ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475657.1| Oryza sativa (japonica cultivar-group), predic... 98 4e-17
2gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
4ref|NM_184511.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
7ref|NM_184654.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genom... 72 2e-09
11ref|XM_474003.1| Oryza sativa (japonica cultivar-group), predic... 64 5e-07
12emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4,... 64 5e-07
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
14dbj|AK108022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
15emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 64 5e-07
16emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 64 5e-07
17emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4,... 64 5e-07
18gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
21gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
22dbj|AK109305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
23ref|NM_190413.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
24dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
25dbj|AK111090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
26gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.47
27gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
28gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01,... 42 1.9
29dbj|AB071216.2| Oncorhynchus masou GHR mRNA for growth hormone r... 42 1.9
30dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.9
31gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
32gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.4
33dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.4
34gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosom... 40 7.4
35emb|AL929602.3|CNS08CCH Human chromosome 14 DNA sequence BAC C-2... 40 7.4
36gb|AC128656.9| Homo sapiens 3 BAC RP13-651H24 (Roswell Park Canc... 40 7.4
37gb|AC128653.5| Homo sapiens 3 BAC RP11-154P7 (Roswell Park Cance... 40 7.4
38dbj|AK108155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
39gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.4
40gb|AC113245.12| Mus musculus chromosome 7, clone RP23-175D5, com... 40 7.4 
>ref|XM_475657.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 513

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                       
Query: 398 ccggcaccgaggacgccgggatgaggaagtatatctggccgcgctccagctcggactccg 457
           ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 277 ccggcacggaggaggccgggatgaggaagtagatctcgccgcgctccagctcggagtccg 218

                        
Query: 458 gggagacgatgag 470
           | |||||||||||
Sbjct: 217 gcgagacgatgag 205



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 153 tcaagtgccctccacgatgcactcgaggtgtggcctccacacgacggtccggccgccggt 212
           ||||||| |||| ||||||||||||||||||||||||||| |  | ||||||| ||||| 
Sbjct: 513 tcaagtgtcctctacgatgcactcgaggtgtggcctccacgccgccgtccggctgccggc 454

                                    
Query: 213 gctcactcgtcgccggtgcaacgac 237
           |||||  || |||||||||||||||
Sbjct: 453 gctcatgcgccgccggtgcaacgac 429



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 494 agcacggcttgctcagcacgtggtttgggttagcggagaggatctcgccg 543
           ||||||||||||| || |||||||| ||||| |||| |||||||||||||
Sbjct: 166 agcacggcttgctgaggacgtggttggggttggcggcgaggatctcgccg 117
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>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0027N19, complete sequence
          Length = 141368

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                         
Query: 398   ccggcaccgaggacgccgggatgaggaagtatatctggccgcgctccagctcggactccg 457
             ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 93839 ccggcacggaggaggccgggatgaggaagtagatctcgccgcgctccagctcggagtccg 93780

                          
Query: 458   gggagacgatgag 470
             | |||||||||||
Sbjct: 93779 gcgagacgatgag 93767



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                         
Query: 153   tcaagtgccctccacgatgcactcgaggtgtggcctccacacgacggtccggccgccggt 212
             ||||||| |||| ||||||||||||||||||||||||||| |  | ||||||| ||||| 
Sbjct: 94075 tcaagtgtcctctacgatgcactcgaggtgtggcctccacgccgccgtccggctgccggc 94016

                                      
Query: 213   gctcactcgtcgccggtgcaacgac 237
             |||||  || |||||||||||||||
Sbjct: 94015 gctcatgcgccgccggtgcaacgac 93991



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 8     aagggaaaaacattacatggatgtacacttacaaaaa 44
             ||||| |||||||||||||||||||||||||||||||
Sbjct: 94295 aagggtaaaacattacatggatgtacacttacaaaaa 94259



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 494   agcacggcttgctcagcacgtggtttgggttagcggagaggatctcgccg 543
             ||||||||||||| || |||||||| ||||| |||| |||||||||||||
Sbjct: 93728 agcacggcttgctgaggacgtggttggggttggcggcgaggatctcgccg 93679
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                           
Query: 398     ccggcaccgaggacgccgggatgaggaagtatatctggccgcgctccagctcggactccg 457
               ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 3772909 ccggcacggaggaggccgggatgaggaagtagatctcgccgcgctccagctcggagtccg 3772850

                            
Query: 458     gggagacgatgag 470
               | |||||||||||
Sbjct: 3772849 gcgagacgatgag 3772837



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                           
Query: 153     tcaagtgccctccacgatgcactcgaggtgtggcctccacacgacggtccggccgccggt 212
               ||||||| |||| ||||||||||||||||||||||||||| |  | ||||||| ||||| 
Sbjct: 3773145 tcaagtgtcctctacgatgcactcgaggtgtggcctccacgccgccgtccggctgccggc 3773086

                                        
Query: 213     gctcactcgtcgccggtgcaacgac 237
               |||||  || |||||||||||||||
Sbjct: 3773085 gctcatgcgccgccggtgcaacgac 3773061



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                    
Query: 8       aagggaaaaacattacatggatgtacacttacaaaaa 44
               ||||| |||||||||||||||||||||||||||||||
Sbjct: 3773365 aagggtaaaacattacatggatgtacacttacaaaaa 3773329



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                 
Query: 494     agcacggcttgctcagcacgtggtttgggttagcggagaggatctcgccg 543
               ||||||||||||| || |||||||| ||||| |||| |||||||||||||
Sbjct: 3772798 agcacggcttgctgaggacgtggttggggttggcggcgaggatctcgccg 3772749



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 415      gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
                |||||||||||||| ||  |||||||||  |||||||| |||||||| |||||||
Sbjct: 23162678 gggatgaggaagtagatgcggccgcgcttgagctcggagtccggggacacgatga 23162624



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     cacttacaaaaagggtcacca 53
              |||||||||||||||||||||
Sbjct: 468853 cacttacaaaaagggtcacca 468833



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 322      ccagggttcgccgccgacgg 341
                ||||||||||||||||||||
Sbjct: 15458431 ccagggttcgccgccgacgg 15458412
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>ref|NM_184511.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 513

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 415 gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagtatc 474
           |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct: 251 gggatgaggaagtagatctcgccgcgctccagctccgactccggcgacacgatgagtatc 192

            
Query: 475 c 475
           |
Sbjct: 191 c 191
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 415     gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagtatc 474
               |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct: 3375843 gggatgaggaagtagatctcgccgcgctccagctccgactccggcgacacgatgagtatc 3375784

                
Query: 475     c 475
               |
Sbjct: 3375783 c 3375783



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 415      gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
                |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 35372536 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 35372590
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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0701D05
          Length = 172161

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 415   gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagtatc 474
             |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct: 54213 gggatgaggaagtagatctcgccgcgctccagctccgactccggcgacacgatgagtatc 54154

              
Query: 475   c 475
             |
Sbjct: 54153 c 54153
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>ref|NM_184654.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 438

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 412 gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
           ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 233 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 174

               
Query: 472 atcc 475
           ||||
Sbjct: 173 atcc 170
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 412      gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
                ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 18460224 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 18460165

                    
Query: 472      atcc 475
                ||||
Sbjct: 18460164 atcc 18460161
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 412      gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
                ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 18454265 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 18454206

                    
Query: 472      atcc 475
                ||||
Sbjct: 18454205 atcc 18454202
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>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete
             sequence
          Length = 90673

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 412   gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
             ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 20991 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 21050

                 
Query: 472   atcc 475
             ||||
Sbjct: 21051 atcc 21054
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>ref|XM_474003.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 480

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 412 gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
           ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 209 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 268

               
Query: 472 atcc 475
           ||||
Sbjct: 269 atcc 272
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>emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015D13,
             complete sequence
          Length = 127135

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 412   gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
             ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 13271 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 13212

                 
Query: 472   atcc 475
             ||||
Sbjct: 13211 atcc 13208
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 412      gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
                ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 32117582 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 32117523

                    
Query: 472      atcc 475
                ||||
Sbjct: 32117522 atcc 32117519
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>dbj|AK108022.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A04, full
           insert sequence
          Length = 702

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 412 gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
           ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 383 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 324

               
Query: 472 atcc 475
           ||||
Sbjct: 323 atcc 320
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>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete
             sequence
          Length = 94903

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 412   gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
             ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 89218 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 89159

                 
Query: 472   atcc 475
             ||||
Sbjct: 89158 atcc 89155
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>emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0105C05,
           complete sequence
          Length = 62215

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 412 gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
           ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 979 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 920

               
Query: 472 atcc 475
           ||||
Sbjct: 919 atcc 916
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>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06,
              complete sequence
          Length = 141752

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 412    gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
              ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 138289 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 138230

                  
Query: 472    atcc 475
              ||||
Sbjct: 138229 atcc 138226
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>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 412   gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
             ||||||||||||||||| |||| |||| |||||||||  |||||||| || |||||| ||
Sbjct: 70127 gccgggatgaggaagtagatctcgccg-gctccagcttcgactccggcgacacgatgtgt 70069

                 
Query: 472   atcc 475
             ||||
Sbjct: 70068 atcc 70065
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 412      gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
                ||||||||||||||||| |||| |||| |||||||||  |||||||| || |||||| ||
Sbjct: 18490812 gccgggatgaggaagtagatctcgccg-gctccagcttcgactccggcgacacgatgtgt 18490754

                    
Query: 472      atcc 475
                ||||
Sbjct: 18490753 atcc 18490750
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 412      gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 471
                ||||||||||||||||| |||| |||| |||||||||  |||||||| || |||||| ||
Sbjct: 18650213 gccgggatgaggaagtagatctcgccg-gctccagcttcgactccggcgacacgatgtgt 18650155

                    
Query: 472      atcc 475
                ||||
Sbjct: 18650154 atcc 18650151
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>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 415   gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
             |||||||||||||| ||  |||||||||  |||||||| |||||||| |||||||
Sbjct: 94453 gggatgaggaagtagatgcggccgcgcttgagctcggagtccggggacacgatga 94399
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>dbj|AK109305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E04, full
           insert sequence
          Length = 744

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 415 gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
           |||||||||||||| ||  |||||||||  |||||||| |||||||| |||||||
Sbjct: 378 gggatgaggaagtagatgcggccgcgcttgagctcggagtccggggacacgatga 324
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>ref|NM_190413.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 516

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 415 gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
           |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 257 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 203
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>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E11
          Length = 146083

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 415    gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
              |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 136397 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 136451
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>dbj|AK111090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G01, full
           insert sequence
          Length = 894

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 415 gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 469
           |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 350 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 296
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 483     gacgccctgcgagcacggcttgctca 508
               |||||||| |||||||||||||||||
Sbjct: 3978650 gacgcccttcgagcacggcttgctca 3978625
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>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0068N01,
              complete sequence
          Length = 152233

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     cacttacaaaaagggtcacca 53
              |||||||||||||||||||||
Sbjct: 130500 cacttacaaaaagggtcacca 130480
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>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence
          Length = 151589

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    cacttacaaaaagggtcacca 53
             |||||||||||||||||||||
Sbjct: 68651 cacttacaaaaagggtcacca 68631
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>dbj|AB071216.2| Oncorhynchus masou GHR mRNA for growth hormone receptor, complete cds
          Length = 2777

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 27   gatgtacacttacaaaaaggg 47
            |||||||||||||||||||||
Sbjct: 2638 gatgtacacttacaaaaaggg 2658
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 304     cgggtcttgccgccgtggcca 324
               |||||||||||||||||||||
Sbjct: 2288552 cgggtcttgccgccgtggcca 2288532
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>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04,
              complete sequence
          Length = 168424

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    ccagggttcgccgccgacgg 341
              ||||||||||||||||||||
Sbjct: 113452 ccagggttcgccgccgacgg 113433
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     ccggtgcaacgacctcttct 244
               ||||||||||||||||||||
Sbjct: 2641633 ccggtgcaacgacctcttct 2641614
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    gttcgccgccgacggtgtct 346
              ||||||||||||||||||||
Sbjct: 332664 gttcgccgccgacggtgtct 332645
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>gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosome 17, complete sequence
          Length = 245262

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    gccggtcttcttcttcctct 394
              ||||||||||||||||||||
Sbjct: 104712 gccggtcttcttcttcctct 104693
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>emb|AL929602.3|CNS08CCH Human chromosome 14 DNA sequence BAC C-2314B22 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137135

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    ctacgggtcttgccgccgtg 320
              ||||||||||||||||||||
Sbjct: 131377 ctacgggtcttgccgccgtg 131396
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>gb|AC128656.9| Homo sapiens 3 BAC RP13-651H24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 80993

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ctaggtagtgaactatcaag 157
             ||||||||||||||||||||
Sbjct: 38451 ctaggtagtgaactatcaag 38470
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>gb|AC128653.5| Homo sapiens 3 BAC RP11-154P7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 160788

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ctaggtagtgaactatcaag 157
            ||||||||||||||||||||
Sbjct: 5458 ctaggtagtgaactatcaag 5477
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>dbj|AK108155.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G06, full
           insert sequence
          Length = 924

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 ccagggttcgccgccgacgg 341
           ||||||||||||||||||||
Sbjct: 82  ccagggttcgccgccgacgg 101
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    gttcgccgccgacggtgtct 346
              ||||||||||||||||||||
Sbjct: 344741 gttcgccgccgacggtgtct 344722
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>gb|AC113245.12| Mus musculus chromosome 7, clone RP23-175D5, complete sequence
          Length = 213428

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tacatggatgtacacttaca 40
              ||||||||||||||||||||
Sbjct: 113496 tacatggatgtacacttaca 113515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,449,843
Number of Sequences: 3902068
Number of extensions: 4449843
Number of successful extensions: 99212
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 98494
Number of HSP's gapped (non-prelim): 721
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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