ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9b24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
12AAG_ARATH (Q38951) Serine/threonine-protein phosphatase 2A 65 k... 39 0.003
22AAB_ARATH (Q38950) Serine/threonine-protein phosphatase 2A 65 k... 38 0.008
32AAA_PEA (P36875) Protein phosphatase PP2A regulatory subunit A ... 35 0.037
42AAA_ARATH (Q38845) Serine/threonine-protein phosphatase 2A 65 k... 29 2.7

>2AAG_ARATH (Q38951) Serine/threonine-protein phosphatase 2A 65 kDa regulatory|
           subunit A gamma isoform (PP2A, subunit A, gamma isoform)
           (AtA gamma)
          Length = 587

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = -2

Query: 288 DVDVRYYANQALQACDQIMMSS 223
           DVDVRY+ANQALQ+ D +MMSS
Sbjct: 566 DVDVRYFANQALQSIDNVMMSS 587



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>2AAB_ARATH (Q38950) Serine/threonine-protein phosphatase 2A 65 kDa regulatory|
           subunit A beta isoform (PP2A, subunit A, beta isoform)
           (AtA beta)
          Length = 587

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = -2

Query: 288 DVDVRYYANQALQACDQIMMSS 223
           DVDVR++ANQALQ+ D +MMSS
Sbjct: 566 DVDVRFFANQALQSIDNVMMSS 587



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>2AAA_PEA (P36875) Protein phosphatase PP2A regulatory subunit A (PR65)|
           (Fragment)
          Length = 395

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = -2

Query: 288 DVDVRYYANQALQACDQIMMSS 223
           DVDVR++A+QALQ+ DQ+ MSS
Sbjct: 374 DVDVRFFASQALQSSDQVKMSS 395



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>2AAA_ARATH (Q38845) Serine/threonine-protein phosphatase 2A 65 kDa regulatory|
           subunit A alpha isoform (PP2A, subunit A, alpha isoform)
           (PR-65 A) (AtA alpha) (Protein enhanced
           ethylene-response 1) (Protein ROOTS CURL IN
           NAPHTHYLPHTHALAMIC ACID 1)
          Length = 588

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 288 DVDVRYYANQALQACD 241
           DVDVRY+ANQAL + D
Sbjct: 566 DVDVRYFANQALNSID 581


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,936,922
Number of Sequences: 219361
Number of extensions: 527658
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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