ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8n06 |
|---|---|
| Clone Library Name | barley_pub |
>CB004_MOUSE (Q91VH6) Protein C2orf4 homolog| Length = 297 Score = 152 bits (383), Expect = 1e-36 Identities = 69/132 (52%), Positives = 93/132 (70%), Gaps = 3/132 (2%) Frame = -1 Query: 628 VVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKNHGAIHKS 449 ++P+LVGA++ E +G+L +KY+ DP N F VSSDFCHWG RF Y+YYD++ G I++S Sbjct: 153 IIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRS 212 Query: 448 IEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLLHMLKHCL---TKIKVGFVR 278 IE LD+MGM IIE DP +F YL++Y NTICGRHPI VLL+ + + F+ Sbjct: 213 IEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLN 272 Query: 277 YEQSSQCKSMRD 242 Y QSSQC+S +D Sbjct: 273 YAQSSQCRSWQD 284
>CB004_HUMAN (Q9Y316) Protein C2orf4 (C21orf19-like protein)| Length = 297 Score = 150 bits (380), Expect = 2e-36 Identities = 68/132 (51%), Positives = 93/132 (70%), Gaps = 3/132 (2%) Frame = -1 Query: 628 VVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKNHGAIHKS 449 ++P+LVGA++ E +G+L +KY+ DP N F VSSDFCHWG RF Y+YYD++ G I++S Sbjct: 153 IIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRS 212 Query: 448 IEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLLHMLKHCL---TKIKVGFVR 278 IE LD+MGM IIE DP +F YL++Y NTICGRHPI VLL+ + + F+ Sbjct: 213 IEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLN 272 Query: 277 YEQSSQCKSMRD 242 Y QSSQC++ +D Sbjct: 273 YAQSSQCRNWQD 284
>YC4P_CAEEL (Q22915) Hypothetical UPF0103 protein C37C3.8 in chromosome V| Length = 350 Score = 117 bits (292), Expect = 4e-26 Identities = 55/134 (41%), Positives = 86/134 (64%), Gaps = 5/134 (3%) Frame = -1 Query: 628 VVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKNHG-AIHK 452 +VP+LVG++ + YG + A Y++DP+N F +SSDFCHWG RFS++ YD++ I++ Sbjct: 202 IVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGERFSFSPYDRHSSIPIYE 261 Query: 451 SIEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLLHMLKHCLTK----IKVGF 284 I +D+ GM IET +P AF YL++ +NTICGR+PI ++L +H + F Sbjct: 262 QITNMDKQGMSAIETLNPAAFNDYLKKTQNTICGRNPILIMLQAAEHFRISNNHTHEFRF 321 Query: 283 VRYEQSSQCKSMRD 242 + Y QS++ +S D Sbjct: 322 LHYTQSNKVRSSVD 335
>YAY4_SCHPO (Q10212) Hypothetical UPF0103 protein C4H3.04c in chromosome I| Length = 309 Score = 108 bits (270), Expect = 1e-23 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 18/149 (12%) Frame = -1 Query: 634 VKVVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYY--DKNH-- 467 VK+VPI++GA+ S + + L++Y+ D N F +SSDFCHWG RF YT Y D N Sbjct: 151 VKIVPIMIGALTSTTMMAAAKFLSQYIKDESNSFVISSDFCHWGRRFGYTLYLNDTNQLE 210 Query: 466 --------------GAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVL 329 I++SI LD +GM+IIET D F +YL+ +NTICGR+PI ++ Sbjct: 211 DAVLKYKRRGGPTSPKIYESISNLDHIGMKIIETKSSDDFSEYLKTTQNTICGRYPIELI 270 Query: 328 LHMLKHCLTKIKVGFVRYEQSSQCKSMRD 242 + ++ + F+ Y QSS + + D Sbjct: 271 MKSMECANFSERFKFISYAQSSHVELVTD 299
>YJX8_YEAST (P47085) Hypothetical UPF0103 protein YJR008w| Length = 338 Score = 87.4 bits (215), Expect = 3e-17 Identities = 59/165 (35%), Positives = 79/165 (47%), Gaps = 34/165 (20%) Frame = -1 Query: 634 VKVVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYY-------- 479 VKV P++V + + G +L++Y+ DP N F VSSDFCHWG RF YT Y Sbjct: 161 VKVFPMMVSHNSVDVDRCIGNILSEYIKDPNNLFIVSSDFCHWGRRFQYTGYVGSKEELN 220 Query: 478 ------------------DKNHGAIHKSIEALDRMGMEIIE---TGDP-DAFKQYLQEYE 365 + I +SIE +DR M+ + G+ DA+KQYL+ Sbjct: 221 DAIQEETEVEMLTARSKLSHHQVPIWQSIEIMDRYAMKTLSDTPNGERYDAWKQYLEITG 280 Query: 364 NTICGRHPISVLLHMLKHCL----TKIKVGFVRYEQSSQCKSMRD 242 NTICG PISV+L L + IK + Y QSS S+ D Sbjct: 281 NTICGEKPISVILSALSKIRDAGPSGIKFQWPNYSQSSHVTSIDD 325
>Y1626_PYRHO (O59292) UPF0103 protein PH1626| Length = 291 Score = 33.5 bits (75), Expect = 0.56 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Frame = -1 Query: 643 GHNVKVVPILVGAVNSQSEAMYGQLL--AKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKN 470 G VK+VPI +G + + G+ + A S+DF H+GS + Y + Sbjct: 145 GVEVKIVPITLGIQDEEVSRSLGRSIFEASTSLGRDTIIIASTDFMHYGSFYGYVPFRGR 204 Query: 469 HGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICG 350 + + D + I D D ++E +T+CG Sbjct: 205 PEELPNMVRDWDMRIIRRILDFDLDGMFSEIREMNHTMCG 244
>Y1638_PYRFU (Q8U0F2) UPF0103 protein PF1638| Length = 292 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Frame = -1 Query: 643 GHNVKVVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSV--SSDFCHWGSRFSYTYYDKN 470 G +VK+VPI +G + + G+ + + + V S+DF H+G + Y + Sbjct: 145 GKDVKIVPITLGIQDEEVSYALGKAIYEASQELGRDIVVIASTDFMHYGEFYGYVPFRAR 204 Query: 469 HGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISV 332 + ++ D + I D + + + +T+CG + V Sbjct: 205 ADELPNLVKEWDMRVIRRILDFDVEGMFEEINAMNHTMCGPGGVGV 250
>PERT_RAT (P14650) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 914 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -1 Query: 511 HWGSRFSYTYYDKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYE 365 HW + +Y K GA+H+ I D + + PDAF+QY+ YE Sbjct: 415 HWSANTAYQEARKVVGALHQIITMRDYIPKIL----GPDAFRQYVGPYE 459
>PERT_MOUSE (P35419) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 914 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -1 Query: 511 HWGSRFSYTYYDKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYE 365 HW + +Y K GA+H+ I D + + PDAF+QY+ YE Sbjct: 415 HWSANTAYQEARKVVGALHQIITMRDYIPKIL----GPDAFRQYVGPYE 459
>Y539_PYRAB (Q9V189) UPF0103 protein PYRAB05390| Length = 291 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Frame = -1 Query: 643 GHNVKVVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSV--SSDFCHWGSRFSYTYYDKN 470 G + ++VPI +G + G+ + + + V S+DF H+GS + Y + Sbjct: 145 GTDFRIVPITLGIQDEDVSEALGRAVFEAAEALGRDVIVIASTDFMHYGSFYGYVPFRGR 204 Query: 469 HGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICG 350 + ++ D + I D + ++E ++T+CG Sbjct: 205 ANELPNMVKEWDMRIIRRILDFDLKGMFEEIREMDHTMCG 244
>Y1771_AERPE (Q9YB24) UPF0103 protein APE1771| Length = 281 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = -1 Query: 478 DKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPIS 335 D NH ++ + D + ++ IE GDP+A + ++ + + CG PI+ Sbjct: 195 DLNHYEPYEENKRKDLLLLKAIEEGDPEAVFKTIEAHAISACGPSPIA 242
>HDA6_CAEEL (Q20296) Histone deactylase 6| Length = 955 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 391 FKQYLQEYENTICGRHP-ISVLLHMLKHCLTKIKV 290 F Q E+ENT+C HP S + +K LTK K+ Sbjct: 19 FNQTQNEHENTVCPTHPESSDRILKIKEALTKTKI 53
>ACS2_CANGA (Q6FXI2) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA| ligase 2) (Acyl-activating enzyme 2) Length = 683 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -1 Query: 640 HNVKVVPILVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSS-DFCHWGSRFSYTYY 479 H K P G + SE Y +L + ++DP+ FFS + + HW + FS Y Sbjct: 23 HFYKSQPSRGGFIKDISE--YERLYKQSIEDPETFFSEKARELLHWDAPFSKVSY 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,657,341 Number of Sequences: 219361 Number of extensions: 1901739 Number of successful extensions: 4985 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4976 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
