ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 232 1e-57
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 232 1e-57
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 232 1e-57
4gb|AY108493.1| Zea mays PCO117005 mRNA sequence 218 2e-53
5ref|XM_475894.1| Oryza sativa (japonica cultivar-group), predic... 96 2e-16
6gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 96 2e-16
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
8dbj|AK059663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
9gb|BT013109.1| Lycopersicon esculentum clone 114395R, mRNA sequence 64 6e-07
10gb|AC146571.13| Medicago truncatula clone mth2-104a2, complete s... 62 2e-06
11gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete seq... 62 2e-06
12emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22... 60 9e-06
13ref|NM_122097.2| Arabidopsis thaliana ATP binding / protein bind... 52 0.002
14emb|AJ851476.1| Gallus gallus mRNA for hypothetical protein, clo... 52 0.002
15gb|AY062651.1| Arabidopsis thaliana Unknown protein mRNA, comple... 52 0.002
16gb|AY054210.1| Arabidopsis thaliana AT5g20890/F22D1_60 mRNA, com... 52 0.002
17ref|NM_001012533.1| Gallus gallus chaperonin containing TCP1, su... 52 0.002
18gb|AY085104.1| Arabidopsis thaliana clone 12972 mRNA, complete s... 52 0.002
19gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 52 0.002
20gb|BT002090.1| Arabidopsis thaliana Unknown protein (At5g20890) ... 52 0.002
21gb|AY880346.1| Gekko japonicus GekBS115P mRNA, complete cds 50 0.009
22gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, co... 44 0.56
23emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chro... 44 0.56
24gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome... 42 2.2
25gb|AF098985.2| Caenorhabditis elegans cosmid C08G5, complete seq... 42 2.2
26dbj|AK036703.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 2.2
27dbj|AK035692.1| Mus musculus adult male urinary bladder cDNA, RI... 42 2.2
28dbj|AK028720.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 42 2.2
29emb|BX005424.10| Zebrafish DNA sequence from clone DKEY-3N22 in ... 42 2.2
30emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chr... 42 2.2
31gb|AC123684.8| Mus musculus chromosome 3, clone RP23-297F14, com... 40 8.8
32gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.8
33gb|AE010389.1| Methanopyrus kandleri AV19 section 88 of 157 of t... 40 8.8
34ref|NM_003143.1| Homo sapiens single-stranded DNA binding protei... 40 8.8
35gb|DP000017.1| Sus scrofa target 1 genomic scaffold 40 8.8
36gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 40 8.8
37gb|AC087423.2| Sus scrofa clone RP44-55G2, complete sequence 40 8.8
38gb|BC000895.1| Homo sapiens single-stranded DNA binding protein ... 40 8.8
39emb|Z50745.1|MKDNATHS M.kandleri DNA for ths gene 40 8.8
40emb|CR857853.1| Pongo pygmaeus mRNA; cDNA DKFZp469M1528 (from cl... 40 8.8
41dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 8.8
42gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.8
43dbj|AK052152.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 8.8
44gb|AF277319.1|AF277319 Homo sapiens single-stranded DNA-binding ... 40 8.8
45gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complet... 40 8.8
46gb|BC093054.1| Homo sapiens single-stranded DNA binding protein ... 40 8.8
47gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, co... 40 8.8
48emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on ch... 40 8.8
49gb|M94556.1|HUMMTSSB Human mitochondrial specific single strande... 40 8.8 
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
              sequence
          Length = 154558

 Score =  232 bits (117), Expect = 1e-57
 Identities = 183/205 (89%)
 Strand = Plus / Minus

                                                                          
Query: 436    tgatgacgtcgatcccaatagtgctgttctctttgtggtgctcagctcggagctgggaga 495
              ||||||| ||||| |||  |||||  ||||| ||||||||||||||||||||||| ||||
Sbjct: 134133 tgatgacatcgattccagcagtgcaattctccttgtggtgctcagctcggagctgagaga 134074

                                                                          
Query: 496    tcagctcggcactatccaggccagcattatcagctatgattgttgggatggcttgcaggg 555
              ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134073 tcagctcagcactgtccagaccagcattatcagctatgattgttgggatggcttgcaggg 134014

                                                                          
Query: 556    cacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttcat 615
              |||| || || ||||| || |||||||||||||||||||||||| ||||||| || ||||
Sbjct: 134013 cacgtgaaaaggcatcgatagcatgagatttcttcccaggggtcttccttgcgagatcat 133954

                                       
Query: 616    ccacctctttggacatcaccatctc 640
              ||||  |||||| ||||||||||||
Sbjct: 133953 ccacagctttggccatcaccatctc 133929



 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                          
Query: 280    atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
              |||||||||| |||||||||||||| ||||| || ||||||||||| || ||||| || |
Sbjct: 134369 atcacatcctatcctctctcctgcgtggggcacaagttatgatctcatcaaccctgagaa 134310

                                                                          
Query: 340    tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacgcctcgc 399
              ||||||| || |||||||| ||||| || | ||| || |||||||||||||| |||||  
Sbjct: 134309 tcatctcagccgcctcggtggcggagagaaggatggcttgcttcaccttgaaggcctccg 134250

                                       
Query: 400    agataccacgcttctgcatgtctcc 424
              | || || ||||| |||||||||||
Sbjct: 134249 atatgcctcgcttttgcatgtctcc 134225
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  232 bits (117), Expect = 1e-57
 Identities = 183/205 (89%)
 Strand = Plus / Minus

                                                                            
Query: 436      tgatgacgtcgatcccaatagtgctgttctctttgtggtgctcagctcggagctgggaga 495
                ||||||| ||||| |||  |||||  ||||| ||||||||||||||||||||||| ||||
Sbjct: 23297652 tgatgacatcgattccagcagtgcaattctccttgtggtgctcagctcggagctgagaga 23297593

                                                                            
Query: 496      tcagctcggcactatccaggccagcattatcagctatgattgttgggatggcttgcaggg 555
                ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 23297592 tcagctcagcactgtccagaccagcattatcagctatgattgttgggatggcttgcaggg 23297533

                                                                            
Query: 556      cacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttcat 615
                |||| || || ||||| || |||||||||||||||||||||||| ||||||| || ||||
Sbjct: 23297532 cacgtgaaaaggcatcgatagcatgagatttcttcccaggggtcttccttgcgagatcat 23297473

                                         
Query: 616      ccacctctttggacatcaccatctc 640
                ||||  |||||| ||||||||||||
Sbjct: 23297472 ccacagctttggccatcaccatctc 23297448



 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                            
Query: 280      atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
                |||||||||| |||||||||||||| ||||| || ||||||||||| || ||||| || |
Sbjct: 23297888 atcacatcctatcctctctcctgcgtggggcacaagttatgatctcatcaaccctgagaa 23297829

                                                                            
Query: 340      tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacgcctcgc 399
                ||||||| || |||||||| ||||| || | ||| || |||||||||||||| |||||  
Sbjct: 23297828 tcatctcagccgcctcggtggcggagagaaggatggcttgcttcaccttgaaggcctccg 23297769

                                         
Query: 400      agataccacgcttctgcatgtctcc 424
                | || || ||||| |||||||||||
Sbjct: 23297768 atatgcctcgcttttgcatgtctcc 23297744
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  232 bits (117), Expect = 1e-57
 Identities = 183/205 (89%)
 Strand = Plus / Minus

                                                                            
Query: 436      tgatgacgtcgatcccaatagtgctgttctctttgtggtgctcagctcggagctgggaga 495
                ||||||| ||||| |||  |||||  ||||| ||||||||||||||||||||||| ||||
Sbjct: 23290680 tgatgacatcgattccagcagtgcaattctccttgtggtgctcagctcggagctgagaga 23290621

                                                                            
Query: 496      tcagctcggcactatccaggccagcattatcagctatgattgttgggatggcttgcaggg 555
                ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 23290620 tcagctcagcactgtccagaccagcattatcagctatgattgttgggatggcttgcaggg 23290561

                                                                            
Query: 556      cacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttcat 615
                |||| || || ||||| || |||||||||||||||||||||||| ||||||| || ||||
Sbjct: 23290560 cacgtgaaaaggcatcgatagcatgagatttcttcccaggggtcttccttgcgagatcat 23290501

                                         
Query: 616      ccacctctttggacatcaccatctc 640
                ||||  |||||| ||||||||||||
Sbjct: 23290500 ccacagctttggccatcaccatctc 23290476



 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                            
Query: 280      atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
                |||||||||| |||||||||||||| ||||| || ||||||||||| || ||||| || |
Sbjct: 23290916 atcacatcctatcctctctcctgcgtggggcacaagttatgatctcatcaaccctgagaa 23290857

                                                                            
Query: 340      tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacgcctcgc 399
                ||||||| || |||||||| ||||| || | ||| || |||||||||||||| |||||  
Sbjct: 23290856 tcatctcagccgcctcggtggcggagagaaggatggcttgcttcaccttgaaggcctccg 23290797

                                         
Query: 400      agataccacgcttctgcatgtctcc 424
                | || || ||||| |||||||||||
Sbjct: 23290796 atatgcctcgcttttgcatgtctcc 23290772
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>gb|AY108493.1| Zea mays PCO117005 mRNA sequence
          Length = 926

 Score =  218 bits (110), Expect = 2e-53
 Identities = 164/182 (90%)
 Strand = Plus / Minus

                                                                       
Query: 461 gttctctttgtggtgctcagctcggagctgggagatcagctcggcactatccaggccagc 520
           |||||||||||||||||||||||| ||||| |||||||  || || |||||||  |||||
Sbjct: 426 gttctctttgtggtgctcagctcgtagctgagagatcaaatcagcgctatccaaaccagc 367

                                                                       
Query: 521 attatcagctatgattgttgggatggcttgcagggcacgcgagaaagcatcaatcgcatg 580
           ||| ||||||||||||||||||||||||||||| ||| | ||||||||||| || |||||
Sbjct: 366 attgtcagctatgattgttgggatggcttgcagagcatgtgagaaagcatcgatagcatg 307

                                                                       
Query: 581 agatttcttcccaggggtcctccttgcaagttcatccacctctttggacatcaccatctc 640
            |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 306 ggatttcttcccaggggtcttccttgcaagttcatccacttctttggccatcaccatctc 247

             
Query: 641 ag 642
           ||
Sbjct: 246 ag 245



 Score =  131 bits (66), Expect = 3e-27
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
           |||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 607 atcacatcctatcctctcttctgcgcggggcacaggttatgatctcatcgaccctgagga 548

                                                                 
Query: 340 tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacg 393
           |||||||||||||||| || || ||||| |  || |||||||||||||||||||
Sbjct: 547 tcatctccgcagcctctgttgcagacagaagaatggcctgcttcaccttgaacg 494
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>ref|XM_475894.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 870

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 153/188 (81%)
 Strand = Plus / Minus

                                                                       
Query: 455 agtgctgttctctttgtggtgctcagctcggagctgggagatcagctcggcactatccag 514
           |||||| | ||||||||| ||||| |||| |||||| |||||||| || || ||||||||
Sbjct: 696 agtgctctgctctttgtgatgctctgctctgagctgagagatcagatcagcgctatccag 637

                                                                       
Query: 515 gccagcattatcagctatgattgttgggatggcttgcagggcacgcgagaaagcatcaat 574
            |||||||| ||||| ||||| ||||| ||||  || || || |||||||| || || ||
Sbjct: 636 accagcattgtcagcgatgatggttggaatggactgaagagcgcgcgagaaggcttcgat 577

                                                                       
Query: 575 cgcatgagatttcttcccaggggtcctccttgcaagttcatccacctctttggacatcac 634
            ||||| || ||||||||||| ||| | || || ||| |||| || ||||||| ||| ||
Sbjct: 576 agcatgggacttcttcccaggtgtctttctcgccagtccatctacttctttggccataac 517

                   
Query: 635 catctcag 642
           ||||||||
Sbjct: 516 catctcag 509



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 281 tcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcaggat 340
           ||||||||||||||| || || || || || || || | |||||| |||||||| || ||
Sbjct: 870 tcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaat 811

                             
Query: 341 catctccgcagcctcggt 358
           ||||||||| ||||||||
Sbjct: 810 catctccgctgcctcggt 793
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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 153/188 (81%)
 Strand = Plus / Minus

                                                                         
Query: 455   agtgctgttctctttgtggtgctcagctcggagctgggagatcagctcggcactatccag 514
             |||||| | ||||||||| ||||| |||| |||||| |||||||| || || ||||||||
Sbjct: 63673 agtgctctgctctttgtgatgctctgctctgagctgagagatcagatcagcgctatccag 63614

                                                                         
Query: 515   gccagcattatcagctatgattgttgggatggcttgcagggcacgcgagaaagcatcaat 574
              |||||||| ||||| ||||| ||||| ||||  || || || |||||||| || || ||
Sbjct: 63613 accagcattgtcagcgatgatggttggaatggactgaagagcgcgcgagaaggcttcgat 63554

                                                                         
Query: 575   cgcatgagatttcttcccaggggtcctccttgcaagttcatccacctctttggacatcac 634
              ||||| || ||||||||||| ||| | || || ||| |||| || ||||||| ||| ||
Sbjct: 63553 agcatgggacttcttcccaggtgtctttctcgccagtccatctacttctttggccataac 63494

                     
Query: 635   catctcag 642
             ||||||||
Sbjct: 63493 catctcag 63486



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                         
Query: 280   atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
             |||||||||||||||| || || || || || || || | |||||| |||||||| || |
Sbjct: 63928 atcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaa 63869

                                
Query: 340   tcatctccgcagcctcggt 358
             |||||||||| ||||||||
Sbjct: 63868 tcatctccgctgcctcggt 63850
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 153/188 (81%)
 Strand = Plus / Minus

                                                                            
Query: 455      agtgctgttctctttgtggtgctcagctcggagctgggagatcagctcggcactatccag 514
                |||||| | ||||||||| ||||| |||| |||||| |||||||| || || ||||||||
Sbjct: 27467543 agtgctctgctctttgtgatgctctgctctgagctgagagatcagatcagcgctatccag 27467484

                                                                            
Query: 515      gccagcattatcagctatgattgttgggatggcttgcagggcacgcgagaaagcatcaat 574
                 |||||||| ||||| ||||| ||||| ||||  || || || |||||||| || || ||
Sbjct: 27467483 accagcattgtcagcgatgatggttggaatggactgaagagcgcgcgagaaggcttcgat 27467424

                                                                            
Query: 575      cgcatgagatttcttcccaggggtcctccttgcaagttcatccacctctttggacatcac 634
                 ||||| || ||||||||||| ||| | || || ||| |||| || ||||||| ||| ||
Sbjct: 27467423 agcatgggacttcttcccaggtgtctttctcgccagtccatctacttctttggccataac 27467364

                        
Query: 635      catctcag 642
                ||||||||
Sbjct: 27467363 catctcag 27467356



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                            
Query: 280      atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
                |||||||||||||||| || || || || || || || | |||||| |||||||| || |
Sbjct: 27467798 atcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaa 27467739

                                   
Query: 340      tcatctccgcagcctcggt 358
                |||||||||| ||||||||
Sbjct: 27467738 tcatctccgctgcctcggt 27467720
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>dbj|AK059663.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E04, full
           insert sequence
          Length = 1191

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 153/188 (81%)
 Strand = Plus / Minus

                                                                       
Query: 455 agtgctgttctctttgtggtgctcagctcggagctgggagatcagctcggcactatccag 514
           |||||| | ||||||||| ||||| |||| |||||| |||||||| || || ||||||||
Sbjct: 815 agtgctctgctctttgtgatgctctgctctgagctgagagatcagatcagcgctatccag 756

                                                                       
Query: 515 gccagcattatcagctatgattgttgggatggcttgcagggcacgcgagaaagcatcaat 574
            |||||||| ||||| ||||| ||||| ||||  || || || |||||||| || || ||
Sbjct: 755 accagcattgtcagcgatgatggttggaatggactgaagagcgcgcgagaaggcttcgat 696

                                                                       
Query: 575 cgcatgagatttcttcccaggggtcctccttgcaagttcatccacctctttggacatcac 634
            ||||| || ||||||||||| ||| | || || ||| |||| || ||||||| ||| ||
Sbjct: 695 agcatgggacttcttcccaggtgtctttctcgccagtccatctacttctttggccataac 636

                   
Query: 635 catctcag 642
           ||||||||
Sbjct: 635 catctcag 628



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 280 atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 339
           |||||||||||||||| || || || || || || || | |||||| |||||||| || |
Sbjct: 990 atcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaa 931

                              
Query: 340 tcatctccgcagcctcggt 358
           |||||||||| ||||||||
Sbjct: 930 tcatctccgctgcctcggt 912
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>gb|BT013109.1| Lycopersicon esculentum clone 114395R, mRNA sequence
          Length = 1870

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 292  cctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcaggatcatctccgcag 351
            |||| ||||| || |||||||| || ||||||||||| ||||| ||||||||||| ||||
Sbjct: 1693 cctccctcctccgtggggcgcaagtgatgatctcgtcaacccttaggatcatctcagcag 1634

                
Query: 352  cctc 355
            ||||
Sbjct: 1633 cctc 1630
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>gb|AC146571.13| Medicago truncatula clone mth2-104a2, complete sequence
          Length = 140639

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 471   tggtgctcagctcggagctgggagatcagctcggcactatccaggccagcattatcagct 530
             ||||||||||| |||||||| || |||| ||| ||||| ||||  |||||||||||||| 
Sbjct: 12635 tggtgctcagcgcggagctgagaaatcaactcagcactgtccaaaccagcattatcagca 12694

                        
Query: 531   atgattgttgg 541
             ||| |||||||
Sbjct: 12695 atggttgttgg 12705
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>gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete sequence
          Length = 120194

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                          
Query: 471    tggtgctcagctcggagctgggagatcagctcggcactatccaggccagcattatcagct 530
              ||||||||||| |||||||| || |||| ||| ||||| ||||  |||||||||||||| 
Sbjct: 101894 tggtgctcagcgcggagctgagaaatcaactcagcactgtccaaaccagcattatcagca 101953

                         
Query: 531    atgattgttgg 541
              ||| |||||||
Sbjct: 101954 atggttgttgg 101964
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>emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22 on chromosome 3,
             complete sequence
          Length = 134390

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                         
Query: 471   tggtgctcagctcggagctgggagatcagctcggcactatccaggccagcattatcagct 530
             ||||||||||| |||||||| || |||| ||| ||||| ||||  |||||||| ||||| 
Sbjct: 28267 tggtgctcagcacggagctgagaaatcaactcagcactgtccaaaccagcattgtcagca 28208

                           
Query: 531   atgattgttgggat 544
             ||| ||||||||||
Sbjct: 28207 atggttgttgggat 28194



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                         
Query: 471   tggtgctcagctcggagctgggagatcagctcggcactatccaggccagcattatcagct 530
             ||||||||| | |||||||| || |||| ||| ||||| ||||  |||||||||||||  
Sbjct: 34932 tggtgctcatcacggagctgagaaatcaactcagcactgtccaaaccagcattatcagta 34873

                          
Query: 531   atgattgttggga 543
             ||| |||||||||
Sbjct: 34872 atggttgttggga 34860
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>ref|NM_122097.2| Arabidopsis thaliana ATP binding / protein binding AT5G20890 mRNA,
            complete cds
          Length = 2126

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 555  gcacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttca 614
            ||||| |||||||| ||||| ||||||||||| || ||||  ||  |||||||||| |||
Sbjct: 1485 gcacgtgagaaagcttcaatggcatgagattttttgccagcagttttccttgcaagctca 1426

                                      
Query: 615  tccacctctttggacatcaccatctc 640
            || || || || | ||||||||||||
Sbjct: 1425 tctacttcctttgccatcaccatctc 1400
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>emb|AJ851476.1| Gallus gallus mRNA for hypothetical protein, clone 3m3
          Length = 1985

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 515  gccagcattatcagctatgattgttgggat 544
            |||||||||||||||||| |||||||||||
Sbjct: 1440 gccagcattatcagctattattgttgggat 1411
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>gb|AY062651.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1960

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 555  gcacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttca 614
            ||||| |||||||| ||||| ||||||||||| || ||||  ||  |||||||||| |||
Sbjct: 1485 gcacgtgagaaagcttcaatggcatgagattttttgccagcagttttccttgcaagctca 1426

                                      
Query: 615  tccacctctttggacatcaccatctc 640
            || || || || | ||||||||||||
Sbjct: 1425 tctacttcctttgccatcaccatctc 1400
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>gb|AY054210.1| Arabidopsis thaliana AT5g20890/F22D1_60 mRNA, complete cds
          Length = 1971

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 555  gcacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttca 614
            ||||| |||||||| ||||| ||||||||||| || ||||  ||  |||||||||| |||
Sbjct: 1480 gcacgtgagaaagcttcaatggcatgagattttttgccagcagttttccttgcaagctca 1421

                                      
Query: 615  tccacctctttggacatcaccatctc 640
            || || || || | ||||||||||||
Sbjct: 1420 tctacttcctttgccatcaccatctc 1395
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>ref|NM_001012533.1| Gallus gallus chaperonin containing TCP1, subunit 2 (beta) (CCT2),
            mRNA
          Length = 1985

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 515  gccagcattatcagctatgattgttgggat 544
            |||||||||||||||||| |||||||||||
Sbjct: 1440 gccagcattatcagctattattgttgggat 1411
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>gb|AY085104.1| Arabidopsis thaliana clone 12972 mRNA, complete sequence
          Length = 1955

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 555  gcacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttca 614
            ||||| |||||||| ||||| ||||||||||| || ||||  ||  |||||||||| |||
Sbjct: 1480 gcacgtgagaaagcttcaatggcatgagattttttgccagcagttttccttgcaagctca 1421

                                      
Query: 615  tccacctctttggacatcaccatctc 640
            || || || || | ||||||||||||
Sbjct: 1420 tctacttcctttgccatcaccatctc 1395
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>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1
          Length = 96102

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 555   gcacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttca 614
             ||||| |||||||| ||||| ||||||||||| || ||||  ||  |||||||||| |||
Sbjct: 31073 gcacgtgagaaagcttcaatggcatgagattttttgccagcagttttccttgcaagctca 31132

                                       
Query: 615   tccacctctttggacatcaccatctc 640
             || || || || | ||||||||||||
Sbjct: 31133 tctacttcctttgccatcaccatctc 31158
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>gb|BT002090.1| Arabidopsis thaliana Unknown protein (At5g20890) mRNA, complete cds
          Length = 1660

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 555  gcacgcgagaaagcatcaatcgcatgagatttcttcccaggggtcctccttgcaagttca 614
            ||||| |||||||| ||||| ||||||||||| || ||||  ||  |||||||||| |||
Sbjct: 1310 gcacgtgagaaagcttcaatggcatgagattttttgccagcagttttccttgcaagctca 1251

                                      
Query: 615  tccacctctttggacatcaccatctc 640
            || || || || | ||||||||||||
Sbjct: 1250 tctacttcctttgccatcaccatctc 1225
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>gb|AY880346.1| Gekko japonicus GekBS115P mRNA, complete cds
          Length = 1782

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 515  gccagcattatcagctatgattgttggga 543
            ||||||||||||||||||||| |||||||
Sbjct: 1419 gccagcattatcagctatgatggttggga 1391
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>gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, complete sequence
          Length = 210962

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 71     tatattttctagtggtaaataactca 96
              |||||||||||| |||||||||||||
Sbjct: 202674 tatattttctagaggtaaataactca 202649
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>emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chromosome 16, complete
             sequence
          Length = 197249

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 71    tatattttctagtggtaaataactca 96
             |||||||||||| |||||||||||||
Sbjct: 78408 tatattttctagaggtaaataactca 78383
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>gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome 9, complete sequence
          Length = 181862

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 289    tgtcctctctcctgcgcggggcgca 313
              ||||||||||||||| |||||||||
Sbjct: 100472 tgtcctctctcctgcacggggcgca 100448
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>gb|AF098985.2| Caenorhabditis elegans cosmid C08G5, complete sequence
          Length = 40550

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    cacatcactatattttctagt 83
             |||||||||||||||||||||
Sbjct: 19610 cacatcactatattttctagt 19590
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>dbj|AK036703.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830164O20 product:unclassifiable, full
           insert sequence
          Length = 4188

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 289 tgtcctctctcctgcgcggggcgca 313
           ||||||||||||||| |||||||||
Sbjct: 371 tgtcctctctcctgcacggggcgca 347
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>dbj|AK035692.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530091C08
           product:unclassifiable, full insert sequence
          Length = 2058

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 289 tgtcctctctcctgcgcggggcgca 313
           ||||||||||||||| |||||||||
Sbjct: 405 tgtcctctctcctgcacggggcgca 381
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>dbj|AK028720.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732444G10 product:unclassifiable, full
            insert sequence
          Length = 3601

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 289  tgtcctctctcctgcgcggggcgca 313
            ||||||||||||||| |||||||||
Sbjct: 1333 tgtcctctctcctgcacggggcgca 1357
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>emb|BX005424.10| Zebrafish DNA sequence from clone DKEY-3N22 in linkage group 19,
            complete sequence
          Length = 200523

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 52   gttacaacttacacatcacta 72
            |||||||||||||||||||||
Sbjct: 4757 gttacaacttacacatcacta 4737
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>emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chromosome 9, complete
            sequence
          Length = 151456

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 289  tgtcctctctcctgcgcggggcgca 313
            ||||||||||||||| |||||||||
Sbjct: 7519 tgtcctctctcctgcacggggcgca 7495
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>gb|AC123684.8| Mus musculus chromosome 3, clone RP23-297F14, complete sequence
          Length = 200566

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 582    gatttcttcccaggggtcct 601
              ||||||||||||||||||||
Sbjct: 189012 gatttcttcccaggggtcct 189031
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    ctcctgcgcggggcgcaggt 316
              ||||||||||||||||||||
Sbjct: 903962 ctcctgcgcggggcgcaggt 903981
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>gb|AE010389.1| Methanopyrus kandleri AV19 section 88 of 157 of the complete genome
          Length = 12792

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 335   caggatcatctccgcagcctcggt 358
             ||||||||||||||| ||||||||
Sbjct: 12643 caggatcatctccgcggcctcggt 12620
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>ref|NM_003143.1| Homo sapiens single-stranded DNA binding protein 1 (SSBP1), mRNA
          Length = 628

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 attatcagctatgattgttg 540
           ||||||||||||||||||||
Sbjct: 486 attatcagctatgattgttg 467
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 478    cagctcggagctgggagatcagct 501
              |||||| |||||||||||||||||
Sbjct: 503724 cagctctgagctgggagatcagct 503701
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   tcccaatagtgctgttctct 467
             ||||||||||||||||||||
Sbjct: 37639 tcccaatagtgctgttctct 37620
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>gb|AC087423.2| Sus scrofa clone RP44-55G2, complete sequence
          Length = 150305

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 478    cagctcggagctgggagatcagct 501
              |||||| |||||||||||||||||
Sbjct: 125724 cagctctgagctgggagatcagct 125701
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>gb|BC000895.1| Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA
           clone MGC:5185 IMAGE:3464282), complete cds
          Length = 1030

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 attatcagctatgattgttg 540
           ||||||||||||||||||||
Sbjct: 843 attatcagctatgattgttg 824
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>emb|Z50745.1|MKDNATHS M.kandleri DNA for ths gene
          Length = 3605

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 335  caggatcatctccgcagcctcggt 358
            ||||||||||||||| ||||||||
Sbjct: 2035 caggatcatctccgcggcctcggt 2012
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>emb|CR857853.1| Pongo pygmaeus mRNA; cDNA DKFZp469M1528 (from clone DKFZp469M1528)
          Length = 663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 attatcagctatgattgttg 540
           ||||||||||||||||||||
Sbjct: 506 attatcagctatgattgttg 487
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 522     ttatcagctatgattgttgggatg 545
               ||||| ||||||||||||||||||
Sbjct: 2007450 ttatctgctatgattgttgggatg 2007473
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 423     cccagcccgccgctgatgacgtcg 446
               ||||||||||||||| ||||||||
Sbjct: 1986972 cccagcccgccgctggtgacgtcg 1986949
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>dbj|AK052152.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330001E03 product:unclassifiable, full
           insert sequence
          Length = 4323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  aggttacaacttacacatca 69
           ||||||||||||||||||||
Sbjct: 176 aggttacaacttacacatca 157
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>gb|AF277319.1|AF277319 Homo sapiens single-stranded DNA-binding protein mRNA, complete cds
          Length = 629

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 attatcagctatgattgttg 540
           ||||||||||||||||||||
Sbjct: 487 attatcagctatgattgttg 468
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>gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complete sequence
          Length = 175554

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    catcctgtcctctctcctgc 303
              ||||||||||||||||||||
Sbjct: 115894 catcctgtcctctctcctgc 115913
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>gb|BC093054.1| Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA
           clone MGC:111135 IMAGE:30722138), complete cds
          Length = 676

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 attatcagctatgattgttg 540
           ||||||||||||||||||||
Sbjct: 503 attatcagctatgattgttg 484
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>gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, complete sequence
          Length = 177266

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 582    gatttcttcccaggggtcct 601
              ||||||||||||||||||||
Sbjct: 138632 gatttcttcccaggggtcct 138613
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>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
              sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     aggttacaacttacacatca 69
              ||||||||||||||||||||
Sbjct: 133930 aggttacaacttacacatca 133911
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>gb|M94556.1|HUMMTSSB Human mitochondrial specific single stranded DNA binding protein
           mRNA, complete cds
          Length = 628

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 attatcagctatgattgttg 540
           ||||||||||||||||||||
Sbjct: 486 attatcagctatgattgttg 467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,428,077
Number of Sequences: 3902068
Number of extensions: 4428077
Number of successful extensions: 78043
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77783
Number of HSP's gapped (non-prelim): 256
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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