ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009473.1| Triticum aestivum clone wr1.pk0030.b10:fis, full ... 337 1e-89
2gb|AY128687.1| Lolium perenne protein phosphatase 2A regulatory ... 101 1e-18
3ref|XM_450276.1| Oryza sativa (japonica cultivar-group), mRNA 92 1e-15
4emb|AJ243829.1|OSA243829 Oryza sativa RPA gene for protein phosp... 92 1e-15
5emb|AJ243828.1|OSA243828 Oryza sativa mRNA for protein phosphata... 92 1e-15
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
7dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
8dbj|AP005553.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
9dbj|AK069757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
10dbj|AK059103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
11gb|AY103751.1| Zea mays PCO067871 mRNA sequence 52 0.001
12gb|AY940682.1| Zea mays protein phosphatase 2A regulatory subuni... 52 0.001
13gb|BT018906.1| Zea mays clone EL01T0208F11.d mRNA sequence 44 0.24
14gb|BT016817.1| Zea mays clone Contig650 mRNA sequence 44 0.24
15gb|AF393650.1| Lactococcus lactis transcriptional repressor BusR... 42 0.97
16gb|AY111023.1| Zea mays CL9687_1 mRNA sequence 42 0.97
17gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 3.8
18emb|AL354769.17| Human DNA sequence from clone RP11-417G14 on ch... 40 3.8
19gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cance... 40 3.8
20emb|BX323842.8| Zebrafish DNA sequence from clone CH211-1M7, com... 40 3.8
21gb|AC016725.5| Homo sapiens BAC clone RP11-341H1 from 2, complet... 40 3.8
22gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete ... 40 3.8
23emb|CT573097.3| RP43-080H03, complete sequence 40 3.8
24gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 3.8 
>gb|BT009473.1| Triticum aestivum clone wr1.pk0030.b10:fis, full insert mRNA sequence
          Length = 2604

 Score =  337 bits (170), Expect = 1e-89
 Identities = 262/291 (90%), Gaps = 3/291 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaactaccaatgtatgcacaccattgaaacancgtgncccgttgctcaattatacaacat 60
            |||||| |||| || |||||||||  ||||| |||| | |||||||||||||||||||||
Sbjct: 2434 aaactatcaatttaagcacaccatcaaaacaacgtgtctcgttgctcaattatacaacat 2375

                                                                        
Query: 61   taataacaacaaanggggaacggagcccatccattntcagcatggaagnataggtcggtt 120
            ||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| | ||
Sbjct: 2374 taataacaacaaaaggggaacagagcccatccattatcagcatggaagtataggtagatt 2315

                                                                        
Query: 121  actgggctagaaagaactcttggactcataa-ggtaaattacatgtactccaaagctgga 179
            ||||||||||||| ||||||  ||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 2314 actgggctagaaataactctcagactcttaagggtaaattacatgtactcc-aagctgga 2256

                                                                        
Query: 180  ctaagaatagcttctaaagaa-cgtgacagcagcagnttanttagctagacatcatgatt 238
            ||||||||||||||||||||| ||||||  ||| || ||| |||||||||||||||||| 
Sbjct: 2255 ctaagaatagcttctaaagaaccgtgacgacagtagcttagttagctagacatcatgatc 2196

                                                               
Query: 239  tggtcacaagcctgcagggcctggtttgcatagtatcgtacatccacatca 289
            |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2195 tggtcacacgcctgaagggcctggtttgcatagtatcgtacatccacatca 2145
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>gb|AY128687.1| Lolium perenne protein phosphatase 2A regulatory A subunit mRNA,
           partial cds
          Length = 1160

 Score =  101 bits (51), Expect = 1e-18
 Identities = 120/141 (85%), Gaps = 8/141 (5%)
 Strand = Plus / Minus

                                                                       
Query: 152 ggtaaattacatgtactccaaagctggact---aagaatagcttctaaagaacgtgacag 208
           ||||||||||||||||||||||||||||||   ||||| | ||||| || | | ||||||
Sbjct: 947 ggtaaattacatgtactccaaagctggacttagaagaaaatcttctgaaca-cttgacag 889

                                                                       
Query: 209 cagcagnttanttagctagacatcatgatttggtcacaagcctgcagggcctggtttgca 268
            |||    || |||||| |||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 888 tagc----tagttagcttgacatcatgatttgatcacatgcctgaagggcctggtttgca 833

                                
Query: 269 tagtatcgtacatccacatca 289
           ||||||| ||| |||||||||
Sbjct: 832 tagtatcttacgtccacatca 812
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>ref|XM_450276.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2211

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
            |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 1966 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 1907

                      
Query: 280  atccacatca 289
            ||||||||||
Sbjct: 1906 atccacatca 1897
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>emb|AJ243829.1|OSA243829 Oryza sativa RPA gene for protein phosphatase 2A A subunit, exons
            1-12
          Length = 6096

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
            |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 5494 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 5435

                      
Query: 280  atccacatca 289
            ||||||||||
Sbjct: 5434 atccacatca 5425
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>emb|AJ243828.1|OSA243828 Oryza sativa mRNA for protein phosphatase 2A regulatory A subunit
            (RPA1 gene)
          Length = 2225

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
            |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 1930 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 1871

                      
Query: 280  atccacatca 289
            ||||||||||
Sbjct: 1870 atccacatca 1861
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                           
Query: 220     ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
               |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 3704138 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 3704197

                         
Query: 280     atccacatca 289
               ||||||||||
Sbjct: 3704198 atccacatca 3704207
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>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1695_A02
          Length = 156214

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                          
Query: 220    ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
              |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 112399 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 112458

                        
Query: 280    atccacatca 289
              ||||||||||
Sbjct: 112459 atccacatca 112468
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>dbj|AP005553.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1116_H10
          Length = 101054

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                         
Query: 220   ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
             |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 11440 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 11499

                       
Query: 280   atccacatca 289
             ||||||||||
Sbjct: 11500 atccacatca 11509
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>dbj|AK069757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031G02, full
            insert sequence
          Length = 2210

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
            |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 1965 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 1906

                      
Query: 280  atccacatca 289
            ||||||||||
Sbjct: 1905 atccacatca 1896
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>dbj|AK059103.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D03, full
            insert sequence
          Length = 1448

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagtatcgtac 279
            |||||| |||||||||||||| || || ||||| |||||||||||||||||||||| |||
Sbjct: 1286 ttagcttgacatcatgatttgatcgcatgcctgaagggcctggtttgcatagtatcttac 1227

                      
Query: 280  atccacatca 289
            ||||||||||
Sbjct: 1226 atccacatca 1217
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>gb|AY103751.1| Zea mays PCO067871 mRNA sequence
          Length = 2061

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 43   tgctcaattatacaacattaataaca 68
            ||||||||||||||||||||||||||
Sbjct: 2010 tgctcaattatacaacattaataaca 1985
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>gb|AY940682.1| Zea mays protein phosphatase 2A regulatory subunit A mRNA, complete
            cds
          Length = 2106

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagta 273
            |||||| |||| ||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 1912 ttagcttgacaccatcatctggtcgcacgcctgcagtgcctggtttgcatagta 1859
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>gb|BT018906.1| Zea mays clone EL01T0208F11.d mRNA sequence
          Length = 2095

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagta 273
            |||||| |||| ||| || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1900 ttagcttgacaccatcatctggtcgcacgcctgcagtgcctggtttgcgtagta 1847
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>gb|BT016817.1| Zea mays clone Contig650 mRNA sequence
          Length = 1853

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 220  ttagctagacatcatgatttggtcacaagcctgcagggcctggtttgcatagta 273
            |||||| |||| ||| || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1607 ttagcttgacaccatcatctggtcgcacgcctgcagtgcctggtttgcgtagta 1554
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>gb|AF393650.1| Lactococcus lactis transcriptional repressor BusR (busR) gene,
           complete cds
          Length = 849

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 173 agctggactaagaatagcttctaaa 197
           ||||||||||| |||||||||||||
Sbjct: 54  agctggactaaaaatagcttctaaa 30
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>gb|AY111023.1| Zea mays CL9687_1 mRNA sequence
          Length = 1320

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 236 atttggtcacaagcctgcagggcctggtttgcatagtatcgtacatccacatc 288
           ||||||||||| ||| | ||||| |||| ||| ||||||| |||||| |||||
Sbjct: 453 atttggtcacacgcccgaagggcttggtgtgcgtagtatcttacatctacatc 505
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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 236   atttggtcacaagcctgcagggcc 259
             |||||||||||||| |||||||||
Sbjct: 84342 atttggtcacaagcatgcagggcc 84365
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>emb|AL354769.17| Human DNA sequence from clone RP11-417G14 on chromosome X, complete
            sequence
          Length = 113526

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   acaacattaataacaacaaa 73
            ||||||||||||||||||||
Sbjct: 6357 acaacattaataacaacaaa 6338
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>gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114687

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    acaacattaataacaacaaa 73
             ||||||||||||||||||||
Sbjct: 93522 acaacattaataacaacaaa 93503
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>emb|BX323842.8| Zebrafish DNA sequence from clone CH211-1M7, complete sequence
          Length = 162929

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   cagggcctggtttgcatagt 272
             ||||||||||||||||||||
Sbjct: 50700 cagggcctggtttgcatagt 50681
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>gb|AC016725.5| Homo sapiens BAC clone RP11-341H1 from 2, complete sequence
          Length = 164180

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    ttatacaacattaataacaa 69
             ||||||||||||||||||||
Sbjct: 18181 ttatacaacattaataacaa 18200
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>gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete sequence
          Length = 156454

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    acaacattaataacaacaaa 73
             ||||||||||||||||||||
Sbjct: 12198 acaacattaataacaacaaa 12217
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>emb|CT573097.3| RP43-080H03, complete sequence
          Length = 174747

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     acaacattaataacaacaaa 73
              ||||||||||||||||||||
Sbjct: 111744 acaacattaataacaacaaa 111763
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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
            complete sequence
          Length = 867699

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attatacaacattaataaca 68
            ||||||||||||||||||||
Sbjct: 4558 attatacaacattaataaca 4577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,921,213
Number of Sequences: 3902068
Number of extensions: 1921213
Number of successful extensions: 36772
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36724
Number of HSP's gapped (non-prelim): 45
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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