ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9b18 |
|---|---|
| Clone Library Name | barley_pub |
>MKRN4_HUMAN (Q13434) Makorin-4 (Zinc finger protein 127-Xp) (ZNF127-Xp) (RING| finger protein 64) Length = 485 Score = 30.4 bits (67), Expect(2) = 0.57 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -1 Query: 578 VLPNCTHAMCLRCYQDWNS 522 +L NC H CL+C + W S Sbjct: 336 ILSNCNHTFCLKCIRKWRS 354 Score = 21.9 bits (45), Expect(2) = 0.57 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = -3 Query: 636 VDAEREEECGICMEM 592 V +++ CGICME+ Sbjct: 308 VQRSKDKVCGICMEV 322
>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) Length = 982 Score = 32.7 bits (73), Expect = 1.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 398 PCGHLMCTSCLTSWQESDGQGCPFCRCEIKGTEP 431
>CBLB_MOUSE (Q3TTA7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) (Casitas B-lineage lymphoma proto-oncogene b) Length = 982 Score = 32.7 bits (73), Expect = 1.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 387 PCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 420
>CBLB_HUMAN (Q13191) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) (Casitas B-lineage lymphoma proto-oncogene b) (RING finger protein 56) Length = 982 Score = 32.7 bits (73), Expect = 1.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 387 PCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 420
>CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3.2.-) (Signal| transduction protein CBL-B-B) (SH3-binding protein CBL-B-B) Length = 764 Score = 32.7 bits (73), Expect = 1.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 400 PCGHLMCTSCLTSWQESDGQGCPFCRCEIKGTEP 433
>CBLB_RAT (Q8K4S7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) (Casitas B-lineage lymphoma proto-oncogene b) Length = 938 Score = 32.7 bits (73), Expect = 1.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 387 PCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 420
>YBR2_YEAST (P38239) RING finger protein YBR062C| Length = 180 Score = 28.5 bits (62), Expect(2) = 1.3 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -1 Query: 581 VVLPNCTHAMCLRCYQDWNSRVTVLPI 501 V LP+C H L C W SR T P+ Sbjct: 125 VELPHCHHKFDLECLSVWLSRSTTCPL 151 Score = 22.7 bits (47), Expect(2) = 1.3 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = -2 Query: 517 SQSCPFCRDNL 485 S +CP CRDN+ Sbjct: 146 STTCPLCRDNV 156
>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) Length = 913 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 393 PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 426
>CBL_HUMAN (P22681) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) (RING finger protein 55) Length = 906 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + T+P Sbjct: 395 PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 428
>MKRN1_HUMAN (Q9UHC7) Makorin-1 (RING finger protein 61)| Length = 482 Score = 30.0 bits (66), Expect(2) = 1.5 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -1 Query: 578 VLPNCTHAMCLRCYQDWNS 522 +L NC H CL+C + W S Sbjct: 301 ILSNCNHTYCLKCIRKWRS 319 Score = 20.8 bits (42), Expect(2) = 1.5 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -3 Query: 636 VDAEREEECGICMEM 592 V ++ CGICME+ Sbjct: 273 VQRSKDMVCGICMEV 287
>MKRN1_MACEU (Q9TT91) Makorin-1| Length = 478 Score = 30.0 bits (66), Expect(2) = 1.5 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -1 Query: 578 VLPNCTHAMCLRCYQDWNS 522 +L NC H CL+C + W S Sbjct: 297 ILSNCNHTYCLKCIRKWRS 315 Score = 20.8 bits (42), Expect(2) = 1.5 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -3 Query: 636 VDAEREEECGICMEM 592 V ++ CGICME+ Sbjct: 269 VQRSKDMVCGICMEV 283
>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1| Length = 1909 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = +3 Query: 498 QNGQDCDPRVPVLVASETHRM---CAVGQHNFCCSSPC 602 Q Q C +VP ++ H+ C++ + FCC PC Sbjct: 1332 QECQPCQVKVPKIILKCGHKQMVPCSMSESEFCCQEPC 1369
>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)| Length = 544 Score = 29.3 bits (64), Expect(2) = 2.5 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -2 Query: 577 CCPTAHMRCVS---DATRTGTRGSQSCPFCRDNLNKTDPGDLWI 455 C T +RC+ AT+ R S+SCP CR + P + W+ Sbjct: 371 CNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGFVIPSEFWV 414 Score = 20.8 bits (42), Expect(2) = 2.5 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -3 Query: 636 VDAEREEECGICMEM 592 V ++ CGICME+ Sbjct: 339 VQRSMDKVCGICMEV 353
>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein| 63) Length = 507 Score = 30.8 bits (68), Expect = 4.1 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -1 Query: 578 VLPNCTHAMCLRCYQDWNS 522 +L NC H+ C+RC + W S Sbjct: 331 ILSNCNHSFCIRCIRRWRS 349
>CBLBA_XENLA (Q6GQL0) E3 ubiquitin-protein ligase CBL-B-A (EC 6.3.2.-) (Signal| transduction protein CBL-B-A) (SH3-binding protein CBL-B-A) Length = 918 Score = 30.4 bits (67), Expect = 5.4 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = -2 Query: 571 PTAHMRCVSDATRTGTRGSQSCPFCRDNLNKTDP 470 P H+ C S T Q CPFCR + +P Sbjct: 398 PCGHLMCTSCLTSWQESDGQGCPFCRCEIKGMEP 431
>IBRD1_HUMAN (Q8TC41) IBR domain-containing protein 1| Length = 275 Score = 25.0 bits (53), Expect(2) = 5.7 Identities = 7/23 (30%), Positives = 11/23 (47%) Frame = -1 Query: 584 KVVLPNCTHAMCLRCYQDWNSRV 516 K+ P C C +C+ W+ V Sbjct: 80 KIQCPTCQFVWCFKCHSPWHEGV 102 Score = 23.9 bits (50), Expect(2) = 5.7 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = -2 Query: 529 GTRGSQSCPFCRDNLNKTDPGD 464 G R +Q CP C+ ++ +T+ D Sbjct: 124 GQRNAQKCPKCKIHIQRTEGCD 145
>MKRN1_MOUSE (Q9QXP6) Makorin-1| Length = 481 Score = 30.0 bits (66), Expect = 7.0 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -1 Query: 578 VLPNCTHAMCLRCYQDWNS 522 +L NC H CL+C + W S Sbjct: 301 ILSNCNHTYCLKCIRKWRS 319
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 30.0 bits (66), Expect = 7.0 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Frame = +3 Query: 498 QNGQDCDPRVPVLVASETHRM---CAVGQHNFCCSSPC 602 Q Q C +VP + H C+V + +FCC PC Sbjct: 1339 QECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPC 1376 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,540,867 Number of Sequences: 219361 Number of extensions: 1988104 Number of successful extensions: 4556 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4555 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
