ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF475122.1| Triticum aestivum ribosomal protein mRNA, partial... 139 2e-30
2gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome... 98 5e-18
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-18
4dbj|AK070605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 5e-18
5dbj|AK062150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 5e-18
6gb|AY104691.1| Zea mays PCO079292 mRNA sequence 90 1e-15
7gb|AF022736.1|AF022736 Oryza sativa ribosomal protein mRNA, comp... 86 2e-14
8ref|NM_188340.1| Oryza sativa (japonica cultivar-group), Ozsa809... 82 3e-13
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-13
10gb|AY846822.1| Triticum aestivum ribosomal protein L11 mRNA, com... 82 3e-13
11dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-13
12dbj|AK067763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 3e-13
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-11
14dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-11
15dbj|AK120417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-11
16gb|BT016915.1| Zea mays clone Contig748 mRNA sequence 74 8e-11
17gb|AY104690.1| Zea mays PCO097022 mRNA sequence 74 8e-11
18gb|AY632360.1| Gossypium hirsutum BAC 106I22, complete sequence 68 5e-09
19gb|AY632359.1| Gossypium hirsutum BAC 155C17, complete sequence 68 5e-09
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-07
21dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-07
22gb|BT016507.1| Zea mays clone Contig340 mRNA sequence 60 1e-06
23gb|BT017969.1| Zea mays clone EL01N0524A06.c mRNA sequence 60 1e-06
24gb|AY109492.1| Zea mays CL7136_1 mRNA sequence 60 1e-06
25ref|NM_180806.1| Arabidopsis thaliana structural constituent of ... 54 7e-05
26ref|NM_123945.2| Arabidopsis thaliana structural constituent of ... 54 7e-05
27gb|AC147006.18| Medicago truncatula clone mth2-62m1, complete se... 54 7e-05
28gb|AY078021.1| Arabidopsis thaliana AT4g18730/F28A21_140 mRNA, c... 54 7e-05
29gb|AF385722.1|AF385722 Arabidopsis thaliana AT4g18730/F28A21_140... 54 7e-05
30gb|AY086211.1| Arabidopsis thaliana clone 22470 mRNA, complete s... 54 7e-05
31dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 54 7e-05
32emb|AJ295006.1|NTA295006 Nicotiana tabacum partial mRNA for ribo... 52 3e-04
33gb|AY496127.1| Capsicum annuum ribosomal protein L11-like protei... 50 0.001
34gb|BT017676.1| Zea mays clone EL01N0442H11.c mRNA sequence 48 0.004
35gb|AY110740.1| Zea mays CL7136_2 mRNA sequence 48 0.004
36gb|DQ284460.1| Solanum tuberosum clone 057H03 ribosomal protein ... 46 0.018
37dbj|D64115.1| Glycine max DNA for cysteine proteinase inhibitor,... 44 0.070
38gb|DQ235186.1| Solanum tuberosum clone 164B08 ribosomal protein ... 40 1.1
39gb|AY395690.1| Solanum brevidens ribosomal protein L11-like prot... 40 1.1
40ref|NM_115732.2| Arabidopsis thaliana structural constituent of ... 38 4.3
41emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, B... 38 4.3
42emb|BX825712.1|CNS0A52M Arabidopsis thaliana Full-length cDNA Co... 38 4.3
43gb|AY085232.1| Arabidopsis thaliana clone 14042 mRNA, complete s... 38 4.3 
>gb|AF475122.1| Triticum aestivum ribosomal protein mRNA, partial cds
          Length = 366

 Score =  139 bits (70), Expect = 2e-30
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntcct 60
           ||||||||| |||||||||||||| |||||||||||||||||| |||||||| |  ||||
Sbjct: 355 gggacttgttcaggatgacaccctcatacttgacctggaaccacttcatggcgtcttcct 296

                                                 
Query: 61  tggtcancctttggtggatcccaanangggccttgcat 98
           |||||| ||||||||||||||||| | |||||||||||
Sbjct: 295 tggtcaccctttggtggatcccaacacgggccttgcat 258
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>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02,
            complete sequence
          Length = 75456

 Score = 97.6 bits (49), Expect = 5e-18
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 12   aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
            ||||||||||||| |||||||||||||||||| ||||||||||  |||||||||| ||| 
Sbjct: 4620 aggatgacaccctcatacttgacctggaaccacttcatggcatcttccttggtcaccctg 4561

                                      
Query: 72   tggtggatcccaanangggccttgca 97
            || ||||| |||| | ||| ||||||
Sbjct: 4560 tgctggattccaacacgggacttgca 4535
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 97.6 bits (49), Expect = 5e-18
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                           
Query: 12      aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
               ||||||||||||| |||||||||||||||||| ||||||||||  |||||||||| ||| 
Sbjct: 6566566 aggatgacaccctcatacttgacctggaaccacttcatggcatcttccttggtcaccctg 6566507

                                         
Query: 72      tggtggatcccaanangggccttgca 97
               || ||||| |||| | ||| ||||||
Sbjct: 6566506 tgctggattccaacacgggacttgca 6566481
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>dbj|AK070605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055B20, full
           insert sequence
          Length = 916

 Score = 97.6 bits (49), Expect = 5e-18
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           ||||||||||||| |||||||||||||||||| ||||||||||  |||||||||| ||| 
Sbjct: 593 aggatgacaccctcatacttgacctggaaccacttcatggcatcttccttggtcaccctg 534

                                     
Query: 72  tggtggatcccaanangggccttgca 97
           || ||||| |||| | ||| ||||||
Sbjct: 533 tgctggattccaacacgggacttgca 508
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>dbj|AK062150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H04, full
            insert sequence
          Length = 1584

 Score = 97.6 bits (49), Expect = 5e-18
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 12   aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
            ||||||||||||| |||||||||||||||||| ||||||||||  |||||||||| ||| 
Sbjct: 1367 aggatgacaccctcatacttgacctggaaccacttcatggcatcttccttggtcaccctg 1308

                                      
Query: 72   tggtggatcccaanangggccttgca 97
            || ||||| |||| | ||| ||||||
Sbjct: 1307 tgctggattccaacacgggacttgca 1282
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>gb|AY104691.1| Zea mays PCO079292 mRNA sequence
          Length = 842

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||||||||  ||||||||||||||||| ||||| ||||  |||||||||| ||| 
Sbjct: 592 aggatgacaccctcgtacttgacctggaaccatttcatagcatcctccttggtcaccctg 533

                                     
Query: 72  tggtggatcccaanangggccttgca 97
           || |||||||||| | ||| ||||||
Sbjct: 532 tgctggatcccaacacgggacttgca 507
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>gb|AF022736.1|AF022736 Oryza sativa ribosomal protein mRNA, complete cds
          Length = 905

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 14  gatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctttg 73
           ||||||||||| |||||||||||||||||| ||||||||||  |||||||||| ||| ||
Sbjct: 573 gatgacaccctcatacttgacctggaaccacttcatggcatcttccttggtcaccctgtg 514

                 
Query: 74  gtggat 79
            |||||
Sbjct: 513 ctggat 508
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>ref|NM_188340.1| Oryza sativa (japonica cultivar-group), Ozsa8091 predicted mRNA
          Length = 549

 Score = 81.8 bits (41), Expect = 3e-13
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||||||||  ||||||||||||||||| ||||||||||  |||||||| | ||| 
Sbjct: 521 aggatgacaccctcgtacttgacctggaaccacttcatggcatcctccttggtgaccctg 462

                                     
Query: 72  tggtggatcccaanangggccttgca 97
           || ||||| |||| | ||| ||||||
Sbjct: 461 tgctggataccaacacgggacttgca 436
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 3e-13
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                           
Query: 12      aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
               |||||||||||||  ||||||||||||||||| ||||||||||  |||||||| | ||| 
Sbjct: 5771006 aggatgacaccctcgtacttgacctggaaccacttcatggcatcctccttggtgaccctg 5770947

                                         
Query: 72      tggtggatcccaanangggccttgca 97
               || ||||| |||| | ||| ||||||
Sbjct: 5770946 tgctggataccaacacgggacttgca 5770921
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>gb|AY846822.1| Triticum aestivum ribosomal protein L11 mRNA, complete cds
          Length = 549

 Score = 81.8 bits (41), Expect = 3e-13
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntcct 60
           |||||||||  |||||||||||||  ||||||||||||||||| |||||||| |  ||||
Sbjct: 533 gggacttgttgaggatgacaccctcgtacttgacctggaaccacttcatggcgtcctcct 474

                              
Query: 61  tggtcancctttggtggat 79
           |||| | ||| ||||||||
Sbjct: 473 tggtgaccctctggtggat 455
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score = 81.8 bits (41), Expect = 3e-13
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                         
Query: 12    aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
             |||||||||||||  ||||||||||||||||| ||||||||||  |||||||| | ||| 
Sbjct: 95708 aggatgacaccctcgtacttgacctggaaccacttcatggcatcctccttggtgaccctg 95649

                                       
Query: 72    tggtggatcccaanangggccttgca 97
             || ||||| |||| | ||| ||||||
Sbjct: 95648 tgctggataccaacacgggacttgca 95623
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>dbj|AK067763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120K02, full
           insert sequence
          Length = 875

 Score = 81.8 bits (41), Expect = 3e-13
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||||||||  ||||||||||||||||| ||||||||||  |||||||| | ||| 
Sbjct: 611 aggatgacaccctcgtacttgacctggaaccacttcatggcatcctccttggtgaccctg 552

                                     
Query: 72  tggtggatcccaanangggccttgca 97
           || ||||| |||| | ||| ||||||
Sbjct: 551 tgctggataccaacacgggacttgca 526
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 12      aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
               |||||||| || | |||||||||||||||||| ||||||||||  |||||||||| ||  
Sbjct: 7686256 aggatgactccttcatacttgacctggaaccacttcatggcatcctccttggtcacccgg 7686197

                            
Query: 72      tggtggatcccaa 84
               || ||||||||||
Sbjct: 7686196 tgctggatcccaa 7686184
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>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_A12
          Length = 149089

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                         
Query: 12    aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
             |||||||| || | |||||||||||||||||| ||||||||||  |||||||||| ||  
Sbjct: 22521 aggatgactccttcatacttgacctggaaccacttcatggcatcctccttggtcacccgg 22462

                          
Query: 72    tggtggatcccaa 84
             || ||||||||||
Sbjct: 22461 tgctggatcccaa 22449
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>dbj|AK120417.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C14, full
           insert sequence
          Length = 844

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||| || | |||||||||||||||||| ||||||||||  |||||||||| ||  
Sbjct: 598 aggatgactccttcatacttgacctggaaccacttcatggcatcctccttggtcacccgg 539

                        
Query: 72  tggtggatcccaa 84
           || ||||||||||
Sbjct: 538 tgctggatcccaa 526
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>gb|BT016915.1| Zea mays clone Contig748 mRNA sequence
          Length = 812

 Score = 73.8 bits (37), Expect = 8e-11
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           ||||||||||| | |||||||||||||||||| |||||||  |  |||||||||| ||| 
Sbjct: 218 aggatgacaccttcatacttgacctggaaccacttcatggagtcctccttggtcacccta 277

                                     
Query: 72  tggtggatcccaanangggccttgca 97
           || || ||||||| | ||| ||||||
Sbjct: 278 tgctgaatcccaacacgggacttgca 303
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>gb|AY104690.1| Zea mays PCO097022 mRNA sequence
          Length = 836

 Score = 73.8 bits (37), Expect = 8e-11
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           ||||||||||| | |||||||||||||||||| |||||||  |  |||||||||| ||| 
Sbjct: 646 aggatgacaccttcatacttgacctggaaccacttcatggagtcctccttggtcacccta 587

                                     
Query: 72  tggtggatcccaanangggccttgca 97
           || || ||||||| | ||| ||||||
Sbjct: 586 tgctgaatcccaacacgggacttgca 561
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>gb|AY632360.1| Gossypium hirsutum BAC 106I22, complete sequence
          Length = 135862

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 1     gggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntcct 60
             |||||||||  ||||||||||| | ||| |||||||||||||| ||||||||||  ||||
Sbjct: 74529 gggacttgttaaggatgacaccttcatatttgacctggaaccacttcatggcatcttcct 74588

              
Query: 61    t 61
             |
Sbjct: 74589 t 74589
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>gb|AY632359.1| Gossypium hirsutum BAC 155C17, complete sequence
          Length = 103930

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 1     gggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntcct 60
             |||||||||  ||||||||||| | ||| |||||||||||||| ||||||||||  ||||
Sbjct: 68775 gggacttgttaaggatgacaccttcatatttgacctggaaccacttcatggcatcttcct 68834

              
Query: 61    t 61
             |
Sbjct: 68835 t 68835
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 27       tacttgacctggaaccanttcatggcatnntccttggtca 66
                ||||||||||||||||| ||||||||||  ||||||||||
Sbjct: 20503523 tacttgacctggaaccacttcatggcatcctccttggtca 20503562
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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0659D09
          Length = 168253

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 27    tacttgacctggaaccanttcatggcatnntccttggtca 66
             ||||||||||||||||| ||||||||||  ||||||||||
Sbjct: 75818 tacttgacctggaaccacttcatggcatcctccttggtca 75857
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>gb|BT016507.1| Zea mays clone Contig340 mRNA sequence
          Length = 788

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||||||||  ||||| ||||||||||| |||||||| |  || ||||||| ||| 
Sbjct: 532 aggatgacaccctcgtacttcacctggaaccacttcatggcgtcttctttggtcaccctg 473

                        
Query: 72  tggtggatcccaa 84
           || ||||| ||||
Sbjct: 472 tgctggatgccaa 460
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>gb|BT017969.1| Zea mays clone EL01N0524A06.c mRNA sequence
          Length = 796

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||||||||  ||||| ||||||||||| |||||||| |  || ||||||| ||| 
Sbjct: 265 aggatgacaccctcgtacttcacctggaaccacttcatggcgtcttctttggtcaccctg 324

                        
Query: 72  tggtggatcccaa 84
           || ||||| ||||
Sbjct: 325 tgctggatgccaa 337
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>gb|AY109492.1| Zea mays CL7136_1 mRNA sequence
          Length = 1162

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggatgacaccctnatacttgacctggaaccanttcatggcatnntccttggtcancctt 71
           |||||||||||||  ||||| ||||||||||| |||||||| |  || ||||||| ||| 
Sbjct: 646 aggatgacaccctcgtacttcacctggaaccacttcatggcgtcttctttggtcaccctg 587

                        
Query: 72  tggtggatcccaa 84
           || ||||| ||||
Sbjct: 586 tgctggatgccaa 574
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>ref|NM_180806.1| Arabidopsis thaliana structural constituent of ribosome AT5G45775
           transcript variant AT5G45775.1 mRNA, complete cds
          Length = 828

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 3   gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
           |||||||  ||||| || || | |||||||||||||||||| ||||| ||||  ||||||
Sbjct: 593 gacttgttgaggataactccttcatacttgacctggaaccatttcattgcatcatccttg 534

             
Query: 63  gt 64
           ||
Sbjct: 533 gt 532
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>ref|NM_123945.2| Arabidopsis thaliana structural constituent of ribosome AT5G45775
           transcript variant AT5G45775.2 mRNA, complete cds
          Length = 827

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 3   gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
           |||||||  ||||| || || | |||||||||||||||||| ||||| ||||  ||||||
Sbjct: 592 gacttgttgaggataactccttcatacttgacctggaaccatttcattgcatcatccttg 533

             
Query: 63  gt 64
           ||
Sbjct: 532 gt 531
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>gb|AC147006.18| Medicago truncatula clone mth2-62m1, complete sequence
          Length = 126833

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 76/95 (80%)
 Strand = Plus / Minus

                                                                         
Query: 3     gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
             |||||||  ||||| ||||||| ||| || ||||||||||| ||||||| ||  ||||| 
Sbjct: 26459 gacttgttgaggatcacaccctcatatttcacctggaaccacttcatggaatcatccttt 26400

                                                
Query: 63    gtcancctttggtggatcccaanangggccttgca 97
             || | ||  || |||||||||| | | ||||||||
Sbjct: 26399 gttacccgatgttggatcccaacacgagccttgca 26365
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>gb|AY078021.1| Arabidopsis thaliana AT4g18730/F28A21_140 mRNA, complete cds
          Length = 549

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 3   gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
           |||||||  ||||| || || | |||||||||||||||||| ||||| ||||  ||||||
Sbjct: 530 gacttgttgaggataactccttcatacttgacctggaaccatttcattgcatcatccttg 471

             
Query: 63  gt 64
           ||
Sbjct: 470 gt 469
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>gb|AF385722.1|AF385722 Arabidopsis thaliana AT4g18730/F28A21_140 mRNA, complete cds
          Length = 749

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 3   gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
           |||||||  ||||| || || | |||||||||||||||||| ||||| ||||  ||||||
Sbjct: 592 gacttgttgaggataactccttcatacttgacctggaaccatttcattgcatcatccttg 533

             
Query: 63  gt 64
           ||
Sbjct: 532 gt 531
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>gb|AY086211.1| Arabidopsis thaliana clone 22470 mRNA, complete sequence
          Length = 741

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 3   gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
           |||||||  ||||| || || | |||||||||||||||||| ||||| ||||  ||||||
Sbjct: 593 gacttgttgaggataactccttcatacttgacctggaaccatttcattgcatcatccttg 534

             
Query: 63  gt 64
           ||
Sbjct: 533 gt 532
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>dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRA19
          Length = 86722

 Score = 54.0 bits (27), Expect = 7e-05
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 3     gacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntccttg 62
             |||||||  ||||| || || | |||||||||||||||||| ||||| ||||  ||||||
Sbjct: 69346 gacttgttgaggataactccttcatacttgacctggaaccatttcattgcatcatccttg 69405

               
Query: 63    gt 64
             ||
Sbjct: 69406 gt 69407
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>emb|AJ295006.1|NTA295006 Nicotiana tabacum partial mRNA for ribosomal protein L11-like
           protein (rbl11-like)
          Length = 813

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 2   ggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggc 52
           ||||||||  ||||| ||||| | ||| |||||||||||||| ||||||||
Sbjct: 603 ggacttgttaaggataacaccttcatatttgacctggaaccacttcatggc 553
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>gb|AY496127.1| Capsicum annuum ribosomal protein L11-like protein mRNA, complete
           cds
          Length = 769

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 67/83 (80%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntcctt 61
           ||||||||  ||||| ||||| | ||| |||||||||||||| ||||| || |  |||||
Sbjct: 566 ggacttgttaaggataacaccttcatatttgacctggaaccacttcattgcgtcttcctt 507

                                  
Query: 62  ggtcancctttggtggatcccaa 84
            || | ||| || ||||||||||
Sbjct: 506 tgtgaccctgtgttggatcccaa 484
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>gb|BT017676.1| Zea mays clone EL01N0442H11.c mRNA sequence
          Length = 858

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 27  tacttgacctggaaccanttcatggcatnntccttggtcancct 70
           ||||||||||||||||| |||||||  |  |||||||||| |||
Sbjct: 557 tacttgacctggaaccacttcatggagtcctccttggtcaccct 514
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>gb|AY110740.1| Zea mays CL7136_2 mRNA sequence
          Length = 730

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 27  tacttgacctggaaccanttcatggcatnntccttggtcancct 70
           ||||||||||||||||| |||||||  |  |||||||||| |||
Sbjct: 431 tacttgacctggaaccacttcatggagtcctccttggtcaccct 388
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>gb|DQ284460.1| Solanum tuberosum clone 057H03 ribosomal protein L11 protein-like
           mRNA, complete cds
          Length = 1167

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 2   ggacttgtncaggatgacaccctnatacttgacctggaaccanttcat 49
           ||||||||  ||||| ||||| | ||| |||||||||||||| |||||
Sbjct: 916 ggacttgttaaggataacaccttcatatttgacctggaaccacttcat 869
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>dbj|D64115.1| Glycine max DNA for cysteine proteinase inhibitor, complete cds
          Length = 5863

 Score = 44.1 bits (22), Expect = 0.070
 Identities = 50/61 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    gggacttgtncaggatgacaccctnatacttgacctggaaccanttcatggcatnntcct 60
            |||||||||  ||||| || |||| ||| || ||||||||||| ||||| ||||  ||||
Sbjct: 5685 gggacttgttaaggatcactccctcatatttcacctggaaccacttcatagcatcctcct 5744

             
Query: 61   t 61
            |
Sbjct: 5745 t 5745
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>gb|DQ235186.1| Solanum tuberosum clone 164B08 ribosomal protein L11-like protein
           mRNA, complete cds
          Length = 699

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 33/38 (86%)
 Strand = Plus / Minus

                                                 
Query: 12  aggatgacaccctnatacttgacctggaaccanttcat 49
           ||||| ||||| | ||| |||||||||||||| |||||
Sbjct: 530 aggataacaccttcatatttgacctggaaccacttcat 493
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>gb|AY395690.1| Solanum brevidens ribosomal protein L11-like protein mRNA, partial
           cds
          Length = 626

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 33/38 (86%)
 Strand = Plus / Minus

                                                 
Query: 12  aggatgacaccctnatacttgacctggaaccanttcat 49
           ||||| ||||| | ||| |||||||||||||| |||||
Sbjct: 470 aggataacaccttcatatttgacctggaaccacttcat 433
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>ref|NM_115732.2| Arabidopsis thaliana structural constituent of ribosome AT3G58700
           mRNA, complete cds
          Length = 784

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 33  acctggaaccanttcatggcat 54
           ||||||||||| ||||||||||
Sbjct: 598 acctggaaccatttcatggcat 577
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>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10
          Length = 90273

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 33    acctggaaccanttcatggcat 54
             ||||||||||| ||||||||||
Sbjct: 12622 acctggaaccatttcatggcat 12601
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>emb|BX825712.1|CNS0A52M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL58ZD04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 701

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 33  acctggaaccanttcatggcat 54
           ||||||||||| ||||||||||
Sbjct: 553 acctggaaccatttcatggcat 532
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>gb|AY085232.1| Arabidopsis thaliana clone 14042 mRNA, complete sequence
          Length = 723

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 33  acctggaaccanttcatggcat 54
           ||||||||||| ||||||||||
Sbjct: 598 acctggaaccatttcatggcat 577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,708
Number of Sequences: 3902068
Number of extensions: 140708
Number of successful extensions: 6246
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6191
Number of HSP's gapped (non-prelim): 55
length of query: 98
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 77
effective length of database: 17,151,101,840
effective search space: 1320634841680
effective search space used: 1320634841680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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