ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
2dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, ... 48 0.034
5emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BA... 48 0.034
6emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, B... 48 0.034
7gb|AC007031.2| Homo sapiens BAC clone RP11-17I10 from 7, complet... 46 0.14
8emb|Z99289.1|HS142L7 Human DNA sequence from clone RP1-142L7 on ... 44 0.53
9gb|AC133784.2| Homo sapiens BAC clone RP11-20G1 from 2, complete... 42 2.1
10gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, comp... 42 2.1
11gb|AC155820.2| Mus musculus BAC clone RP23-360J10 from chromosom... 42 2.1
12gb|AF130990.1|HSEDAR2 Homo sapiens ectodysplasin-A receptor prot... 42 2.1
13gb|AC099692.4| Mus musculus chromosome 13, clone RP23-198N22, co... 42 2.1
14gb|AY612349.1| Desmognathus quadramaculatus voucher RMB2329 NADH... 42 2.1
15gb|AY612346.1| Desmognathus marmoratus voucher KHK90 NADH dehydr... 42 2.1
16gb|AY612345.1| Desmognathus marmoratus voucher KHK366 NADH dehyd... 42 2.1
17gb|AY612344.1| Desmognathus marmoratus voucher KHK18 NADH dehydr... 42 2.1
18gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome ... 42 2.1
19gb|AC141892.4| Mus musculus BAC clone RP23-388J12 from 13, compl... 42 2.1
20gb|AC118708.4| Mus musculus chromosome 7, clone RP24-118K11, com... 40 8.3
21gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, comp... 40 8.3
22gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 8.3
23gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, com... 40 8.3
24ref|XM_842619.1| Leishmania major strain Friedlin hypothetical p... 40 8.3
25gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosom... 40 8.3
26gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001... 40 8.3
27gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B0702... 40 8.3
28gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B5701... 40 8.3
29gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B1501... 40 8.3
30gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B1402... 40 8.3
31gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B0801... 40 8.3
32gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B1402... 40 8.3
33gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B0801... 40 8.3
34emb|BX322539.9| Human DNA sequence from clone DAQB-115I13 on chr... 40 8.3
35emb|BX284671.5| Human DNA sequence from clone CTD-2298C19 on chr... 40 8.3
36emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on c... 40 8.3
37emb|AL662833.4| Human DNA sequence from clone XXbac-101P6 on chr... 40 8.3
38emb|AL355652.1|SPAC30C2 S.pombe chromosome I cosmid c30C2 40 8.3
39emb|CR388229.14| Human DNA sequence from clone DADB-104B20 on ch... 40 8.3
40emb|CR933862.6| Human DNA sequence from clone DAMC-118J7 on chro... 40 8.3
41emb|AL672021.11| Mouse DNA sequence from clone RP23-463M4 on chr... 40 8.3
42emb|BX679667.8| Mouse DNA sequence from clone RP24-424A15 on chr... 40 8.3
43emb|BX664732.7| Mouse DNA sequence from clone RP23-452F17 on chr... 40 8.3
44emb|CR847781.3| Human DNA sequence from clone DAMA-198I19 on chr... 40 8.3
45emb|AL954667.9| Zebrafish DNA sequence from clone CH211-214K3 in... 40 8.3
46emb|CR387995.6| Mouse DNA sequence from clone RP23-18L17 on chro... 40 8.3
47gb|AC117513.4| Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cance... 40 8.3
48gb|AC108749.11| Homo sapiens 3 BAC RP11-288B15 (Roswell Park Can... 40 8.3
49gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, co... 40 8.3
50gb|AC100783.2| Homo sapiens chromosome 18, clone RP11-141I4, com... 40 8.3
51gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, comp... 40 8.3
52gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, compl... 40 8.3
53ref|NM_001020088.1| Schizosaccharomyces pombe 972h- hypothetical... 40 8.3
54gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, co... 40 8.3
55gb|AF058914.1|F21E10 Arabidopsis thaliana BAC F21E10, complete s... 40 8.3
56emb|BX649624.8| Mouse DNA sequence from clone RP23-263M8 on chro... 40 8.3
57emb|BX890554.6| Mouse DNA sequence from clone RP23-291C10 on chr... 40 8.3
58gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, co... 40 8.3
59ref|XM_216386.3| PREDICTED: Rattus norvegicus catenin alpha-like... 40 8.3
60dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 8.3
61emb|BX682540.5| Mouse DNA sequence from clone RP23-383O14 on chr... 40 8.3
62emb|BX001010.13| Mouse DNA sequence from clone RP23-18D18 on chr... 40 8.3
63emb|AL772200.10| Mouse DNA sequence from clone RP23-265N8 on chr... 40 8.3
64gb|AC119196.12| Mus musculus chromosome 7, clone RP24-179I13, co... 40 8.3
65emb|CT573011.11| Mouse DNA sequence from clone RP23-330P11 on ch... 40 8.3
66gb|AF094759.1|AF094759 Schistosoma mansoni retinoic acid recepto... 40 8.3
67gb|AC006048.1|AC006048 Homo sapiens clone UWGC:y3c062 from 6p21,... 40 8.3
68dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.3
69ref|NM_001017050.2| Xenopus tropicalis hypothetical protein LOC5... 40 8.3
70gb|BC075609.1| Xenopus tropicalis hypothetical protein LOC549804... 40 8.3
71dbj|D84394.1| Homo sapiens genomic DNA, 237 kb segment from 6p21... 40 8.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 464      ctggtattcctattccagtgtcataaacatcgaagcgaagccaaacaacttc 515
                ||||||||||||||||||| ||||| |||||  |||||||||||||||||||
Sbjct: 26427432 ctggtattcctattccagtatcatatacatcacagcgaagccaaacaacttc 26427381



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 300      aaatgttgacccttcattctctttgctaagcactgtgagagtaccacccatcaagtccac 359
                ||||||||| ||||||||||||||||| | ||| || ||||| ||||||||||| |||||
Sbjct: 26427869 aaatgttgatccttcattctctttgctgaccacagttagagtgccacccatcaactccac 26427810

                 
Query: 360      c 360
                |
Sbjct: 26427809 c 26427809



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                            
Query: 358      accaactgcttgcagaaagcaaggccaagccccatcccaccatattttgttgtatgtttc 417
                |||| ||||||||| |  ||||||||||||||  | || ||||||||| ||| ||| |  
Sbjct: 26427653 accagctgcttgcatatcgcaaggccaagccctgttccgccatattttcttgcatgatca 26427594

                                                     
Query: 418      tcattggcatgcatatacctcttgaacagaaacggca 454
                ||| | || ||||||||||||||||| || |||||||
Sbjct: 26427593 tcacttgcttgcatatacctcttgaatagcaacggca 26427557



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                            
Query: 529      tcatttgatggaatgccattctgatgagcttcttcatggtttgagcaacgcaaggtatct 588
                |||||||||||||||||| |||||  ||| |||||||| || ||||| | ||| ||||| 
Sbjct: 26427352 tcatttgatggaatgccagtctgacaagcatcttcatgattggagcagcccaaagtatca 26427293

                    
Query: 589      ttat 592
                ||||
Sbjct: 26427292 ttat 26427289
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>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0709F06
          Length = 170964

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 464   ctggtattcctattccagtgtcataaacatcgaagcgaagccaaacaacttc 515
             ||||||||||||||||||| ||||| |||||  |||||||||||||||||||
Sbjct: 39471 ctggtattcctattccagtatcatatacatcacagcgaagccaaacaacttc 39420



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 300   aaatgttgacccttcattctctttgctaagcactgtgagagtaccacccatcaagtccac 359
             ||||||||| ||||||||||||||||| | ||| || ||||| ||||||||||| |||||
Sbjct: 39908 aaatgttgatccttcattctctttgctgaccacagttagagtgccacccatcaactccac 39849

              
Query: 360   c 360
             |
Sbjct: 39848 c 39848



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                         
Query: 358   accaactgcttgcagaaagcaaggccaagccccatcccaccatattttgttgtatgtttc 417
             |||| ||||||||| |  ||||||||||||||  | || ||||||||| ||| ||| |  
Sbjct: 39692 accagctgcttgcatatcgcaaggccaagccctgttccgccatattttcttgcatgatca 39633

                                                  
Query: 418   tcattggcatgcatatacctcttgaacagaaacggca 454
             ||| | || ||||||||||||||||| || |||||||
Sbjct: 39632 tcacttgcttgcatatacctcttgaatagcaacggca 39596



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 529   tcatttgatggaatgccattctgatgagcttcttcatggtttgagcaacgcaaggtatct 588
             |||||||||||||||||| |||||  ||| |||||||| || ||||| | ||| ||||| 
Sbjct: 39391 tcatttgatggaatgccagtctgacaagcatcttcatgattggagcagcccaaagtatca 39332

                 
Query: 589   ttat 592
             ||||
Sbjct: 39331 ttat 39328
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>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0085J13
          Length = 130185

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 464    ctggtattcctattccagtgtcataaacatcgaagcgaagccaaacaacttc 515
              ||||||||||||||||||| ||||| |||||  |||||||||||||||||||
Sbjct: 125159 ctggtattcctattccagtatcatatacatcacagcgaagccaaacaacttc 125108



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                          
Query: 300    aaatgttgacccttcattctctttgctaagcactgtgagagtaccacccatcaagtccac 359
              ||||||||| ||||||||||||||||| | ||| || ||||| ||||||||||| |||||
Sbjct: 125596 aaatgttgatccttcattctctttgctgaccacagttagagtgccacccatcaactccac 125537

               
Query: 360    c 360
              |
Sbjct: 125536 c 125536



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                          
Query: 358    accaactgcttgcagaaagcaaggccaagccccatcccaccatattttgttgtatgtttc 417
              |||| ||||||||| |  ||||||||||||||  | || ||||||||| ||| ||| |  
Sbjct: 125380 accagctgcttgcatatcgcaaggccaagccctgttccgccatattttcttgcatgatca 125321

                                                   
Query: 418    tcattggcatgcatatacctcttgaacagaaacggca 454
              ||| | || ||||||||||||||||| || |||||||
Sbjct: 125320 tcacttgcttgcatatacctcttgaatagcaacggca 125284



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                          
Query: 529    tcatttgatggaatgccattctgatgagcttcttcatggtttgagcaacgcaaggtatct 588
              |||||||||||||||||| |||||  ||| |||||||| || ||||| | ||| ||||| 
Sbjct: 125079 tcatttgatggaatgccagtctgacaagcatcttcatgattggagcagcccaaagtatca 125020

                  
Query: 589    ttat 592
              ||||
Sbjct: 125019 ttat 125016
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>emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73
          Length = 194862

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 426    atgcatatacctcttgaacagaaa 449
              ||||||||||||||||||||||||
Sbjct: 161332 atgcatatacctcttgaacagaaa 161355
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>emb|AL022198.1|ATF6I18 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project)
          Length = 122322

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 426    atgcatatacctcttgaacagaaa 449
              ||||||||||||||||||||||||
Sbjct: 106501 atgcatatacctcttgaacagaaa 106478
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>emb|AL109787.1|ATT10C21 Arabidopsis thaliana DNA chromosome 4, BAC clone T10C21
          Length = 77860

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 426   atgcatatacctcttgaacagaaa 449
             ||||||||||||||||||||||||
Sbjct: 60217 atgcatatacctcttgaacagaaa 60240
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>gb|AC007031.2| Homo sapiens BAC clone RP11-17I10 from 7, complete sequence
          Length = 47042

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 87    ctaacagaacagtaaggaaactg 109
             |||||||||||||||||||||||
Sbjct: 16295 ctaacagaacagtaaggaaactg 16273
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>emb|Z99289.1|HS142L7 Human DNA sequence from clone RP1-142L7 on chromosome 6q21 Contains the
              3' end of the WISP3 gene for WNT1 inducible signaling
              pathway protein 3, the gene for epsilon tubulin, two novel
              genes, the 3' end of the LAMA4 gene for laminin alpha 4,
              the 5' end of a novel gene and a CpG island, complete
              sequence
          Length = 190778

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 357    caccaactgcttgcagaaagcaaggc 382
              |||||||||||| |||||||||||||
Sbjct: 175244 caccaactgcttacagaaagcaaggc 175269
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>gb|AC133784.2| Homo sapiens BAC clone RP11-20G1 from 2, complete sequence
          Length = 67535

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   ggccaagccccatcccaccat 400
             |||||||||||||||||||||
Sbjct: 33930 ggccaagccccatcccaccat 33950
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>gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, complete sequence
          Length = 189706

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 398   catattttgttgtatgtttct 418
             |||||||||||||||||||||
Sbjct: 20256 catattttgttgtatgtttct 20236
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>gb|AC155820.2| Mus musculus BAC clone RP23-360J10 from chromosome 10, complete
             sequence
          Length = 221801

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   aaactgtaaaccacattcttt 124
             |||||||||||||||||||||
Sbjct: 55472 aaactgtaaaccacattcttt 55492
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>gb|AF130990.1|HSEDAR2 Homo sapiens ectodysplasin-A receptor protein (EDAR) gene, exons 2,
           3, and 4
          Length = 2475

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 380 ggccaagccccatcccaccat 400
           |||||||||||||||||||||
Sbjct: 864 ggccaagccccatcccaccat 844
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>gb|AC099692.4| Mus musculus chromosome 13, clone RP23-198N22, complete sequence
          Length = 216362

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 578  gcaaggtatctttatgagaaa 598
            |||||||||||||||||||||
Sbjct: 3090 gcaaggtatctttatgagaaa 3110
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>gb|AY612349.1| Desmognathus quadramaculatus voucher RMB2329 NADH dehydrogenase
            subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala,
            tRNA-Asx, tRNA-Cys, and tRNA-Tyr genes, complete
            sequence; and cytochrome oxidase subunit I (COI) gene,
            partial cds; mitochondrial
          Length = 1577

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   tgaagctacaactcaacacct 77
            |||||||||||||||||||||
Sbjct: 1375 tgaagctacaactcaacacct 1395
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>gb|AY612346.1| Desmognathus marmoratus voucher KHK90 NADH dehydrogenase subunit 2
            (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asx,
            tRNA-Cys, and tRNA-Tyr genes, complete sequence; and
            cytochrome oxidase subunit I (COI) gene, partial cds;
            mitochondrial
          Length = 1577

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   tgaagctacaactcaacacct 77
            |||||||||||||||||||||
Sbjct: 1375 tgaagctacaactcaacacct 1395
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>gb|AY612345.1| Desmognathus marmoratus voucher KHK366 NADH dehydrogenase subunit 2
            (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asx,
            tRNA-Cys, and tRNA-Tyr genes, complete sequence; and
            cytochrome oxidase subunit I (COI) gene, partial cds;
            mitochondrial
          Length = 1577

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   tgaagctacaactcaacacct 77
            |||||||||||||||||||||
Sbjct: 1375 tgaagctacaactcaacacct 1395
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>gb|AY612344.1| Desmognathus marmoratus voucher KHK18 NADH dehydrogenase subunit 2
            (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asx,
            tRNA-Cys, and tRNA-Tyr genes, complete sequence; and
            cytochrome oxidase subunit I (COI) gene, partial cds;
            mitochondrial
          Length = 1577

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   tgaagctacaactcaacacct 77
            |||||||||||||||||||||
Sbjct: 1375 tgaagctacaactcaacacct 1395
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>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence
          Length = 262262

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    aaactgtaaaccacattcttt 124
              |||||||||||||||||||||
Sbjct: 261619 aaactgtaaaccacattcttt 261639
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>gb|AC141892.4| Mus musculus BAC clone RP23-388J12 from 13, complete sequence
          Length = 219862

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 578    gcaaggtatctttatgagaaa 598
              |||||||||||||||||||||
Sbjct: 166863 gcaaggtatctttatgagaaa 166883
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>gb|AC118708.4| Mus musculus chromosome 7, clone RP24-118K11, complete sequence
          Length = 212638

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    tttgcccttctccaggagct 179
              ||||||||||||||||||||
Sbjct: 177979 tttgcccttctccaggagct 177960
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>gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, complete sequence
          Length = 231140

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    tctggtattcctattccagt 482
              ||||||||||||||||||||
Sbjct: 225684 tctggtattcctattccagt 225703
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    accatctttgcccttctccaggag 177
              |||||||||||||||||| |||||
Sbjct: 200264 accatctttgcccttctcaaggag 200287
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>gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, complete sequence
          Length = 234816

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    tctggtattcctattccagt 482
              ||||||||||||||||||||
Sbjct: 216980 tctggtattcctattccagt 216961
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>ref|XM_842619.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0689)
           partial mRNA
          Length = 1509

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 154 accatctttgcccttctccaggag 177
           |||||||||||||||||| |||||
Sbjct: 570 accatctttgcccttctcaaggag 547
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>gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosome 18, complete sequence
          Length = 147109

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    cagccctggaccatctttgc 164
              ||||||||||||||||||||
Sbjct: 110176 cagccctggaccatctttgc 110157
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>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic
              sequence
          Length = 346809

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 131578 aattttttgtatgtattttc 131559
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>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103
              genomic sequence
          Length = 341361

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 130325 aattttttgtatgtattttc 130306
to top
>gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic
              sequence
          Length = 265420

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 134738 aattttttgtatgtattttc 134719
to top
>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401
              genomic sequence
          Length = 351341

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 146389 aattttttgtatgtattttc 146370
to top
>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 146291 aattttttgtatgtattttc 146272
to top
>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 338544

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 142523 aattttttgtatgtattttc 142504
to top
>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 336776

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 125395 aattttttgtatgtattttc 125376
to top
>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 342745

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 123132 aattttttgtatgtattttc 123113
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>emb|BX322539.9| Human DNA sequence from clone DAQB-115I13 on chromosome 6 Contains the
             3' end of the HCG27 gene for HLA complex group 27, the
             HLA-C gene for major histocompatibility complex, class I,
             C, and 1 CpG island, complete sequence
          Length = 69495

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aattttttgtatgtattttc 20
             ||||||||||||||||||||
Sbjct: 41657 aattttttgtatgtattttc 41676
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>emb|BX284671.5| Human DNA sequence from clone CTD-2298C19 on chromosome 1, complete
             sequence
          Length = 74045

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   cttgcagaaagcaaggccaa 385
             ||||||||||||||||||||
Sbjct: 14627 cttgcagaaagcaaggccaa 14608
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>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains the
              gene for STG protein, the CDSN gene for corneodesmosin, the
              gene for SEEK1 protein, the gene for SPR1 protein, the gene
              for HCR, the TCF19 gene for transcription factor 19, the
              POU5F1 gene for POU domain, class 5, transcription factor
              1, a putative novel transcript and four CpG islands,
              complete sequence
          Length = 204298

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 185453 aattttttgtatgtattttc 185472
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>emb|AL662833.4| Human DNA sequence from clone XXbac-101P6 on chromosome 6 contains the
              gene for HCR, the TCF19 gene for  transcription factor 19,
              the POU5F1 gene for POU domain, class 5, transcription
              factor 1, a putative novel transcript, the HLA-C gene for
              major histocompatibility complex, class I, C, a ubiquitin
              specific protease 8 (USP8) pseudogene, a ribosomal protein
              L3 (RPL3) pseudogene, a WAS protein family, member 3
              (WASF3) pseudogene and  three CpG islands, complete
              sequence
          Length = 168887

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 105613 aattttttgtatgtattttc 105632
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>emb|AL355652.1|SPAC30C2 S.pombe chromosome I cosmid c30C2
          Length = 20130

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 552   atgagcttcttcatggtttg 571
             ||||||||||||||||||||
Sbjct: 14824 atgagcttcttcatggtttg 14843
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>emb|CR388229.14| Human DNA sequence from clone DADB-104B20 on chromosome 6, complete
             sequence
          Length = 121659

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aattttttgtatgtattttc 20
             ||||||||||||||||||||
Sbjct: 86238 aattttttgtatgtattttc 86257
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>emb|CR933862.6| Human DNA sequence from clone DAMC-118J7 on chromosome 6, complete
             sequence
          Length = 27769

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aattttttgtatgtattttc 20
             ||||||||||||||||||||
Sbjct: 10410 aattttttgtatgtattttc 10429
to top
>emb|AL672021.11| Mouse DNA sequence from clone RP23-463M4 on chromosome X, complete
              sequence
          Length = 195259

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      tttgtatgtattttctaatt 25
              ||||||||||||||||||||
Sbjct: 156379 tttgtatgtattttctaatt 156398
to top
>emb|BX679667.8| Mouse DNA sequence from clone RP24-424A15 on chromosome X, complete
             sequence
          Length = 79203

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 44735 tttgtatgtattttctaatt 44754
to top
>emb|BX664732.7| Mouse DNA sequence from clone RP23-452F17 on chromosome X, complete
             sequence
          Length = 87723

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 61868 tttgtatgtattttctaatt 61887
to top
>emb|CR847781.3| Human DNA sequence from clone DAMA-198I19 on chromosome 6, complete
             sequence
          Length = 36428

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aattttttgtatgtattttc 20
             ||||||||||||||||||||
Sbjct: 19667 aattttttgtatgtattttc 19686
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>emb|AL954667.9| Zebrafish DNA sequence from clone CH211-214K3 in linkage group 25,
              complete sequence
          Length = 202657

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    ccttcattctctttgctaag 329
              ||||||||||||||||||||
Sbjct: 136619 ccttcattctctttgctaag 136638
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>emb|CR387995.6| Mouse DNA sequence from clone RP23-18L17 on chromosome X, complete
              sequence
          Length = 224892

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tttgtatgtattttctaatt 25
              ||||||||||||||||||||
Sbjct: 173719 tttgtatgtattttctaatt 173700



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    tttgtatgtattttctaatt 25
            ||||||||||||||||||||
Sbjct: 6851 tttgtatgtattttctaatt 6832
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>gb|AC117513.4| Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166960

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   cctggaccatctttgccctt 168
             ||||||||||||||||||||
Sbjct: 82504 cctggaccatctttgccctt 82485
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>gb|AC108749.11| Homo sapiens 3 BAC RP11-288B15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170796

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   cctggaccatctttgccctt 168
             ||||||||||||||||||||
Sbjct: 17236 cctggaccatctttgccctt 17255
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>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence
          Length = 149148

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 1      aattttttgtatgtattttctaattctt 28
              |||||| ||||||| |||||||||||||
Sbjct: 109191 aattttatgtatgttttttctaattctt 109218
to top
>gb|AC100783.2| Homo sapiens chromosome 18, clone RP11-141I4, complete sequence
          Length = 149913

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tttgtatgtattttctaatt 25
              ||||||||||||||||||||
Sbjct: 100172 tttgtatgtattttctaatt 100153
to top
>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence
          Length = 180765

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 1      aattttttgtatgtattttctaattctt 28
              |||||| ||||||| |||||||||||||
Sbjct: 169608 aattttatgtatgttttttctaattctt 169635
to top
>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      ttttttgtatgtattttctaattc 26
              ||||||||||||||||| ||||||
Sbjct: 104385 ttttttgtatgtattttataattc 104362
to top
>ref|NM_001020088.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC30C2.07),
           partial mRNA
          Length = 2529

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 atgagcttcttcatggtttg 571
           ||||||||||||||||||||
Sbjct: 65  atgagcttcttcatggtttg 84
to top
>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence
          Length = 207351

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   cagccctggaccatctttgc 164
             ||||||||||||||||||||
Sbjct: 98153 cagccctggaccatctttgc 98134
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>gb|AF058914.1|F21E10 Arabidopsis thaliana BAC F21E10, complete sequence
          Length = 111767

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     aattttttgtatgtattttctaat 24
             |||||||||| |||||||||||||
Sbjct: 10139 aattttttgtttgtattttctaat 10162
to top
>emb|BX649624.8| Mouse DNA sequence from clone RP23-263M8 on chromosome X, complete
              sequence
          Length = 167883

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      tttgtatgtattttctaatt 25
              ||||||||||||||||||||
Sbjct: 158372 tttgtatgtattttctaatt 158391
to top
>emb|BX890554.6| Mouse DNA sequence from clone RP23-291C10 on chromosome X, complete
             sequence
          Length = 169236

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 62023 tttgtatgtattttctaatt 62042
to top
>gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, complete sequence
          Length = 164628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    cagccctggaccatctttgc 164
              ||||||||||||||||||||
Sbjct: 115715 cagccctggaccatctttgc 115696
to top
>ref|XM_216386.3| PREDICTED: Rattus norvegicus catenin alpha-like 1 (predicted)
           (Catnal1_predicted), mRNA
          Length = 2290

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 tgtgaggagcatcattgtgc 263
           ||||||||||||||||||||
Sbjct: 717 tgtgaggagcatcattgtgc 698
to top
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 697644 aattttttgtatgtattttc 697625
to top
>emb|BX682540.5| Mouse DNA sequence from clone RP23-383O14 on chromosome X, complete
             sequence
          Length = 191028

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 46915 tttgtatgtattttctaatt 46934
to top
>emb|BX001010.13| Mouse DNA sequence from clone RP23-18D18 on chromosome X, complete
             sequence
          Length = 227248

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 51876 tttgtatgtattttctaatt 51895
to top
>emb|AL772200.10| Mouse DNA sequence from clone RP23-265N8 on chromosome X, complete
             sequence
          Length = 195289

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 84249 tttgtatgtattttctaatt 84268
to top
>gb|AC119196.12| Mus musculus chromosome 7, clone RP24-179I13, complete sequence
          Length = 165611

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tttgcccttctccaggagct 179
              ||||||||||||||||||||
Sbjct: 162631 tttgcccttctccaggagct 162650
to top
>emb|CT573011.11| Mouse DNA sequence from clone RP23-330P11 on chromosome X, complete
             sequence
          Length = 104602

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttgtatgtattttctaatt 25
             ||||||||||||||||||||
Sbjct: 37876 tttgtatgtattttctaatt 37895
to top
>gb|AF094759.1|AF094759 Schistosoma mansoni retinoic acid receptor RXR mRNA, complete cds
          Length = 2853

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 311  cttcattctctttgctaagcactg 334
            |||||||| |||||||||||||||
Sbjct: 1156 cttcattccctttgctaagcactg 1133
to top
>gb|AC006048.1|AC006048 Homo sapiens clone UWGC:y3c062 from 6p21, complete sequence
          Length = 43744

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aattttttgtatgtattttc 20
             ||||||||||||||||||||
Sbjct: 12919 aattttttgtatgtattttc 12900
to top
>dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874J12, complete
             sequence
          Length = 226147

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   ggtatctttatgagaaattt 601
             ||||||||||||||||||||
Sbjct: 83825 ggtatctttatgagaaattt 83844
to top
>ref|NM_001017050.2| Xenopus tropicalis hypothetical protein LOC549804 (LOC549804), mRNA
          Length = 1118

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 gcatatacctcttgaacaga 447
           ||||||||||||||||||||
Sbjct: 653 gcatatacctcttgaacaga 672
to top
>gb|BC075609.1| Xenopus tropicalis hypothetical protein LOC549804, mRNA (cDNA clone
           IMAGE:7000370)
          Length = 1118

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 428 gcatatacctcttgaacaga 447
           ||||||||||||||||||||
Sbjct: 653 gcatatacctcttgaacaga 672
to top
>dbj|D84394.1| Homo sapiens genomic DNA, 237 kb segment from 6p21.3 region including HLA
              genes, complete sequence
          Length = 236822

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattttttgtatgtattttc 20
              ||||||||||||||||||||
Sbjct: 168814 aattttttgtatgtattttc 168795


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,568,274
Number of Sequences: 3902068
Number of extensions: 6568274
Number of successful extensions: 127250
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127035
Number of HSP's gapped (non-prelim): 215
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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