| Clone Name | rbags8m21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chromosome X, complete sequence Length = 135711 Score = 46.1 bits (23), Expect = 0.018 Identities = 26/27 (96%) Strand = Plus / Minus Query: 39 tcaaaattagaacttttcaaagcttcc 65 |||||| |||||||||||||||||||| Sbjct: 35579 tcaaaaatagaacttttcaaagcttcc 35553
>gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete sequence Length = 156454 Score = 46.1 bits (23), Expect = 0.018 Identities = 26/27 (96%) Strand = Plus / Plus Query: 39 tcaaaattagaacttttcaaagcttcc 65 |||||| |||||||||||||||||||| Sbjct: 116687 tcaaaaatagaacttttcaaagcttcc 116713
>ref|NM_070587.2| Caenorhabditis elegans Y43D4A.5 (Y43D4A.5) mRNA, complete cds Length = 4947 Score = 42.1 bits (21), Expect = 0.29 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caaaattagaacttttcaaag 60 ||||||||||||||||||||| Sbjct: 168 caaaattagaacttttcaaag 188
>emb|AL132846.1|CEY43D4A Caenorhabditis elegans YAC Y43D4A, complete sequence Length = 59321 Score = 42.1 bits (21), Expect = 0.29 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caaaattagaacttttcaaag 60 ||||||||||||||||||||| Sbjct: 33144 caaaattagaacttttcaaag 33164
>ref|XM_641733.1| Dictyostelium discoideum putative GCN2 family kinase (DDB0229432), partial mRNA Length = 3237 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aatacatcaaaattagaact 52 |||||||||||||||||||| Sbjct: 409 aatacatcaaaattagaact 428
>emb|BX936451.13| Zebrafish DNA sequence from clone CH211-201F1 in linkage group 21, complete sequence Length = 169828 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aaaattagaacttttcaaa 59 ||||||||||||||||||| Sbjct: 137308 aaaattagaacttttcaaa 137326
>gb|AC121798.3| Mus musculus BAC clone RP23-426H21 from chromosome 2, complete sequence Length = 209189 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tctccttaatacatcaaaattag 48 ||||||| ||||||||||||||| Sbjct: 39388 tctcctttatacatcaaaattag 39410
>gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complete sequence Length = 230128 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 aaattagaacttttcaaag 60 ||||||||||||||||||| Sbjct: 139633 aaattagaacttttcaaag 139651
>gb|AC150419.2| Branchiostoma floridae clone CH302-73J11, complete sequence Length = 185777 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 gaacttttcaaagcttcca 66 ||||||||||||||||||| Sbjct: 20622 gaacttttcaaagcttcca 20640
>emb|CR735102.8| Zebrafish DNA sequence from clone DKEYP-8H9 in linkage group 21, complete sequence Length = 118807 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aaaattagaacttttcaaa 59 ||||||||||||||||||| Sbjct: 88333 aaaattagaacttttcaaa 88351
>emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in linkage group 3, complete sequence Length = 196854 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 aatacatcaaaattagaactttt 55 ||||||| ||||||||||||||| Sbjct: 45645 aatacataaaaattagaactttt 45667
>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence Length = 194624 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaaattagaacttttcaaa 59 ||||||||||||||||||| Sbjct: 178267 aaaattagaacttttcaaa 178249
>gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complete sequence Length = 169814 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ttagaacttttcaaagctt 63 ||||||||||||||||||| Sbjct: 102582 ttagaacttttcaaagctt 102600
>gb|AC007859.11| Homo sapiens, clone RP11-41A1, complete sequence Length = 157267 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 attagaacttttcaaagct 62 ||||||||||||||||||| Sbjct: 76288 attagaacttttcaaagct 76270
>gb|AC022031.8| Homo sapiens chromosome 18, clone RP11-397A16, complete sequence Length = 202566 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 attagaacttttcaaagct 62 ||||||||||||||||||| Sbjct: 71364 attagaacttttcaaagct 71382
>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence Length = 168575 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaaattagaacttttcaaa 59 ||||||||||||||||||| Sbjct: 7767 aaaattagaacttttcaaa 7749
>gb|AC026792.5| Homo sapiens chromosome 5 clone CTD-2269E23, complete sequence Length = 134542 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 taatacatcaaaattagaa 50 ||||||||||||||||||| Sbjct: 115183 taatacatcaaaattagaa 115201
>gb|AC010385.3|AC010385 Homo sapiens chromosome 5 clone CTD-2269E23, complete sequence Length = 95084 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 taatacatcaaaattagaa 50 ||||||||||||||||||| Sbjct: 62001 taatacatcaaaattagaa 62019
>gb|AF090937.1|AF090937 Homo sapiens clone HQ0618 PRO0618 mRNA, complete cds Length = 1620 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 ttagaacttttcaaagctt 63 ||||||||||||||||||| Sbjct: 1147 ttagaacttttcaaagctt 1129
>emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, complete sequence Length = 314838 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 atcaaaattagaacttttc 56 ||||||||||||||||||| Sbjct: 194166 atcaaaattagaacttttc 194148 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 atcaaaattagaacttttc 56 ||||||||||||||||||| Sbjct: 187677 atcaaaattagaacttttc 187695
>dbj|AP003152.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-356B22, complete sequences Length = 190116 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 44 attagaacttttcaaagcttcca 66 ||||||| ||||||||||||||| Sbjct: 92800 attagaagttttcaaagcttcca 92778
>gb|AC165248.2| Mus musculus BAC clone RP24-219D2 from chromosome 16, complete sequence Length = 190373 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 44 attagaacttttcaaagcttcca 66 ||||||| ||||||||||||||| Sbjct: 117707 attagaagttttcaaagcttcca 117729
>emb|AL928613.3| Mouse DNA sequence from clone RP23-33E20 on chromosome 2, complete sequence Length = 102804 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tctccttaatacatcaaaattag 48 ||||||| ||||||||||||||| Sbjct: 39678 tctcctttatacatcaaaattag 39700 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 817,656 Number of Sequences: 3902068 Number of extensions: 817656 Number of successful extensions: 60539 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60505 Number of HSP's gapped (non-prelim): 34 length of query: 101 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 80 effective length of database: 17,151,101,840 effective search space: 1372088147200 effective search space used: 1372088147200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)