ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8m19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108796.1| Zea mays PCO073308 mRNA sequence Length = 1147 Score = 105 bits (53), Expect = 4e-20 Identities = 69/75 (92%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 869 cttggcaatcttctctgccttggcgatgacctcctctattcctccaaccatgtagaatga 810 Query: 116 ctgctctgaaaggtc 130 ||| |||| |||||| Sbjct: 809 ctgttctggaaggtc 795
>ref|NM_192090.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1668 Score = 97.6 bits (49), Expect = 9e-18 Identities = 68/75 (90%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1653 cttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaatga 1594 Query: 116 ctgctctgaaaggtc 130 |||||| | |||||| Sbjct: 1593 ctgctcaggaaggtc 1579
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 9e-18 Identities = 68/75 (90%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 28274916 cttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaatga 28274857 Query: 116 ctgctctgaaaggtc 130 |||||| | |||||| Sbjct: 28274856 ctgctcaggaaggtc 28274842
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 97.6 bits (49), Expect = 9e-18 Identities = 68/75 (90%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 109423 cttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaatga 109364 Query: 116 ctgctctgaaaggtc 130 |||||| | |||||| Sbjct: 109363 ctgctcaggaaggtc 109349
>dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093I16, full insert sequence Length = 1688 Score = 97.6 bits (49), Expect = 9e-18 Identities = 68/75 (90%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1475 cttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaatga 1416 Query: 116 ctgctctgaaaggtc 130 |||||| | |||||| Sbjct: 1415 ctgctcaggaaggtc 1401
>dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full insert sequence Length = 2050 Score = 97.6 bits (49), Expect = 9e-18 Identities = 68/75 (90%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 1770 cttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaatga 1711 Query: 116 ctgctctgaaaggtc 130 |||||| | |||||| Sbjct: 1710 ctgctcaggaaggtc 1696
>dbj|AB003549.1| Pisum sativum mRNA for F1 ATPase, complete cds Length = 1978 Score = 81.8 bits (41), Expect = 5e-13 Identities = 66/75 (88%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| |||||||||||||||| |||||||||| || || || ||||||||||| |||| Sbjct: 1681 cttggcaatcttctctgccttcgcaatgacctcttcaataccaccaaccatgtaaaatga 1622 Query: 116 ctgctctgaaaggtc 130 ||||||||||||||| Sbjct: 1621 ctgctctgaaaggtc 1607
>gb|BT012914.1| Lycopersicon esculentum clone 114032R, mRNA sequence Length = 2060 Score = 79.8 bits (40), Expect = 2e-12 Identities = 79/93 (84%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||||||||||||||||| ||| ||||| || ||||| ||||||| Sbjct: 1754 cttggcaatcttctctgccttggcaatgacctcctcgattccaccgaccatatagaatga 1695 Query: 116 ctgctctgaaaggtcgtantatttcccatccag 148 || |||||||| || | |||||||| ||||| Sbjct: 1694 ttgttctgaaagatcatcgtatttcccgtccag 1662
>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence Length = 115175 Score = 69.9 bits (35), Expect = 2e-09 Identities = 77/92 (83%) Strand = Plus / Plus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| |||||||||||||||| |||||||| | || || || || ||||| || ||||| Sbjct: 113035 cttggcaatcttctctgcctttgcaatgacttcatcaataccaccgaccatataaaatgc 113094 Query: 116 ctgctctgaaaggtcgtantatttcccatcca 147 ||||||||||||||| | ||||| ||||||| Sbjct: 113095 ctgctctgaaaggtcatcatatttgccatcca 113126
>emb|X02868.1|NPATP21 Nicotiana plubaginifolia atp2-1 gene for mitochondrial ATP synthase beta subunit Length = 5351 Score = 69.9 bits (35), Expect = 2e-09 Identities = 77/92 (83%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||| ||||||||||||| || ||||| |||||||| || || | Sbjct: 5005 cttggcaatcttctctgctttggcaatgacctcgtcgattccaccaaccatataaaacga 4946 Query: 116 ctgctctgaaaggtcgtantatttcccatcca 147 |||||||||||||| | ||||| ||||||| Sbjct: 4945 ttgctctgaaaggtcatcatatttgccatcca 4914
>gb|U96496.1|NSU96496 Nicotiana sylvestris ATPase beta subunit (nsatp2.1.1) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1987 Score = 69.9 bits (35), Expect = 2e-09 Identities = 77/92 (83%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| ||||||||||||| ||||||||||||| || ||||| |||||||| || || | Sbjct: 1673 cttggcaatcttctctgctttggcaatgacctcgtcgattccaccaaccatataaaacga 1614 Query: 116 ctgctctgaaaggtcgtantatttcccatcca 147 |||||||||||||| | ||||| ||||||| Sbjct: 1613 ttgctctgaaaggtcatcatatttgccatcca 1582
>gb|L27812.1|ACTPKIWC Actinidia deliciosa var. deliciosa (pKIWI505) mRNA, complete cds Length = 729 Score = 65.9 bits (33), Expect = 3e-08 Identities = 44/48 (91%) Strand = Plus / Minus Query: 62 aatcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 501 aatcttctctgccttggcaatgacctcttcgatacctccaaccatgta 454
>gb|U96498.1|U96498 Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) gene, nuclear gene encoding mitochondrial protein, complete cds Length = 5101 Score = 61.9 bits (31), Expect = 5e-07 Identities = 76/92 (82%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| |||| || ||||||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 4797 cttggcaattttttctgccttggcaatgacctcatcgattccaccaaccatatagaagga 4738 Query: 116 ctgctctgaaaggtcgtantatttcccatcca 147 ||| |||||||| || | ||||| ||||||| Sbjct: 4737 ctgttctgaaagatcatcgtattttccatcca 4706
>gb|U96497.1|NSU96497 Nicotiana sylvestris ATPase beta subunit (nsatp2.2.1) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1983 Score = 61.9 bits (31), Expect = 5e-07 Identities = 76/92 (82%) Strand = Plus / Minus Query: 56 cttgncaatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgc 115 |||| |||| || ||||||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 1658 cttggcaattttttctgccttggcaatgacctcatcgattccaccaaccatatagaagga 1599 Query: 116 ctgctctgaaaggtcgtantatttcccatcca 147 ||| |||||||| || | ||||| ||||||| Sbjct: 1598 ctgttctgaaagatcatcgtattttccatcca 1567
>gb|BT018722.1| Zea mays clone EL01N0518D08.d mRNA sequence Length = 1977 Score = 58.0 bits (29), Expect = 8e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 66 ttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctc 121 ||||| ||||| |||||||| | ||| || ||||||||||||||||||| |||||| Sbjct: 1670 ttctcggccttagcaatgacttcctcaatgcctccaaccatgtagaatgactgctc 1615
>gb|BT016806.1| Zea mays clone Contig639 mRNA sequence Length = 2139 Score = 58.0 bits (29), Expect = 8e-06 Identities = 68/82 (82%) Strand = Plus / Minus Query: 40 cttatcaagcattctncttgncaatcttctctgccttggcaatgacctnctctattcctc 99 ||||| ||||| || |||| |||| ||||| ||||| |||||||| | ||| || || | Sbjct: 1715 cttatgaagcagactccttggcaattttctcagccttagcaatgacttcctcaatgccac 1656 Query: 100 caaccatgtagaatgcctgctc 121 ||||||||||||||| |||||| Sbjct: 1655 caaccatgtagaatgactgctc 1634
>emb|X54233.1|ZMATP2MT Maize ATP2 mRNA for mitochondrial ATP synthase beta subunit Length = 2029 Score = 58.0 bits (29), Expect = 8e-06 Identities = 68/82 (82%) Strand = Plus / Minus Query: 40 cttatcaagcattctncttgncaatcttctctgccttggcaatgacctnctctattcctc 99 ||||| ||||| || |||| |||| ||||| ||||| |||||||| | ||| || || | Sbjct: 1716 cttatgaagcagactccttggcaattttctcagccttagcaatgacttcctcaatgccac 1657 Query: 100 caaccatgtagaatgcctgctc 121 ||||||||||||||| |||||| Sbjct: 1656 caaccatgtagaatgactgctc 1635
>emb|AJ843974.1| Plantago major partial mRNA for mitochondrial F0 ATP synthase beta chain (atp2 gene) Length = 888 Score = 58.0 bits (29), Expect = 8e-06 Identities = 46/52 (88%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatg 114 |||||||| |||||||||| ||||| || ||||||||||||||||| |||| Sbjct: 550 atcttctcagccttggcaaggacctcttcgattcctccaaccatgtaaaatg 499
>gb|M36087.1|MZEMT2BATP Zea mays mitochondrial F-1-ATPase subunit 2 mRNA, complete cds; nuclear gene for mitochondrial product Length = 2054 Score = 58.0 bits (29), Expect = 8e-06 Identities = 68/82 (82%) Strand = Plus / Minus Query: 40 cttatcaagcattctncttgncaatcttctctgccttggcaatgacctnctctattcctc 99 ||||| ||||| || |||| |||| ||||| ||||| |||||||| | ||| || || | Sbjct: 1668 cttatgaagcagactccttggcaattttctcagccttagcaatgacttcctcaatgccac 1609 Query: 100 caaccatgtagaatgcctgctc 121 ||||||||||||||| |||||| Sbjct: 1608 caaccatgtagaatgactgctc 1587
>gb|AY103634.1| Zea mays PCO073309 mRNA sequence Length = 1799 Score = 58.0 bits (29), Expect = 8e-06 Identities = 49/56 (87%) Strand = Plus / Minus Query: 66 ttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctc 121 ||||| ||||| |||||||| | ||| || ||||||||||||||||||| |||||| Sbjct: 1465 ttctcggccttagcaatgacttcctcaatgcctccaaccatgtagaatgactgctc 1410
>emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta subunit Length = 1891 Score = 56.0 bits (28), Expect = 3e-05 Identities = 51/59 (86%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctc 121 ||||||||||||||||| ||||| | || || ||||||||||||||||| || ||||| Sbjct: 1657 atcttctctgccttggcgatgacttcgtcgatgcctccaaccatgtagaacgcgtgctc 1599
>ref|XM_475868.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1659 Score = 54.0 bits (27), Expect = 1e-04 Identities = 70/85 (82%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctct 122 |||||||| || || |||||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct: 1637 atcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaatgactgctcg 1578 Query: 123 gaaaggtcgtantatttcccatcca 147 | |||||| | ||||||||||||| Sbjct: 1577 ggaaggtcatcatatttcccatcca 1553
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 54.0 bits (27), Expect = 1e-04 Identities = 70/85 (82%) Strand = Plus / Plus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctct 122 |||||||| || || |||||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct: 164747 atcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaatgactgctcg 164806 Query: 123 gaaaggtcgtantatttcccatcca 147 | |||||| | ||||||||||||| Sbjct: 164807 ggaaggtcatcatatttcccatcca 164831
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 54.0 bits (27), Expect = 1e-04 Identities = 70/85 (82%) Strand = Plus / Plus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctct 122 |||||||| || || |||||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct: 2236 atcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaatgactgctcg 2295 Query: 123 gaaaggtcgtantatttcccatcca 147 | |||||| | ||||||||||||| Sbjct: 2296 ggaaggtcatcatatttcccatcca 2320
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 1e-04 Identities = 70/85 (82%) Strand = Plus / Plus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctct 122 |||||||| || || |||||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct: 27289779 atcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaatgactgctcg 27289838 Query: 123 gaaaggtcgtantatttcccatcca 147 | |||||| | ||||||||||||| Sbjct: 27289839 ggaaggtcatcatatttcccatcca 27289863
>dbj|AK061681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A03, full insert sequence Length = 1973 Score = 54.0 bits (27), Expect = 1e-04 Identities = 70/85 (82%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctct 122 |||||||| || || |||||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct: 1687 atcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaatgactgctcg 1628 Query: 123 gaaaggtcgtantatttcccatcca 147 | |||||| | ||||||||||||| Sbjct: 1627 ggaaggtcatcatatttcccatcca 1603
>dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA for mitochondrial F1-ATPase Length = 1929 Score = 54.0 bits (27), Expect = 1e-04 Identities = 70/85 (82%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgctct 122 |||||||| || || |||||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct: 1648 atcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaatgactgctcg 1589 Query: 123 gaaaggtcgtantatttcccatcca 147 | |||||| | ||||||||||||| Sbjct: 1588 ggaaggtcatcatatttcccatcca 1564
>gb|U96499.1|U96499 Nicotiana sylvestris ATPase beta subunit (nsatp2.3.1) gene, nuclear gene encoding mitochondrial protein, complete cds Length = 4384 Score = 52.0 bits (26), Expect = 5e-04 Identities = 72/88 (81%) Strand = Plus / Minus Query: 61 caatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgct 120 |||||||||| ||||| |||||||| | ||||| || ||||||||||| || | |||| Sbjct: 3308 caatcttctcagccttagcaatgacttcttctatacccccaaccatgtaaaacgattgct 3249 Query: 121 ctgaaaggtcgtantatttcccatccag 148 |||| ||||| | |||||||| ||||| Sbjct: 3248 ctgataggtcatcatatttcccgtccag 3221
>emb|X58498.1|HBATPB H.brasiliensis mRNA for mitochondrial ATP synthase beta-subunit Length = 2021 Score = 50.1 bits (25), Expect = 0.002 Identities = 71/87 (81%) Strand = Plus / Minus Query: 61 caatcttctctgccttggcaatgacctnctctattcctccaaccatgtagaatgcctgct 120 ||||||| || |||||||| || |||| || || |||||||||||||| |||| ||| | Sbjct: 1690 caatcttatcggccttggctatcacctcatcaatgcctccaaccatgtaaaatgactgtt 1631 Query: 121 ctgaaaggtcgtantatttcccatcca 147 ||| |||||| | ||||| ||||||| Sbjct: 1630 ctggaaggtcatcatattttccatcca 1604
>gb|AF419161.1|AF419161 Gillichthys mirabilis F1 ATP synthase beta subunit mRNA, partial cds Length = 649 Score = 46.1 bits (23), Expect = 0.029 Identities = 23/23 (100%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctc 121 ||||||||||||||||||||||| Sbjct: 516 ccaaccatgtagaatgcctgctc 494
>emb|CR734911.2|CNS0GTU6 Tetraodon nigroviridis full-length cDNA Length = 1680 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1517 ccaaccatgtagaaggcctgctctg 1493
>emb|CR730449.2|CNS0GQK6 Tetraodon nigroviridis full-length cDNA Length = 1675 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1512 ccaaccatgtagaaggcctgctctg 1488
>emb|CR729021.2|CNS0GPGJ Tetraodon nigroviridis full-length cDNA Length = 1685 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1522 ccaaccatgtagaaggcctgctctg 1498
>emb|CR722562.2|CNS0GKH4 Tetraodon nigroviridis full-length cDNA Length = 624 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 461 ccaaccatgtagaaggcctgctctg 437
>emb|CR703126.2|CNS0G5HE Tetraodon nigroviridis full-length cDNA Length = 1221 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1058 ccaaccatgtagaaggcctgctctg 1034
>emb|CR698947.2|CNS0G29B Tetraodon nigroviridis full-length cDNA Length = 905 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 742 ccaaccatgtagaaggcctgctctg 718
>emb|CR696789.2|CNS0G0LD Tetraodon nigroviridis full-length cDNA Length = 852 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 689 ccaaccatgtagaaggcctgctctg 665
>emb|CR694503.2|CNS0FYTV Tetraodon nigroviridis full-length cDNA Length = 1682 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1519 ccaaccatgtagaaggcctgctctg 1495
>emb|CR691590.2|CNS0FWKY Tetraodon nigroviridis full-length cDNA Length = 1231 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1068 ccaaccatgtagaaggcctgctctg 1044
>emb|CR690119.2|CNS0FVG3 Tetraodon nigroviridis full-length cDNA Length = 1338 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1199 ccaaccatgtagaaggcctgctctg 1175
>emb|CR689132.2|CNS0FUOO Tetraodon nigroviridis full-length cDNA Length = 1350 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1187 ccaaccatgtagaaggcctgctctg 1163
>emb|CR680456.2|CNS0FNZO Tetraodon nigroviridis full-length cDNA Length = 1262 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1124 ccaaccatgtagaaggcctgctctg 1100
>emb|CR680138.2|CNS0FNQU Tetraodon nigroviridis full-length cDNA Length = 1672 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1509 ccaaccatgtagaaggcctgctctg 1485
>emb|CR673940.2|CNS0FIZE Tetraodon nigroviridis full-length cDNA Length = 1199 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1036 ccaaccatgtagaaggcctgctctg 1012
>emb|CR672126.2|CNS0FHL0 Tetraodon nigroviridis full-length cDNA Length = 623 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 460 ccaaccatgtagaaggcctgctctg 436
>emb|CR670454.2|CNS0FGAK Tetraodon nigroviridis full-length cDNA Length = 1681 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1518 ccaaccatgtagaaggcctgctctg 1494
>emb|CR666515.2|CNS0FD95 Tetraodon nigroviridis full-length cDNA Length = 1221 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1058 ccaaccatgtagaaggcctgctctg 1034
>emb|CR659396.2|CNS0F7RE Tetraodon nigroviridis full-length cDNA Length = 1601 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1438 ccaaccatgtagaaggcctgctctg 1414
>emb|CR658808.2|CNS0F7B2 Tetraodon nigroviridis full-length cDNA Length = 1221 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1058 ccaaccatgtagaaggcctgctctg 1034
>emb|CR650139.2|CNS0F0M9 Tetraodon nigroviridis full-length cDNA Length = 1272 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1107 ccaaccatgtagaaggcctgctctg 1083
>emb|CR648745.2|CNS0EZJJ Tetraodon nigroviridis full-length cDNA Length = 1639 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1476 ccaaccatgtagaaggcctgctctg 1452
>emb|CR645891.2|CNS0EXC9 Tetraodon nigroviridis full-length cDNA Length = 1623 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1460 ccaaccatgtagaaggcctgctctg 1436
>emb|CR645267.2|CNS0EWUX Tetraodon nigroviridis full-length cDNA Length = 1236 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 1073 ccaaccatgtagaaggcctgctctg 1049
>emb|CR641909.2|CNS0EU9N Tetraodon nigroviridis full-length cDNA Length = 1044 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 881 ccaaccatgtagaaggcctgctctg 857
>emb|CR639100.2|CNS0ES3M Tetraodon nigroviridis full-length cDNA Length = 1045 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 882 ccaaccatgtagaaggcctgctctg 858
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 5054006 ccaaccatgtagaacgcctgctctg 5054030
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 ccaaccatgtagaatgcctgctctg 123 |||||||||||||| |||||||||| Sbjct: 2820495 ccaaccatgtagaaggcctgctctg 2820519
>ref|NM_147850.2| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT5G08680 mRNA, complete cds Length = 2027 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1722 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1676
>ref|NM_120953.2| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT5G08670 mRNA, complete cds Length = 1976 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1676 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1630
>ref|NM_120954.2| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT5G08690 mRNA, complete cds Length = 2007 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1675 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1629
>gb|BT000796.1| Arabidopsis thaliana unknown protein (At5g08670) mRNA, partial cds Length = 1596 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1319 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1273
>gb|AY117269.1| Arabidopsis thaliana unknown protein (At5g08670) mRNA, complete cds Length = 1702 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1649 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1603
>gb|AY113847.1| Arabidopsis thaliana unknown protein (At5g08690) mRNA, complete cds Length = 2023 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1675 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1629
>gb|AY080681.1| Arabidopsis thaliana unknown protein (At5g08670) mRNA, complete cds Length = 1968 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1665 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1619
>gb|AY079341.1| Arabidopsis thaliana unknown protein (At5g08690) mRNA, complete cds Length = 1702 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1649 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1603
>gb|AY050995.1| Arabidopsis thaliana unknown protein (At5g08690) mRNA, complete cds Length = 2001 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1675 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1629
>emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BAC clone T2K12 (ESSA project) Length = 82896 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 29785 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 29739 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 26116 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 26070 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Plus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 19872 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 19918
>emb|AJ271468.1|ATH271468 Arabidopsis thaliana mRNA for mitochondrial F1 ATP synthase beta subunit (p_beta gene) Length = 2533 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 2230 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 2184
>gb|DQ417168.1| Ictalurus punctatus clone SAAF04R ATP synthase beta-subunit-like mRNA, partial cds Length = 414 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 accatgtagaatgcctgctc 121 |||||||||||||||||||| Sbjct: 257 accatgtagaatgcctgctc 238
>gb|AY113178.1| Arabidopsis thaliana At5g08670/At5g08670 mRNA, complete cds Length = 1671 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1649 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1603
>gb|AC118002.2| Homo sapiens chromosome 11, clone RP11-258H15, complete sequence Length = 160686 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccaaccatgtagaatgcctgct 120 ||||||||||||| |||||||||| Sbjct: 49278 ctccaaccatgtaaaatgcctgct 49301
>gb|AC110056.5| Homo sapiens chromosome 11, clone CTD-2063L20, complete sequence Length = 74874 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ctccaaccatgtagaatgcctgct 120 ||||||||||||| |||||||||| Sbjct: 13168 ctccaaccatgtaaaatgcctgct 13145
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome Length = 1072950 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgtaaggagggagtttctt 42 |||||||||||||||||||| Sbjct: 989506 ttgtaaggagggagtttctt 989487
>gb|AY054222.1| Arabidopsis thaliana At5g08670 mRNA, complete cds Length = 1948 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1676 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1630
>dbj|AK221961.1| Arabidopsis thaliana mRNA for H+-transporting ATP synthase beta chain -like protein, complete cds, clone: RAFL22-54-B08 Length = 1206 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 921 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 875
>gb|AC090791.6| Homo sapiens chromosome 11, clone RP11-466I1, complete sequence Length = 172865 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccaaccatgtagaatgcctgct 120 ||||||||||||| |||||||||| Sbjct: 33035 ctccaaccatgtaaaatgcctgct 33058
>emb|BX833989.1|CNS09Z5M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL88ZG09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 678 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 406 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 360
>gb|BT005920.1| Arabidopsis thaliana At5g08680 gene, complete cds Length = 1680 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1658 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1612
>dbj|AK118582.1| Arabidopsis thaliana At5g08690 mRNA for putative H+-transporting ATP synthase beta chain (mitochondrial), complete cds, clone: RAFL19-82-J07 Length = 1917 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1675 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1629
>dbj|AK118538.1| Arabidopsis thaliana At5g08670 mRNA for putative H+-transporting ATP synthase beta chain (mitochondrial), complete cds, clone: RAFL19-76-L24 Length = 1940 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1675 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1629
>dbj|AK117922.1| Arabidopsis thaliana At5g08680 mRNA for putative H+-transporting ATP synthase beta chain (mitochondrial), complete cds, clone: RAFL19-10-P09 Length = 1960 Score = 40.1 bits (20), Expect = 1.8 Identities = 40/47 (85%) Strand = Plus / Minus Query: 63 atcttctctgccttggcaatgacctnctctattcctccaaccatgta 109 |||||||||||||| |||| |||| || || |||||||||||||| Sbjct: 1702 atcttctctgcctttgcaaccacctcatcgatacctccaaccatgta 1656
>emb|Y15178.1|SBY15178 Sorghum bicolor F1-ATP synthase, cultivar 2077A, partial Length = 1361 Score = 40.1 bits (20), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 99 ccaaccatgtagaatgcctgctctgaaaggtc 130 |||||||||||||||| ||| |||| |||||| Sbjct: 1361 ccaaccatgtagaatgactgttctggaaggtc 1330
>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete sequence Length = 193132 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 accatgtagaatgcctgctc 121 |||||||||||||||||||| Sbjct: 9707 accatgtagaatgcctgctc 9726
>dbj|AP003096.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2007L18, complete sequence Length = 174605 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 accatgtagaatgcctgctc 121 |||||||||||||||||||| Sbjct: 170444 accatgtagaatgcctgctc 170463
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccaaccatgtagaatgcctgctc 121 |||||||||||||| |||||||| Sbjct: 3820866 ccaaccatgtagaaggcctgctc 3820888
>gb|AC147033.2| Pan troglodytes BAC clone RP43-99I5 from 7, complete sequence Length = 188305 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 aatgcctgctctgaaaggt 129 ||||||||||||||||||| Sbjct: 49239 aatgcctgctctgaaaggt 49257
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccaaccatgtagaatgcctgctc 121 |||||||||||||| |||||||| Sbjct: 3785011 ccaaccatgtagaacgcctgctc 3785033
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 99 ccaaccatgtagaatgcctgctc 121 |||||||||||||| |||||||| Sbjct: 4998089 ccaaccatgtagaacgcctgctc 4998111
>emb|AL772346.5| Mouse DNA sequence from clone RP23-413E7 on chromosome 4, complete sequence Length = 189115 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 ttcctccaaccatgtagaa 112 ||||||||||||||||||| Sbjct: 182454 ttcctccaaccatgtagaa 182472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,003,561 Number of Sequences: 3902068 Number of extensions: 1003561 Number of successful extensions: 62233 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62040 Number of HSP's gapped (non-prelim): 193 length of query: 148 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 127 effective length of database: 17,151,101,840 effective search space: 2178189933680 effective search space used: 2178189933680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
