ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8m20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3 99 2e-21
2R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2 99 2e-21
3R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4 98 5e-21
4R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1 97 1e-20
5RL13A_PICMA (O65055) 60S ribosomal protein L13a 94 1e-19
6RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation... 89 3e-18
7RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a 89 3e-18
8RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment) 89 3e-18
9RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a 89 3e-18
10RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a 89 3e-18
11RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly b... 89 3e-18
12RL13A_LUPLU (O49885) 60S ribosomal protein L13a 89 4e-18
13RL13A_RAT (P35427) 60S ribosomal protein L13a 87 1e-17
14RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation... 87 1e-17
15RL13A_CYAPA (P93099) 60S ribosomal protein L13a 86 2e-17
16RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A 80 2e-15
17RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A 79 4e-15
18RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A 77 1e-14
19RL13A_CAEEL (Q27389) 60S ribosomal protein L13a 75 6e-14
20RL16_NEUCR (Q9P720) 60S ribosomal protein L16 68 8e-12
21RL16B_SCHPO (O42991) 60S ribosomal protein L16-B 65 4e-11
22RL16A_SCHPO (O42848) 60S ribosomal protein L16-A 65 4e-11
23RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22) 65 5e-11
24RL16C_SCHPO (O43004) 60S ribosomal protein L16-C 63 2e-10
25RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23) 63 2e-10
26RL13_PYRHO (O59300) 50S ribosomal protein L13P 43 2e-04
27RL13_PYRAB (Q9V196) 50S ribosomal protein L13P 43 2e-04
28RL13_ARCFU (O29137) 50S ribosomal protein L13P 42 5e-04
29RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50... 41 0.001
30RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13) 39 0.004
31RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P 38 0.009
32RL13_METJA (P54023) 50S ribosomal protein L13P 37 0.011
33RL13_AERPE (Q9YB50) 50S ribosomal protein L13P 36 0.025
34RL13_HELPY (P56038) 50S ribosomal protein L13 30 2.4
35RL13_HELPJ (Q9ZMY6) 50S ribosomal protein L13 28 6.9
36GLYA_HALSA (Q9HPY5) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 6.9
37GLYA_NATPD (Q3IRX5) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.0
38GLYA_SYMTH (Q67N41) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.0
39PP14B_RAT (Q8K3F3) Protein phosphatase 1 regulatory subunit 14B ... 28 9.0
40PP14B_MOUSE (Q62084) Protein phosphatase 1 regulatory subunit 14... 28 9.0
41RL13_SULSO (P95991) 50S ribosomal protein L13P 28 9.0
42GLYA_SALTY (P0A2E1) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.0
43GLYA_SALTI (P0A2E2) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.0
44GLYA_SALPA (Q5PII3) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.0
45GLYA_SALCH (Q57LF7) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.0 
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3|
          Length = 206

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 46/50 (92%), Positives = 46/50 (92%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNTKPSHGPIHFRAPSKIFWRTVRGM PHKT RG AALARLK FEG
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEG 112
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>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2|
          Length = 206

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 46/50 (92%), Positives = 46/50 (92%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNTKPSHGPIHFRAPSKIFWRTVRGM PHKT RG AALARLK FEG
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEG 112
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>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4|
          Length = 206

 Score = 98.2 bits (243), Expect = 5e-21
 Identities = 45/50 (90%), Positives = 46/50 (92%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNTKPSHGPIHFRAPSKIFWRTVRGM PHKT RG AALARLK +EG
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEG 112
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>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1|
          Length = 206

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 45/50 (90%), Positives = 45/50 (90%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNTKPSHGPIHFRAPSKIFWRTVRGM PHKT RG  ALARLK FEG
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEG 112
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>RL13A_PICMA (O65055) 60S ribosomal protein L13a|
          Length = 206

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 42/50 (84%), Positives = 45/50 (90%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNTKPSHGPIHFRAPS+I WRT+RGM PHKT RG AALA L+AFEG
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEG 112
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>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198|
           homolog) (Fragment)
          Length = 189

 Score = 89.4 bits (220), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK F+G
Sbjct: 44  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDG 93
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>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a|
          Length = 202

 Score = 89.4 bits (220), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK F+G
Sbjct: 57  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDG 106
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>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)|
          Length = 137

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK F+G
Sbjct: 54  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 103
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>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a|
          Length = 202

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK F+G
Sbjct: 57  LRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 106
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>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a|
          Length = 202

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK F+G
Sbjct: 57  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 106
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>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)|
          Length = 202

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK F+G
Sbjct: 57  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 106
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>RL13A_LUPLU (O49885) 60S ribosomal protein L13a|
          Length = 205

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 43/50 (86%), Positives = 44/50 (88%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNTKPSHGPIH  APSKIFWRTVRGM PHKT RGE ALARLK +EG
Sbjct: 63  LRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEG 111
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>RL13A_RAT (P35427) 60S ribosomal protein L13a|
          Length = 202

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 39/50 (78%), Positives = 42/50 (84%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK  +G
Sbjct: 57  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDG 106
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>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)|
           (Tum-P198 antigen)
          Length = 202

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 39/50 (78%), Positives = 42/50 (84%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKRMNT PS GP HFRAPS+IFWRTVRGM PHKT RG+AAL RLK  +G
Sbjct: 57  LRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDG 106
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>RL13A_CYAPA (P93099) 60S ribosomal protein L13a|
          Length = 200

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           L+KRMNT P  GP HFR+P++I WRT+RGM PHKTPRG AAL RLKAFEG
Sbjct: 57  LKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEG 106
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>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A|
          Length = 204

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 34/50 (68%), Positives = 41/50 (82%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKR N  P+ GP HFRAPSKI W+TVRGM PHKT RG++AL RL+A++G
Sbjct: 60  LRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDG 109
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>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A|
          Length = 205

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 34/50 (68%), Positives = 41/50 (82%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKR N  P+ GP HFRAPS+IF++ VRGM PHKT RG+AALARL+ F+G
Sbjct: 60  LRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDG 109
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>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A|
          Length = 204

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 33/50 (66%), Positives = 40/50 (80%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKR N  P+ GP HFRAPSKI W+TVRGM PHKT RG+ AL RL++++G
Sbjct: 60  LRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDG 109
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>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a|
          Length = 202

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 33/50 (66%), Positives = 37/50 (74%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRKR N  P+ G  H+RAP KIFWRTVRGM PHKT RG  AL  L+A+EG
Sbjct: 59  LRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEG 108
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>RL16_NEUCR (Q9P720) 60S ribosomal protein L16|
          Length = 202

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 33/51 (64%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = -3

Query: 152 LRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRK     P+ G P HFRAPS+IF++ VRGM PHKT RG AAL RLK FEG
Sbjct: 59  LRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEG 109
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>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B|
          Length = 197

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 31/50 (62%), Positives = 35/50 (70%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRK     PS G  HFRAPS+IF + VRGM PHKT RG+AAL  L+A EG
Sbjct: 59  LRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEG 108
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>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A|
          Length = 197

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 31/50 (62%), Positives = 35/50 (70%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRK     PS G  HFRAPS+IF + VRGM PHKT RG+AAL  L+A EG
Sbjct: 59  LRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEG 108
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>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)|
          Length = 198

 Score = 65.1 bits (157), Expect = 5e-11
 Identities = 30/50 (60%), Positives = 36/50 (72%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRK      + GP HFRAPS+IF++ +RGM  HKT RG+AAL RLK FEG
Sbjct: 57  LRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEG 106
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>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C|
          Length = 197

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 30/50 (60%), Positives = 33/50 (66%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRK     PS G  HFRAPS+IF + VRGM PHKT RG  AL  L+A EG
Sbjct: 59  LRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEG 108
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>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)|
          Length = 197

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 29/50 (58%), Positives = 35/50 (70%)
 Frame = -3

Query: 152 LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           LRK      + GP HFRAPS+I ++ +RGM  HKT RG+AAL RLK FEG
Sbjct: 56  LRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEG 105
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>RL13_PYRHO (O59300) 50S ribosomal protein L13P|
          Length = 142

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = -3

Query: 143 RMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           R  T P  GP + +   +I  RT+RGM P KT RG  A  RLK + G
Sbjct: 56  RTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVG 102
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>RL13_PYRAB (Q9V196) 50S ribosomal protein L13P|
          Length = 142

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = -3

Query: 143 RMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           R  T P  GP + +   +I  RT+RGM P KT RG  A  RLK + G
Sbjct: 56  RTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVG 102
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>RL13_ARCFU (O29137) 50S ribosomal protein L13P|
          Length = 156

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 21/39 (53%), Positives = 24/39 (61%)
 Frame = -3

Query: 119 GPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           GP   R P +IF RTVRGM P K+ RG  A  RL+ F G
Sbjct: 76  GPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMG 114
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>RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50S ribosomal|
           protein L13P; 30S ribosomal protein S9P]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -3

Query: 119 GPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           GP + R P  IF RTVRGM P+K  +G  A   LKA+ G
Sbjct: 67  GPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVG 105
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>RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)|
          Length = 145

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 146 KRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           KR++    +G  + + P  IF RT+RGM PHK  RG  A   ++ + G
Sbjct: 59  KRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG 106
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>RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P|
          Length = 145

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 149 RKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           R R N     GP + + P  IF R +RGM P+K   G  AL  ++ + G
Sbjct: 58  RTRANLGSDRGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVG 106
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>RL13_METJA (P54023) 50S ribosomal protein L13P|
          Length = 137

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 149 RKRMNTKPSHGPIHFRAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           +K +      GP   R P  I  RT+R M P+K P+G  A  R+K + G
Sbjct: 55  KKNVANPRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVG 103
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>RL13_AERPE (Q9YB50) 50S ribosomal protein L13P|
          Length = 155

 Score = 36.2 bits (82), Expect = 0.025
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 104 RAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           R P ++F   VRGM P    RG  ALARL+ + G
Sbjct: 79  RTPQRLFKHAVRGMLPKNKARGRRALARLRVYVG 112
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>RL13_HELPY (P56038) 50S ribosomal protein L13|
          Length = 141

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 104 RAPSKIFWRTVRGMXPHKTPRGEAALARLKAF 9
           +AP K++   VRGM P KT  G+A + +LK +
Sbjct: 94  KAPEKLYHLAVRGMLP-KTKLGKAMIKKLKVY 124
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>RL13_HELPJ (Q9ZMY6) 50S ribosomal protein L13|
          Length = 141

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 104 RAPSKIFWRTVRGMXPHKTPRGEAALARLKAF 9
           + P K++   VRGM P KT  G+A + +LK +
Sbjct: 94  KTPEKLYHLAVRGMLP-KTKLGKAMIKKLKVY 124
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>GLYA_HALSA (Q9HPY5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 415

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = +3

Query: 15  LQPGERSLAAGRLVRXHAAHGAPENFRGGA------EVDGTVRRLGVHPLAE 152
           L PG++ L+       H +HG P NF G        EVD    RL    L E
Sbjct: 108 LAPGDKILSLDLTHGGHLSHGHPANFAGQLYEVEQYEVDAETGRLDYEALRE 159
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>GLYA_NATPD (Q3IRX5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 424

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   LERLQPGERSLAAGRLVRXHAAHGAPENFRG 98
           L  L+PG+R L+       H +HG P NF G
Sbjct: 105 LAMLEPGDRILSLELEHGGHLSHGHPANFTG 135
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>GLYA_SYMTH (Q67N41) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 412

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 15  LQPGERSLAAGRLVRXHAAHGAPENFRG 98
           LQPG+  L        H  HG+P NF G
Sbjct: 106 LQPGDTVLGMNLAQGGHLTHGSPVNFSG 133
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>PP14B_RAT (Q8K3F3) Protein phosphatase 1 regulatory subunit 14B (Phosphatase|
           holoenzyme inhibitor 1) (PHI-1) (Ubiquitous
           PKC-potentiated PP1 inhibitor)
          Length = 147

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   ALERLQPGERSLAAGRLVRXHAAHGAPENFRGGAEVDGTVRRLG 134
           AL    PG  S + G  V   +  GA     GGA+ DG VRR G
Sbjct: 11  ALAAPAPGPGSGSTGPRVYFQSPPGAAGEGPGGADDDGPVRRQG 54
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>PP14B_MOUSE (Q62084) Protein phosphatase 1 regulatory subunit 14B (Phosphatase|
           holoenzyme inhibitor 1) (PHI-1) (Phospholipase C beta 3
           neighbouring gene protein)
          Length = 147

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   ALERLQPGERSLAAGRLVRXHAAHGAPENFRGGAEVDGTVRRLG 134
           AL    PG  S + G  V   +  GA     GGA+ DG VRR G
Sbjct: 11  ALAAPAPGPGSGSTGPRVYFQSPPGAAGEGPGGADDDGPVRRQG 54
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>RL13_SULSO (P95991) 50S ribosomal protein L13P|
          Length = 149

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 104 RAPSKIFWRTVRGMXPHKTPRGEAALARLKAFEG 3
           R+P  I  RT+RGM P K+ +G   L  +K + G
Sbjct: 78  RSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVG 110
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>GLYA_SALTY (P0A2E1) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 15  LQPGERSLAAGRLVRXHAAHGAPENFRG 98
           LQPG+  L        H  HG+P NF G
Sbjct: 110 LQPGDTVLGMNLAQGGHLTHGSPVNFSG 137
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>GLYA_SALTI (P0A2E2) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 15  LQPGERSLAAGRLVRXHAAHGAPENFRG 98
           LQPG+  L        H  HG+P NF G
Sbjct: 110 LQPGDTVLGMNLAQGGHLTHGSPVNFSG 137
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>GLYA_SALPA (Q5PII3) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 15  LQPGERSLAAGRLVRXHAAHGAPENFRG 98
           LQPG+  L        H  HG+P NF G
Sbjct: 110 LQPGDTVLGMNLAQGGHLTHGSPVNFSG 137
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>GLYA_SALCH (Q57LF7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 417

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 15  LQPGERSLAAGRLVRXHAAHGAPENFRG 98
           LQPG+  L        H  HG+P NF G
Sbjct: 110 LQPGDTVLGMNLAQGGHLTHGSPVNFSG 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,299,992
Number of Sequences: 219361
Number of extensions: 294927
Number of successful extensions: 1110
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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