ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chr... 46 0.018
2gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete ... 46 0.018
3ref|NM_070587.2| Caenorhabditis elegans Y43D4A.5 (Y43D4A.5) mRNA... 42 0.29
4emb|AL132846.1|CEY43D4A Caenorhabditis elegans YAC Y43D4A, compl... 42 0.29
5ref|XM_641733.1| Dictyostelium discoideum putative GCN2 family k... 40 1.1
6emb|BX936451.13| Zebrafish DNA sequence from clone CH211-201F1 i... 38 4.5
7gb|AC121798.3| Mus musculus BAC clone RP23-426H21 from chromosom... 38 4.5
8gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complet... 38 4.5
9gb|AC150419.2| Branchiostoma floridae clone CH302-73J11, complet... 38 4.5
10emb|CR735102.8| Zebrafish DNA sequence from clone DKEYP-8H9 in l... 38 4.5
11emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in... 38 4.5
12gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, comp... 38 4.5
13gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complet... 38 4.5
14gb|AC007859.11| Homo sapiens, clone RP11-41A1, complete sequence 38 4.5
15gb|AC022031.8| Homo sapiens chromosome 18, clone RP11-397A16, co... 38 4.5
16gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, compl... 38 4.5
17gb|AC026792.5| Homo sapiens chromosome 5 clone CTD-2269E23, comp... 38 4.5
18gb|AC010385.3|AC010385 Homo sapiens chromosome 5 clone CTD-2269E... 38 4.5
19gb|AF090937.1|AF090937 Homo sapiens clone HQ0618 PRO0618 mRNA, c... 38 4.5
20emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, com... 38 4.5
21dbj|AP003152.1| Mus musculus genomic DNA, chromosome 16q clone:R... 38 4.5
22gb|AC165248.2| Mus musculus BAC clone RP24-219D2 from chromosome... 38 4.5
23emb|AL928613.3| Mouse DNA sequence from clone RP23-33E20 on chro... 38 4.5

>emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chromosome X, complete
             sequence
          Length = 135711

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 39    tcaaaattagaacttttcaaagcttcc 65
             |||||| ||||||||||||||||||||
Sbjct: 35579 tcaaaaatagaacttttcaaagcttcc 35553



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>gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete sequence
          Length = 156454

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 39     tcaaaattagaacttttcaaagcttcc 65
              |||||| ||||||||||||||||||||
Sbjct: 116687 tcaaaaatagaacttttcaaagcttcc 116713



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>ref|NM_070587.2| Caenorhabditis elegans Y43D4A.5 (Y43D4A.5) mRNA, complete cds
          Length = 4947

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 40  caaaattagaacttttcaaag 60
           |||||||||||||||||||||
Sbjct: 168 caaaattagaacttttcaaag 188



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>emb|AL132846.1|CEY43D4A Caenorhabditis elegans YAC Y43D4A, complete sequence
          Length = 59321

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    caaaattagaacttttcaaag 60
             |||||||||||||||||||||
Sbjct: 33144 caaaattagaacttttcaaag 33164



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>ref|XM_641733.1| Dictyostelium discoideum putative GCN2 family kinase (DDB0229432),
           partial mRNA
          Length = 3237

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  aatacatcaaaattagaact 52
           ||||||||||||||||||||
Sbjct: 409 aatacatcaaaattagaact 428



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>emb|BX936451.13| Zebrafish DNA sequence from clone CH211-201F1 in linkage group 21,
              complete sequence
          Length = 169828

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     aaaattagaacttttcaaa 59
              |||||||||||||||||||
Sbjct: 137308 aaaattagaacttttcaaa 137326



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>gb|AC121798.3| Mus musculus BAC clone RP23-426H21 from chromosome 2, complete sequence
          Length = 209189

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    tctccttaatacatcaaaattag 48
             ||||||| |||||||||||||||
Sbjct: 39388 tctcctttatacatcaaaattag 39410



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>gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complete sequence
          Length = 230128

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     aaattagaacttttcaaag 60
              |||||||||||||||||||
Sbjct: 139633 aaattagaacttttcaaag 139651



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>gb|AC150419.2| Branchiostoma floridae clone CH302-73J11, complete sequence
          Length = 185777

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    gaacttttcaaagcttcca 66
             |||||||||||||||||||
Sbjct: 20622 gaacttttcaaagcttcca 20640



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>emb|CR735102.8| Zebrafish DNA sequence from clone DKEYP-8H9 in linkage group 21,
             complete sequence
          Length = 118807

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    aaaattagaacttttcaaa 59
             |||||||||||||||||||
Sbjct: 88333 aaaattagaacttttcaaa 88351



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>emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in linkage group 3,
             complete sequence
          Length = 196854

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 33    aatacatcaaaattagaactttt 55
             ||||||| |||||||||||||||
Sbjct: 45645 aatacataaaaattagaactttt 45667



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>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence
          Length = 194624

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     aaaattagaacttttcaaa 59
              |||||||||||||||||||
Sbjct: 178267 aaaattagaacttttcaaa 178249



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>gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complete sequence
          Length = 169814

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     ttagaacttttcaaagctt 63
              |||||||||||||||||||
Sbjct: 102582 ttagaacttttcaaagctt 102600



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>gb|AC007859.11| Homo sapiens, clone RP11-41A1, complete sequence
          Length = 157267

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    attagaacttttcaaagct 62
             |||||||||||||||||||
Sbjct: 76288 attagaacttttcaaagct 76270



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>gb|AC022031.8| Homo sapiens chromosome 18, clone RP11-397A16, complete sequence
          Length = 202566

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    attagaacttttcaaagct 62
             |||||||||||||||||||
Sbjct: 71364 attagaacttttcaaagct 71382



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>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence
          Length = 168575

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   aaaattagaacttttcaaa 59
            |||||||||||||||||||
Sbjct: 7767 aaaattagaacttttcaaa 7749



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>gb|AC026792.5| Homo sapiens chromosome 5 clone CTD-2269E23, complete sequence
          Length = 134542

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     taatacatcaaaattagaa 50
              |||||||||||||||||||
Sbjct: 115183 taatacatcaaaattagaa 115201



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>gb|AC010385.3|AC010385 Homo sapiens chromosome 5 clone CTD-2269E23, complete sequence
          Length = 95084

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    taatacatcaaaattagaa 50
             |||||||||||||||||||
Sbjct: 62001 taatacatcaaaattagaa 62019



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>gb|AF090937.1|AF090937 Homo sapiens clone HQ0618 PRO0618 mRNA, complete cds
          Length = 1620

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 45   ttagaacttttcaaagctt 63
            |||||||||||||||||||
Sbjct: 1147 ttagaacttttcaaagctt 1129



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>emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, complete sequence
          Length = 314838

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     atcaaaattagaacttttc 56
              |||||||||||||||||||
Sbjct: 194166 atcaaaattagaacttttc 194148



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     atcaaaattagaacttttc 56
              |||||||||||||||||||
Sbjct: 187677 atcaaaattagaacttttc 187695



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>dbj|AP003152.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-356B22, complete
             sequences
          Length = 190116

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 44    attagaacttttcaaagcttcca 66
             ||||||| |||||||||||||||
Sbjct: 92800 attagaagttttcaaagcttcca 92778



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>gb|AC165248.2| Mus musculus BAC clone RP24-219D2 from chromosome 16, complete sequence
          Length = 190373

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 44     attagaacttttcaaagcttcca 66
              ||||||| |||||||||||||||
Sbjct: 117707 attagaagttttcaaagcttcca 117729



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>emb|AL928613.3| Mouse DNA sequence from clone RP23-33E20 on chromosome 2, complete
             sequence
          Length = 102804

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    tctccttaatacatcaaaattag 48
             ||||||| |||||||||||||||
Sbjct: 39678 tctcctttatacatcaaaattag 39700


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 817,656
Number of Sequences: 3902068
Number of extensions: 817656
Number of successful extensions: 60539
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60505
Number of HSP's gapped (non-prelim): 34
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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