61), Expect = 7.3 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 97 CKAXXGIHQRXTKXXAMXWFQVKYXGVILXK 5 CK G + TK + WF+ KY +L K Sbjct: 143 CKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,064,545 Number of Sequences: 219361 Number of extensions: 84809 Number of successful extensions: 190 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 184 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 190 length of database: 80,573,946 effective HSP length: 8 effective length of database: 78,819,058 effective search space used: 1891657392 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
