Clone Information

BLAST Search Result

Clone Name	rbags8m05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL3_ORYSA (P35684) 60S ribosomal protein L3	322	7e-88
2	RL3B_ARATH (P22738) 60S ribosomal protein L3	302	6e-82
3	RL3A_ARATH (P17094) 60S ribosomal protein L3	296	2e-80
4	RL3_DROME (O16797) 60S ribosomal protein L3	236	4e-62
5	RL3_TOXCA (P49149) 60S ribosomal protein L3	229	4e-60
6	RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)	228	1e-59
7	RL3_ASHGO (Q759R7) 60S ribosomal protein L3	227	2e-59
8	RL3_RAT (P21531) 60S ribosomal protein L3 (L4)	226	3e-59
9	RL3_BOVIN (P39872) 60S ribosomal protein L3	226	3e-59
10	RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-bindi...	226	4e-59
11	RL3_CAEEL (P50880) 60S ribosomal protein L3	225	9e-59
12	RL3_DICDI (P34113) 60S ribosomal protein L3	222	8e-58
13	RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3	222	8e-58
14	RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3	221	2e-57
15	RL3_KLULA (Q6CJR7) 60S ribosomal protein L3	220	3e-57
16	RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like	219	4e-57
17	RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Mainten...	219	4e-57
18	RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3	218	1e-56
19	RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)	217	3e-56
20	RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like	216	4e-56
21	RL3B_SCHPO (P36584) 60S ribosomal protein L3-B	216	6e-56
22	RL3A_SCHPO (P40372) 60S ribosomal protein L3-A	216	6e-56
23	RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3	214	1e-55
24	RL3_NEUCR (P59671) 60S ribosomal protein L3	208	9e-54
25	RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3	201	1e-51
26	RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)	134	3e-31
27	RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P	124	2e-28
28	RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P	121	1e-27
29	RL3_PYRHO (O59418) 50S ribosomal protein L3P	121	2e-27
30	RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P	112	9e-25
31	RL3_METKA (Q8TY90) 50S ribosomal protein L3P	104	2e-22
32	RL3_METAC (Q8TRU7) 50S ribosomal protein L3P	103	4e-22
33	RL3_ARCFU (O28354) 50S ribosomal protein L3P	102	9e-22
34	RL3_METJA (P54014) 50S ribosomal protein L3P	101	2e-21
35	RL3_METMA (Q8PV50) 50S ribosomal protein L3P	100	4e-21
36	RL3_METTH (O26110) 50S ribosomal protein L3P	97	3e-20
37	RL3_METVA (Q9UWG2) 50S ribosomal protein L3P	97	4e-20
38	RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P	97	5e-20
39	RL3_THEVO (Q97BX7) 50S ribosomal protein L3P	90	6e-18
40	RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P	87	3e-17
41	RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P	85	2e-16
42	RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)	81	2e-15
43	RL3_NANEQ (P60458) 50S ribosomal protein L3P	79	1e-14
44	RL3_SULTO (Q975I1) 50S ribosomal protein L3P	77	5e-14
45	RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P	75	1e-13
46	RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P	72	1e-12
47	RL3_SULAC (Q4JB40) 50S ribosomal protein L3P	69	1e-11
48	RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase...	39	0.009
49	RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase...	39	0.009
50	RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase...	39	0.012
51	RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3	32	1.9
52	CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (...	31	2.5
53	IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)	31	3.3
54	IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)	31	3.3
55	RL3_MYCPU (Q98PY0) 50S ribosomal protein L3	31	3.3
56	PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)	30	4.3
57	ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor...	30	4.3
58	RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase...	30	4.3
59	HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG...	30	4.3
60	RL3_PORGI (Q7MTL3) 50S ribosomal protein L3	30	4.3
61	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	30	5.7
62	BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3...	30	5.7
63	PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)	30	7.4
64	FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal bo...	30	7.4
65	RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase...	30	7.4
66	LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A ...	29	9.7

>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  322 bits (824), Expect = 7e-88
 Identities = 153/160 (95%), Positives = 156/160 (97%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI
Sbjct: 228 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 287

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK GQE+H A TEFDRTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVVTLRQSLLK
Sbjct: 288 GKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLK 347

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           QTSRLALEEIKLKF+DTSSKFGHGRFQTTDEKQRF+GKLK
Sbjct: 348 QTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 387

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>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score =  302 bits (773), Expect = 6e-82
 Identities = 139/158 (87%), Positives = 150/158 (94%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY++
Sbjct: 228 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRV 287

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GKVGQETH A TE+DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLK
Sbjct: 288 GKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLK 347

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 143
           QTSRLA+EEIKLKF+D +S  GHGRFQT+ EK +FYG+
Sbjct: 348 QTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385

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>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score =  296 bits (759), Expect = 2e-80
 Identities = 137/159 (86%), Positives = 149/159 (93%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE+NKK+Y++
Sbjct: 228 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 287

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GKVG E H A TE+DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL 
Sbjct: 288 GKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLT 347

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 140
           QTSRLALEEIKLKF+DT+S FGHGRFQT+ EK RFY ++
Sbjct: 348 QTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386

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>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score =  236 bits (602), Expect = 4e-62
 Identities = 113/167 (67%), Positives = 133/167 (79%), Gaps = 7/167 (4%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y+I
Sbjct: 227 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRI 286

Query: 436 GKVGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVT 278
           G  G  T D       ASTE+D T+K ITPMGGFPHYG V  D++MIKGCC+G KKR++T
Sbjct: 287 G-AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIIT 345

Query: 277 LRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           LR+SLLK T R ALE+IKLKF+DTSSK GHGRFQT  +K  F G LK
Sbjct: 346 LRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392

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>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score =  229 bits (585), Expect = 4e-60
 Identities = 104/163 (63%), Positives = 131/163 (80%), Gaps = 3/163 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++
Sbjct: 227 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRL 286

Query: 436 GK---VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQS 266
           GK     +   +  T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+S
Sbjct: 287 GKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKS 346

Query: 265 LLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           L+ QT R A E+I LK++DTSSKFGHGRFQT  EK+ F GKLK
Sbjct: 347 LIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 389

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>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score =  228 bits (581), Expect = 1e-59
 Identities = 110/166 (66%), Positives = 135/166 (81%), Gaps = 6/166 (3%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           Y+GV +RW   +LPRKTHRGLRKVACIGAWHPARV++TVARAGQ GYHHRTE+NKK+YKI
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKI 286

Query: 436 G-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           G     K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TL
Sbjct: 287 GQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 347 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score =  227 bits (579), Expect = 2e-59
 Identities = 110/160 (68%), Positives = 127/160 (79%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           +EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY+I
Sbjct: 227 FEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRI 286

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK G E + A+TEFDRT+K ITPMGGF HYG V  D++M+KG   G +KRVVTLR+SL  
Sbjct: 287 GKGGDEGN-AATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYT 345

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
            TSR ALEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 346 STSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385

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>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score =  226 bits (577), Expect = 3e-59
 Identities = 109/166 (65%), Positives = 135/166 (81%), Gaps = 6/166 (3%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           Y+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKI
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 286

Query: 436 G-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           G     K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TL
Sbjct: 287 GQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 347 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score =  226 bits (577), Expect = 3e-59
 Identities = 109/166 (65%), Positives = 135/166 (81%), Gaps = 6/166 (3%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           Y+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKI
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 286

Query: 436 G-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           G     K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TL
Sbjct: 287 GQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 347 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 392

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>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score =  226 bits (576), Expect = 4e-59
 Identities = 109/166 (65%), Positives = 135/166 (81%), Gaps = 6/166 (3%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           Y+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKI
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 286

Query: 436 G-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           G     K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TL
Sbjct: 287 GQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 347 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score =  225 bits (573), Expect = 9e-59
 Identities = 103/163 (63%), Positives = 133/163 (81%), Gaps = 3/163 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+I
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287

Query: 436 GKVG---QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQS 266
           GK     +  ++ STEFD T+K ITPMGGFP YG+V  DY+M++G  +GPKKR++TLR+S
Sbjct: 288 GKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKS 347

Query: 265 LLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           L+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 348 LITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score =  222 bits (565), Expect = 8e-58
 Identities = 102/164 (62%), Positives = 127/164 (77%), Gaps = 4/164 (2%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           + GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y+I
Sbjct: 228 FNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRI 287

Query: 436 GKV----GQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 269
           G+     G++     TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+
Sbjct: 288 GQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRK 347

Query: 268 SLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           S+  QT R ALE+I LKF+DTSSKFGHG  QT ++K +++G  K
Sbjct: 348 SITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKK 391

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>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score =  222 bits (565), Expect = 8e-58
 Identities = 102/163 (62%), Positives = 132/163 (80%), Gaps = 3/163 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+I
Sbjct: 228 FKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRI 287

Query: 436 GKVG---QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQS 266
           GK     +  ++ STEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+S
Sbjct: 288 GKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKS 347

Query: 265 LLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           L+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 348 LITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score =  221 bits (562), Expect = 2e-57
 Identities = 108/166 (65%), Positives = 134/166 (80%), Gaps = 6/166 (3%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           Y+GV +RW   +LPRKTHRGLRKVACIGA HPARV+++VARAGQ GYHHRTE+NKK+YKI
Sbjct: 227 YKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKI 286

Query: 436 G-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           G     K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TL
Sbjct: 287 GQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 347 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score =  220 bits (560), Expect = 3e-57
 Identities = 104/160 (65%), Positives = 126/160 (78%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           +EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++
Sbjct: 226 FEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRV 285

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK G +  +A+TEFDRT+K ITPMGGF HYG +  D++++KG   G +KRVVTLR+SL  
Sbjct: 286 GK-GDDEANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYT 344

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
            TSR ALEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 345 NTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score =  219 bits (559), Expect = 4e-57
 Identities = 105/166 (63%), Positives = 127/166 (76%), Gaps = 7/166 (4%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y+IG
Sbjct: 228 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIG 287

Query: 433 KVGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           + G    D       AST +D T+K ITP+GGFPHYG V  D++M+KGC  G KKRV+TL
Sbjct: 288 R-GLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL   SR ALE I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 347 RKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score =  219 bits (559), Expect = 4e-57
 Identities = 102/160 (63%), Positives = 125/160 (78%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           +EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++
Sbjct: 225 FEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRV 284

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK G +  + +T FDRT+K ITPMGGF HYG +K D++M+KGC  G +KR+VTLR+SL  
Sbjct: 285 GK-GDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYT 343

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
            TSR ALEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 344 NTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 383

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>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score =  218 bits (555), Expect = 1e-56
 Identities = 104/160 (65%), Positives = 125/160 (78%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           +EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y+I
Sbjct: 226 FEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRI 285

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK G +  +A+T FDRT+K I PMGGF HYG+V  D++M+KG   G KKRVVTLR+SL  
Sbjct: 286 GK-GDDEGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYT 344

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
            TSR A+EE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 345 NTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384

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>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score =  217 bits (552), Expect = 3e-56
 Identities = 102/160 (63%), Positives = 128/160 (80%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV++I
Sbjct: 227 FQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRI 286

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK G +  +AST+FD ++K ITPMGGF  YG VK DY+M+KG   G KKRV+TLR++L  
Sbjct: 287 GK-GSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYP 345

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           QTSR A E+++LK++DTSSKFGHG FQT +EK+ F G LK
Sbjct: 346 QTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385

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>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score =  216 bits (550), Expect = 4e-56
 Identities = 103/166 (62%), Positives = 126/166 (75%), Gaps = 7/166 (4%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+++IG
Sbjct: 228 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIG 287

Query: 433 KVGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTL 275
           + G    D       AST +D T K ITP+GGFPHYG V  D++M+KGC  G KKRV+TL
Sbjct: 288 R-GPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITL 346

Query: 274 RQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           R+SLL   SR A+E I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 347 RKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score =  216 bits (549), Expect = 6e-56
 Identities = 103/159 (64%), Positives = 123/159 (77%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG
Sbjct: 226 EGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG 285

Query: 433 KVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQ 254
             G +  +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  
Sbjct: 286 -AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 344

Query: 253 TSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           TSR ALE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 345 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score =  216 bits (549), Expect = 6e-56
 Identities = 103/159 (64%), Positives = 123/159 (77%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG
Sbjct: 226 EGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG 285

Query: 433 KVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQ 254
             G +  +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  
Sbjct: 286 -AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 344

Query: 253 TSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           TSR ALE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 345 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score =  214 bits (546), Expect = 1e-55
 Identities = 102/160 (63%), Positives = 122/160 (76%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           +EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++
Sbjct: 226 FEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRV 285

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           G  G E+  A TEFDRT+K I PMGGF  YG VK D++++KG   G KKR+VT+R+SL  
Sbjct: 286 GSAGDESSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYV 344

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
            TSR A E + LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 345 DTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score =  208 bits (530), Expect = 9e-54
 Identities = 98/160 (61%), Positives = 123/160 (76%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           + GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y+I
Sbjct: 227 FTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRI 286

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           GK G     A+TE D T+K ITPMGGF  YG +  D++M+KG   G KKRV+TLR+S+  
Sbjct: 287 GK-GDAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFV 345

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
            TSR ALE+++LK++DTSS+FGHG FQT  EK++F G LK
Sbjct: 346 HTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385

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>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score =  201 bits (512), Expect = 1e-51
 Identities = 98/160 (61%), Positives = 124/160 (77%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++G V R+GV + PRK+ +G+RKVACIGAWHP+RV Y++ARAGQ G+H RTE NK+VY I
Sbjct: 222 FQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMI 281

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
              G  + +  TEFD TEK I+PMGGFPHYG V+ D++M+KG  VG +KRVVTLR+SLL+
Sbjct: 282 ---GNGSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLR 338

Query: 256 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 137
           Q    A EE+ +KFVDTSSK GHGRFQT+ EK+ FYG  K
Sbjct: 339 QR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARK 375

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>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)|
          Length = 130

 Score =  134 bits (336), Expect = 3e-31
 Identities = 62/106 (58%), Positives = 81/106 (76%), Gaps = 6/106 (5%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           Y+GV +RW   +LPRKTHRGLRKVACIGAWHPAR +++VARAGQ GYHHRTE+NKK+YKI
Sbjct: 25  YKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKI 84

Query: 436 G-----KVGQ-ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMI 317
           G     K G+   ++  T++D ++K I P+G F HYG V  D++M+
Sbjct: 85  GQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130

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>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P|
          Length = 365

 Score =  124 bits (311), Expect = 2e-28
 Identities = 59/139 (42%), Positives = 87/139 (62%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG
Sbjct: 231 QGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 290

Query: 433 KVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQ 254
           + G+   D +TE      +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++   
Sbjct: 291 ENGKLKLDENTEI-----EITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPP 345

Query: 253 TSRLALEEIKLKFVDTSSK 197
             +  ++  ++ +V   SK
Sbjct: 346 KKKPPVQRPQITYVSVESK 364

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>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P|
          Length = 361

 Score =  121 bits (304), Expect = 1e-27
 Identities = 58/139 (41%), Positives = 85/139 (61%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG
Sbjct: 228 QGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 287

Query: 433 KVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQ 254
           + G+         D  E +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++   
Sbjct: 288 ENGK------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPP 341

Query: 253 TSRLALEEIKLKFVDTSSK 197
             +  ++  ++ +V   SK
Sbjct: 342 KKKPPVQRPQITYVSVESK 360

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>RL3_PYRHO (O59418) 50S ribosomal protein L3P|
          Length = 362

 Score =  121 bits (303), Expect = 2e-27
 Identities = 58/139 (41%), Positives = 84/139 (60%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 434
           +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG
Sbjct: 229 QGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG 288

Query: 433 KVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQ 254
           + G+         D  E +ITP GGFPHYG+V+ D++MI G   G  KR++ +R ++   
Sbjct: 289 ENGK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPP 342

Query: 253 TSRLALEEIKLKFVDTSSK 197
             +  ++  ++ +V   SK
Sbjct: 343 KKKPPVQRPQITYVSVESK 361

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>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P|
          Length = 346

 Score =  112 bits (280), Expect = 9e-25
 Identities = 58/141 (41%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 440
           +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  
Sbjct: 211 QGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIA 270

Query: 439 IGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 260
           IG+ G+   D +      E +ITP GGFPHYG+V++D+LMI+G   G  KR++ +R ++ 
Sbjct: 271 IGENGKLVLDGN------EIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIR 324

Query: 259 KQTSRLALEEIKLKFVDTSSK 197
               +  +E  ++ +V   SK
Sbjct: 325 PPKKKPPVERPQITYVSRESK 345

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>RL3_METKA (Q8TY90) 50S ribosomal protein L3P|
          Length = 361

 Score =  104 bits (260), Expect = 2e-22
 Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ 
Sbjct: 213 FQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRIL 272

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           KIG+ G+E              +TP GGF +YGVV+ DY+MI G   GPKKR++ +R ++
Sbjct: 273 KIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318

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>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P|
          Length = 337

 Score =  103 bits (257), Expect = 4e-22
 Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 440
           +G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ K
Sbjct: 211 QGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILK 270

Query: 439 IGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 260
           IG  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  + 
Sbjct: 271 IGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI- 315

Query: 259 KQTSRLALEEIKLKFVDTSSKFG 191
            +  +  L E  + ++   SK G
Sbjct: 316 -RAKKADLGEPNILYISRESKQG 337

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>RL3_ARCFU (O28354) 50S ribosomal protein L3P|
          Length = 331

 Score =  102 bits (254), Expect = 9e-22
 Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ 
Sbjct: 203 FQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLI 262

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           KIG+ G+E              ITP GGF HYGV++  Y+++ G   GP KR++ +R ++
Sbjct: 263 KIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI 308

Query: 262 LKQTSRLALEEIKLKFVDTSSKFG 191
             +  +   + + + +V T+SK G
Sbjct: 309 --RPPKAHFDGVNIVYVSTTSKQG 330

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>RL3_METJA (P54014) 50S ribosomal protein L3P|
          Length = 335

 Score =  101 bits (252), Expect = 2e-21
 Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ 
Sbjct: 207 FQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRIL 266

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           KIG  G E              ITP GGF HYGV++ +Y+++KG   GP KR++ LR+++
Sbjct: 267 KIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAI 312

Query: 262 LKQTSRLALEEIKLKFVDTSSKFG 191
             Q   + + EI   ++ T+SK G
Sbjct: 313 RPQEPLIKVPEI--TYISTTSKQG 334

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>RL3_METMA (Q8PV50) 50S ribosomal protein L3P|
          Length = 337

 Score =  100 bits (248), Expect = 4e-21
 Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 440
           +G V RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ K
Sbjct: 211 QGPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILK 270

Query: 439 IGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 260
           IG  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  + 
Sbjct: 271 IGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI- 315

Query: 259 KQTSRLALEEIKLKFVDTSSKFG 191
            +  +  L E  + ++   SK G
Sbjct: 316 -RAKKADLGEPNILYISRESKQG 337

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>RL3_METTH (O26110) 50S ribosomal protein L3P|
          Length = 337

 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ 
Sbjct: 207 FQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQIL 266

Query: 442 KIGKVGQETHDASTEFDRTEKD-ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQS 266
           KIG             D +E D + P GGF  YG+V+ DY+MIKG   GP KR+V LR++
Sbjct: 267 KIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKA 313

Query: 265 LLKQTSRLALEEIKLKFVDTSSKFG 191
           +  + +    E  ++ ++ T+SK G
Sbjct: 314 I--RAAGKQEEAPQINYISTASKQG 336

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>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ 
Sbjct: 206 FQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRIL 265

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           K+G  G E              ITP GGF +YG VK  Y+++KG   GP KR+V LR ++
Sbjct: 266 KLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAV 311

Query: 262 LKQTSRLALEEIKLKFVDTSSKFGH 188
                +  L E+   ++   SK G+
Sbjct: 312 RPAEDKFGLPEV--TYISKESKQGN 334

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>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P|
          Length = 338

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 55/117 (47%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           Y+GV+ R+GVT LPR  K  +G R+   IG   PA V +T  R GQ G+H RTE NK++ 
Sbjct: 212 YQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLL 270

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 272
           KIG+ G E              ITP  GFPHYGVVK  Y++I+G   G +KR+V LR
Sbjct: 271 KIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313

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>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P|
          Length = 331

 Score = 89.7 bits (221), Expect = 6e-18
 Identities = 53/142 (37%), Positives = 74/142 (52%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           + G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N +V K 
Sbjct: 203 FTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKY 262

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
            K      DA T        I   GGF HYG+VK DY+++ G   GP KR++ +R    +
Sbjct: 263 SK----GEDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQ 310

Query: 256 QTSRLALEEIKLKFVDTSSKFG 191
           +     ++ +KL ++   SK G
Sbjct: 311 KVP--DIDNVKLDYISLESKQG 330

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>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P|
          Length = 331

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 52/142 (36%), Positives = 73/142 (51%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           + G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N +V K 
Sbjct: 203 FTGHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKY 262

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           G           E D     I   GGF HYG VK DY+++ G   G  KR++ +R    +
Sbjct: 263 GN--------KEEVD----SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQ 310

Query: 256 QTSRLALEEIKLKFVDTSSKFG 191
           +     +EE+KL+++   SK G
Sbjct: 311 KVP--DIEEVKLEYISLESKQG 330

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>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P|
          Length = 334

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 440
           +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  
Sbjct: 209 QGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLID 268

Query: 439 IGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 260
           I   G E               TP GGFP+YG V   Y ++KG   GP++R+V  R ++ 
Sbjct: 269 IND-GDEP--------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVR 313

Query: 259 KQTSRLALEEIKLKFVDTSSKFG 191
              S     E+  ++V T+S  G
Sbjct: 314 PNESPRLDPEV--RYVSTASNQG 334

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>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)|
          Length = 337

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
 Frame = -2

Query: 613 EGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 440
           +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  
Sbjct: 212 QGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLID 271

Query: 439 IGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           IG+  + T D               GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct: 272 IGEGDEPTVD---------------GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315

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>RL3_NANEQ (P60458) 50S ribosomal protein L3P|
          Length = 321

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 44/131 (33%), Positives = 69/131 (52%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 437
           ++GV+ R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + KI
Sbjct: 200 FQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKI 259

Query: 436 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 257
           G                 + +   GG+  YG V    +++KG   GP+KR++ LR+++  
Sbjct: 260 G-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRP 302

Query: 256 QTSRLALEEIK 224
              +  +E I+
Sbjct: 303 PRKQEKVEGIE 313

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>RL3_SULTO (Q975I1) 50S ribosomal protein L3P|
          Length = 343

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++GVV R+GV  LPR  K  +G RKV   G    +  SY V + GQ GYH RTE NK++ 
Sbjct: 218 FQGVVKRYGVVELPRWHKHRKGSRKVGARGPSF-STPSY-VPQPGQMGYHRRTEYNKRIL 275

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           KI     E              I P GGF +YG+V+  YL+I+G  +G KKR + LR  +
Sbjct: 276 KISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI 321

Query: 262 LKQTSRLALEEIKLKFVDTSSKFG 191
             + S +     K+ +V+  S+ G
Sbjct: 322 --RPSWIPQSAPKITYVNLYSQQG 343

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>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P|
          Length = 344

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++GV+ RWGV  LPR  K  +G R++      H     +   +AGQ G+H RTE NK++ 
Sbjct: 214 FQGVIKRWGVKELPRWHKHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRIL 271

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
            I   G +              +TP GGF  YGVV++ ++M+ G   G  KR + +R ++
Sbjct: 272 MIDDDGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAI 317

Query: 262 L--KQTSRLALEEIKLKFVDTSSKFG 191
              +   +L + + ++ ++  +SK G
Sbjct: 318 RPPEWYLKLGVRKPEITYISLASKQG 343

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>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P|
          Length = 351

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           + GV+ R+ V  LPR  K  +G RK+   G       SYT  + GQ G+H RTE NK++ 
Sbjct: 226 FAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRII 283

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 269
           KIG                 K+I P GGF  YG+V+  Y++++G  +G KKR + LR+
Sbjct: 284 KIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327

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>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P|
          Length = 342

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 443
           ++GV+ R+ V   PR  K  +G RK+   G    +  SY V + GQ G+H RTE NK++ 
Sbjct: 217 FQGVIKRYSVVEFPRWHKHRKGSRKIGARGP-SISTPSY-VPQPGQLGFHRRTEYNKRII 274

Query: 442 KIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 263
           KIG                  +I P GG  +YG+VK  YL+I+G  +G +KR + LR  +
Sbjct: 275 KIGD--------------NVNEINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPI 320

Query: 262 LKQTSRLALEEIKLKFVDTSSKFG 191
               S  +    K+ +V+ +S+ G
Sbjct: 321 RPSWSPESAP--KITYVNLASQQG 342

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>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +2

Query: 80  VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 235
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 236 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 409
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +2

Query: 80  VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 235
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 236 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 409
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
 Frame = +2

Query: 80  VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 235
           + H+ F   +++T+++LR+S  L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 236 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 409
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3|
          Length = 403

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 440
           ++G + RWG+   P R+T +  R++  +G+   AR+       G  GY  RT    ++ +
Sbjct: 235 FQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGYEWRTVSGLEIVR 294

Query: 439 I 437
           I
Sbjct: 295 I 295

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>CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (EC 4.6.1.1)|
           (ATP pyrophosphate-lyase) (Adenylyl cyclase) (Fragment)
          Length = 572

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 514 VSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ-----ETHDASTEFDRTEKDITPMGGFPH 350
           + Y     G + Y        +   +G  GQ     ET+ + +  +R++ D+TP+GG P 
Sbjct: 401 IRYDEVTKGYDYYGQTANTAARTESVGNGGQVLMTCETYHSLSTAERSQFDVTPLGGVPL 460

Query: 349 YGV 341
            GV
Sbjct: 461 RGV 463

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>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 125 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 274
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 125 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 274
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3|
          Length = 266

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 340 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 212
           VK + L++KG   GPKK  V +++   K  S+ A++ + L+ V
Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224

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>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1003

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 484 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 585
           +D+ E++ R P +++R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKESRRSGRATNHDSCDSCKEGG 66

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>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +2

Query: 179 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVRE 358
           E+  P     ++  E   L C  RG    G+      + WP+   +  +  G +H +   
Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729

Query: 359 ATHGSD 376
           A HG+D
Sbjct: 730 A-HGTD 734

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>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 366

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 101 KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 274
           ++ +++LR+S  L + ++P    ++     + P+L         D+ Q +T+G ++  + 
Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275

Query: 275 EGHHTLLWPDTASLDHQVVGLHHTIVR 355
           E    ++  D   LD Q      T++R
Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302

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>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 315

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 119 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 286
           LR  S L LA+ P L    L G ++T + KL  G    E D +   T GL + GLA  HH
Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183

Query: 287 TLLWP 301
            +L P
Sbjct: 184 EVLAP 188

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>RL3_PORGI (Q7MTL3) 50S ribosomal protein L3|
          Length = 205

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -2

Query: 616 YEGVVTRWGVTRLPRKTH---RGLRKVACIGAW-HPARVSYTVARAGQNGYHHRTEMNKK 449
           ++GVV R G   + + TH     LR    +GA  +PA+V      AGQ G    T  N +
Sbjct: 117 FQGVVKRHGFGGVGQATHGQHNRLRAPGAVGACSYPAKVFKGTRMAGQMGNERVTVQNLE 176

Query: 448 VYKI 437
           V K+
Sbjct: 177 VIKV 180

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +3

Query: 213  TNLSLISSSARREVCFSRDWRRVTTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 392
            T  +++S+++R +     DWR    R F  +QH                         V 
Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431

Query: 393  SNSVEASWVSCPTLPILYTFLFISV 467
              S+  SW +C TL +++ F+ +++
Sbjct: 1432 DGSIFGSWKACQTLALMHDFVILTL 1456

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>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +2

Query: 92   RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 256
            R+  +T+L    + +LE A++   L G L++   +L   +DK+E++ L  ET+GL
Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567

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>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 484 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 585
           +D+ E++ R P ++ R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGG 66

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>FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 231

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 482 ILTSPSNSVG--HPSRMPGTNTGNLAKTSVGLAGKAGDTPTCHNTF 613
           + +SPS S+     S+  G+     +KT +GL    G TP  +N F
Sbjct: 68  VTSSPSRSMSATSASKNAGSQIAKTSKTDIGLTSLFGSTPNTNNPF 113

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>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 338

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 80  VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 244
           +SH+ +     + +++LRS+   +  I  E    +       P++   + K   DF Q +
Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237

Query: 245 TRGLLQQGLAEGHHTLLWPDTASLDH 322
           + G + + +A+   TLL  D   LD+
Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263

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>LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A chain)|
          Length = 3084

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 421  ETHDASTEFDRTEKDITPMGGFPHYGVVK 335
            ET  A+++ +R EKD+  +GG PH   V+
Sbjct: 2426 ETPGAASDLNRLEKDLIYVGGLPHSKAVR 2454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,233,467
Number of Sequences: 219361
Number of extensions: 1948614
Number of successful extensions: 5937
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 5660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5874
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result