Clone Information

BLAST Search Result

Clone Name	rbags9b03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IMA1A_ORYSA (Q71VM4) Importin alpha-1a subunit	166	6e-41
2	IMA1B_ORYSA (Q9SLX0) Importin alpha-1b subunit	140	4e-33
3	IMA1_ARATH (Q96321) Importin alpha-1 subunit (Karyopherin alpha-...	139	1e-32
4	IMA_LYCES (O22478) Importin alpha subunit (Karyopherin alpha sub...	133	6e-31
5	IMA2_ARATH (O04294) Importin alpha-2 subunit (Karyopherin alpha-...	131	2e-30
6	IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha su...	87	4e-17
7	IMA7_MOUSE (O35345) Importin alpha-7 subunit (Karyopherin alpha-...	84	4e-16
8	IMA7_HUMAN (O60684) Importin alpha-7 subunit (Karyopherin alpha-6)	83	7e-16
9	IMA5_HUMAN (O15131) Importin alpha-6 subunit (Karyopherin alpha-...	80	4e-15
10	IMA1_RAT (P83953) Importin alpha-1 subunit (Karyopherin alpha-1 ...	80	6e-15
11	IMA1_MOUSE (Q60960) Importin alpha-1 subunit (Karyopherin alpha-...	80	6e-15
12	IMA1_HUMAN (P52294) Importin alpha-1 subunit (Karyopherin alpha-...	79	1e-14
13	IMA1_SCHPO (O14063) Importin alpha subunit (Karyopherin alpha su...	65	2e-10
14	IMA4_HUMAN (O00629) Importin alpha-4 subunit (Karyopherin alpha-...	60	5e-09
15	IMA4_MOUSE (O35343) Importin alpha-4 subunit (Karyopherin alpha-...	59	1e-08
16	IMA3_MOUSE (O35344) Importin alpha-3 subunit (Karyopherin alpha-...	58	3e-08
17	IMA3_HUMAN (O00505) Importin alpha-3 subunit (Karyopherin alpha-...	57	7e-08
18	IMA2_MOUSE (P52293) Importin alpha-2 subunit (Karyopherin alpha-...	54	3e-07
19	IMA2_HUMAN (P52292) Importin alpha-2 subunit (Karyopherin alpha-...	54	6e-07
20	IMA3_CAEEL (Q19969) Importin alpha-3 subunit (Karyopherin alpha-...	51	4e-06
21	IMA_DROME (P52295) Importin alpha subunit (Karyopherin alpha sub...	50	5e-06
22	IMA2_XENLA (P52171) Importin alpha-2 subunit (Karyopherin alpha-...	50	5e-06
23	IMA1_XENLA (P52170) Importin alpha-1 subunit (Karyopherin alpha-...	49	1e-05
24	FTSW_MESVI (Q9MUM4) Cell division protein ftsW homolog	35	0.21
25	PDXS_STRCO (Q9L286) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)	33	0.60
26	PDXS_STRAW (Q827U0) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)	32	1.3
27	UGL_BACGL (Q9RC92) Unsaturated glucuronyl hydrolase (EC 3.2.1.-)...	31	3.0
28	DPOE_KLULA (Q6CUS7) DNA polymerase epsilon, catalytic subunit A ...	31	3.0
29	TPM_PERVI (Q9GZ70) Tropomyosin	31	3.9
30	GLTS_SYNY3 (P55038) Ferredoxin-dependent glutamate synthase 2 (E...	31	3.9
31	SIAE_MOUSE (P70665) Sialate O-acetylesterase precursor (EC 3.1.1...	31	3.9
32	IMA2_CAEEL (P91276) Importin alpha-2 subunit (Karyopherin alpha-...	30	6.7
33	RPOB_LEGPN (O86094) DNA-directed RNA polymerase beta chain (EC 2...	30	8.7
34	RPOB_LEGPL (Q5WZL9) DNA-directed RNA polymerase beta chain (EC 2...	30	8.7
35	RPOB_LEGPH (Q5ZYQ0) DNA-directed RNA polymerase beta chain (EC 2...	30	8.7
36	RPOB_LEGPA (Q5X866) DNA-directed RNA polymerase beta chain (EC 2...	30	8.7
37	TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP transloca...	30	8.7
38	PMA1_DUNBI (P54211) Plasma membrane ATPase (EC 3.6.3.6) (Proton ...	30	8.7
39	PDX1_GINBI (Q9AT63) Pyridoxin biosynthesis protein PDX1 (Sor-lik...	30	8.7

>IMA1A_ORYSA (Q71VM4) Importin alpha-1a subunit|
          Length = 526

 Score =  166 bits (420), Expect = 6e-41
 Identities = 87/113 (76%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           VSEGCIK           RIVTVCLEGLENILKVGETDK L A+G+ NV++QMIDEAEGL
Sbjct: 409 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL-AAGDVNVFSQMIDEAEGL 467

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMG-TTMEAPTGVAFDFGQGG 341
           EKIENLQSHDNNEIYEKAVKILEAYWM+EEDD MG TT+ AP G  FDFGQGG
Sbjct: 468 EKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 520

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>IMA1B_ORYSA (Q9SLX0) Importin alpha-1b subunit|
          Length = 534

 Score =  140 bits (353), Expect = 4e-33
 Identities = 76/109 (69%), Positives = 86/109 (78%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V++GCIK          PRIVTVCLEGLENILKVGE +KNLGA G+ N YAQMID+AEGL
Sbjct: 415 VAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGA-GDVNSYAQMIDDAEGL 473

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFG 350
           EKIENLQSHDN EIYEKAVK+LE+YW+EEEDDAM +   A  G  F+FG
Sbjct: 474 EKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNG--FNFG 520

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>IMA1_ARATH (Q96321) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (KAP alpha)
          Length = 532

 Score =  139 bits (349), Expect = 1e-32
 Identities = 75/115 (65%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V +GCIK          PRI+TVCLEGLENILKVGE +KNLG +G+ N YAQ+ID+AEGL
Sbjct: 409 VEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGL 468

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAP--TGVAFDFGQGGN 338
           EKIENLQSHDNNEIYEKAVKILE YW+EEEDD    T + P   G    F  GGN
Sbjct: 469 EKIENLQSHDNNEIYEKAVKILETYWLEEEDD---ETQQPPGVDGSQAGFQFGGN 520

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>IMA_LYCES (O22478) Importin alpha subunit (Karyopherin alpha subunit) (KAP|
           alpha)
          Length = 527

 Score =  133 bits (334), Expect = 6e-31
 Identities = 73/118 (61%), Positives = 83/118 (70%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           VS+GCIK          PRIVTVCLEGLENILK+GE DK+LG +   NVYAQ+IDEAEGL
Sbjct: 410 VSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGL 469

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFGQGGNPDLNL 323
           EKIENLQSHDN EIYEKAVKILE YW+EEED         P  +  D  + G  D++L
Sbjct: 470 EKIENLQSHDNTEIYEKAVKILETYWLEEED--------VPVSLNEDQFEFGGADISL 519

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>IMA2_ARATH (O04294) Importin alpha-2 subunit (Karyopherin alpha-2 subunit)|
           (KAP alpha)
          Length = 531

 Score =  131 bits (330), Expect = 2e-30
 Identities = 67/114 (58%), Positives = 79/114 (69%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           VS+GCIK           ++VTVCLE LENIL VGE +KNLG +GE N+YAQMIDEAEGL
Sbjct: 412 VSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGL 471

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFGQGGNP 335
           EKIENLQSHDNN+IY+KAVKILE +W E+ ++       AP    F FG    P
Sbjct: 472 EKIENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQS-GFQFGSTNVP 524

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>IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha subunit)|
           (Serine-rich RNA polymerase I suppressor protein)
          Length = 542

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 53/118 (44%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEG-NVYAQMIDEAEG 500
           VS+GCIK           RI+ V L+ LENILK+GE DK   A G   N  A  I++A G
Sbjct: 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGG 482

Query: 499 LEKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFGQGGNPDLN 326
           +EKI N Q ++N++IYEKA KI+E Y+ EEED    T      G  F FG   N   N
Sbjct: 483 MEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTFGFGSNVNQQFN 540

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>IMA7_MOUSE (O35345) Importin alpha-7 subunit (Karyopherin alpha-6 subunit)|
           (Importin alpha S2)
          Length = 533

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 50/114 (43%), Positives = 64/114 (56%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           VS GCIK           +IV V L GLENIL++GE +     SG  N Y  +I+EA GL
Sbjct: 415 VSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKRSGSGV-NPYCGLIEEAYGL 473

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFGQGGNP 335
           +KIE LQSH+N EIY+KA  ++E Y+  E+DD+        T   F F Q   P
Sbjct: 474 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAP 527

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>IMA7_HUMAN (O60684) Importin alpha-7 subunit (Karyopherin alpha-6)|
          Length = 536

 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 50/114 (43%), Positives = 64/114 (56%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           VS GCIK           +IV V L GLENIL++GE +     SG  N Y  +I+EA GL
Sbjct: 418 VSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGV-NPYCGLIEEAYGL 476

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFGQGGNP 335
           +KIE LQSH+N EIY+KA  ++E Y+  E+DD+        T   F F Q   P
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAP 530

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>IMA5_HUMAN (O15131) Importin alpha-6 subunit (Karyopherin alpha-5 subunit)|
          Length = 536

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 44/92 (47%), Positives = 57/92 (61%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V+ GCIK           +IV V L GLENIL++GE +      G  N Y  +I+EA GL
Sbjct: 418 VALGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKQNGIGI-NPYCALIEEAYGL 476

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDD 401
           +KIE LQSH+N EIY+KA  ++E Y+  EEDD
Sbjct: 477 DKIEFLQSHENQEIYQKAFDLIEHYFGVEEDD 508

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>IMA1_RAT (P83953) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (Importin alpha 5)
          Length = 538

 Score = 80.1 bits (196), Expect = 6e-15
 Identities = 43/93 (46%), Positives = 58/93 (62%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V  GCIK           +IV V L GLENIL++GE +     SG  N Y  +I+EA GL
Sbjct: 420 VELGCIKPLCDLLTVMDAKIVQVALNGLENILRLGEQEAKRNGSGI-NPYCALIEEAYGL 478

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDA 398
           +KIE LQSH+N EIY+KA  ++E Y+  E++D+
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 511

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>IMA1_MOUSE (Q60960) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (SRP1-beta) (RAG cohort protein 2) (Nucleoprotein
           interactor 1) (Importin alpha S1)
          Length = 538

 Score = 80.1 bits (196), Expect = 6e-15
 Identities = 43/93 (46%), Positives = 58/93 (62%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V  GCIK           +IV V L GLENIL++GE +     SG  N Y  +I+EA GL
Sbjct: 420 VELGCIKPLCDLLTVMDAKIVQVALNGLENILRLGEQEAKRNGSGI-NPYCALIEEAYGL 478

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDA 398
           +KIE LQSH+N EIY+KA  ++E Y+  E++D+
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 511

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>IMA1_HUMAN (P52294) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (SRP1-beta) (RAG cohort protein 2) (Nucleoprotein
           interactor 1) (NPI-1)
          Length = 538

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 42/93 (45%), Positives = 58/93 (62%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V  GCIK           +IV V L GLENIL++GE +     +G  N Y  +I+EA GL
Sbjct: 420 VELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI-NPYCALIEEAYGL 478

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDA 398
           +KIE LQSH+N EIY+KA  ++E Y+  E++D+
Sbjct: 479 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 511

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>IMA1_SCHPO (O14063) Importin alpha subunit (Karyopherin alpha subunit)|
           (Serine-rich RNA polymerase I suppressor protein) (Cell
           untimely torn protein 15)
          Length = 542

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 39/114 (34%), Positives = 60/114 (52%)
 Frame = -1

Query: 676 VSEGCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGL 497
           V +G IK           +I+ V L+G+ENIL+VGE D+      + N+YA  +++A G+
Sbjct: 416 VEQGAIKPLCNLLACQDNKIIQVALDGIENILRVGELDR-ANNPDKINLYAVYVEDAGGM 474

Query: 496 EKIENLQSHDNNEIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAFDFGQGGNP 335
           + I   Q+  N+EIY+KA  I+E ++ EE  D +        G  F FG    P
Sbjct: 475 DLIHECQNSSNSEIYQKAYNIIEKFFGEE--DEIEELEPETVGDTFTFGTTQEP 526

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>IMA4_HUMAN (O00629) Importin alpha-4 subunit (Karyopherin alpha-4 subunit)|
           (Qip1 protein)
          Length = 521

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           ++V V L+GL NILK+ E         E      +I+E  GLEKIE LQ+H+N +IY+ A
Sbjct: 426 QVVQVVLDGLSNILKMAED--------EAETIGNLIEECGGLEKIEQLQNHENEDIYKLA 477

Query: 442 VKILEAYWMEEE-DDAMGTTMEAPTGVAFDFGQGGN 338
            +I++ ++  ++ D+      EA  G  F F    N
Sbjct: 478 YEIIDQFFSSDDIDEDPSLVPEAIQGGTFGFNSSAN 513

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>IMA4_MOUSE (O35343) Importin alpha-4 subunit (Karyopherin alpha-4 subunit)|
           (Importin alpha Q1)
          Length = 521

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           ++V V L+GL NILK+ E         +    A +I+E  GLEKIE LQ+H+N +IY+ A
Sbjct: 426 QVVQVVLDGLSNILKMAED--------QAETIANLIEECGGLEKIEQLQNHENEDIYKLA 477

Query: 442 VKILEAYWMEEE-DDAMGTTMEAPTGVAFDFGQGGN 338
            +I++ ++  ++ D+      E+  G  F F    N
Sbjct: 478 YEIIDQFFSSDDIDEDPSLVPESVQGGTFGFNSSTN 513

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>IMA3_MOUSE (O35344) Importin alpha-3 subunit (Karyopherin alpha-3 subunit)|
           (Importin alpha Q2)
          Length = 521

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           ++V V L+GL+NIL        + A  E +  A++I+E  GLEKIE LQ H+N +IY+ A
Sbjct: 426 QVVQVVLDGLKNIL--------IMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLA 477

Query: 442 VKILEAYWMEEE-DDAMGTTMEAPTGVAFDFGQGGN 338
            +I++ Y+  ++ D+      EA  G  ++F    N
Sbjct: 478 FEIIDQYFSGDDIDEDPSLIPEATQGGTYNFDPTAN 513

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>IMA3_HUMAN (O00505) Importin alpha-3 subunit (Karyopherin alpha-3 subunit)|
           (SRP1-gamma)
          Length = 521

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           ++V V L+GL+NIL        + A  E +  A++I+E  GLEKIE LQ H+N +IY+ A
Sbjct: 426 QVVQVVLDGLKNIL--------IMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLA 477

Query: 442 VKILEAYWMEEE-DDAMGTTMEAPTGVAFDFGQGGN 338
            +I++ Y+  ++ D+      EA  G  ++F    N
Sbjct: 478 FEIIDQYFSGDDIDEDPCLIPEATQGGTYNFDPTAN 513

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>IMA2_MOUSE (P52293) Importin alpha-2 subunit (Karyopherin alpha-2 subunit)|
           (SRP1-alpha) (RAG cohort protein 1) (Pendulin) (Pore
           targeting complex 58 kDa subunit) (PTAC58) (Importin
           alpha P1)
          Length = 529

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
 Frame = -1

Query: 667 GCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI 488
           G I+           +I+ V L+ + NI +  E        GE    + MI+E  GL+KI
Sbjct: 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK------LGETEKLSIMIEECGGLDKI 473

Query: 487 ENLQSHDNNEIYEKAVKILEAYW-MEEEDDAMGTTMEAPTGVAFDFGQGGNPDLN 326
           E LQ H+N  +Y+ ++ ++E Y+ +EEE+D          G AF    G     N
Sbjct: 474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFN 528

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>IMA2_HUMAN (P52292) Importin alpha-2 subunit (Karyopherin alpha-2 subunit)|
           (SRP1-alpha) (RAG cohort protein 1)
          Length = 529

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
 Frame = -1

Query: 667 GCIKXXXXXXXXXXPRIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI 488
           G I+           +I+ V L+ + NI +  E        GE    + MI+E  GL+KI
Sbjct: 420 GIIEPLMNLLTAKDTKIILVILDAISNIFQAAEK------LGETEKLSIMIEECGGLDKI 473

Query: 487 ENLQSHDNNEIYEKAVKILEAYW-MEEEDDAMGTTMEAPTGVAFDFGQGGNPDLN 326
           E LQ+H+N  +Y+ ++ ++E Y+ +EEE+D          G  F    G     N
Sbjct: 474 EALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAPGTFN 528

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>IMA3_CAEEL (Q19969) Importin alpha-3 subunit (Karyopherin alpha-3 subunit)|
          Length = 514

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKV-GETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEK 446
           +I+ V L+G+ NILK+ GE  + + +          I+E  GL+KIENLQ+H+N +IY+ 
Sbjct: 419 QIIQVVLDGINNILKMAGEAAEQVTSE---------IEECGGLDKIENLQNHENEDIYKL 469

Query: 445 AVKILEAYWMEEED 404
           A +I++ ++  +++
Sbjct: 470 AFEIIDNFFSSDDE 483

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>IMA_DROME (P52295) Importin alpha subunit (Karyopherin alpha subunit)|
           (Pendulin)
          Length = 522

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 28/75 (37%), Positives = 44/75 (58%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           R + V   GL N+  + E    LG  G  N+   M++E  GL+K+E LQ H+N E+Y+KA
Sbjct: 425 RTIKVVQTGLSNLFALAE---KLG--GTENL-CLMVEEMGGLDKLETLQQHENEEVYKKA 478

Query: 442 VKILEAYWMEEEDDA 398
             I++ Y+   +D+A
Sbjct: 479 YAIIDTYFSNGDDEA 493

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>IMA2_XENLA (P52171) Importin alpha-2 subunit (Karyopherin alpha-2 subunit)|
          Length = 522

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/76 (35%), Positives = 40/76 (52%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           + + V L+ + NI    E        GE      +++E  GLEKIE LQ+HDN  +Y  A
Sbjct: 427 KTILVILDAISNIFLAAEK------LGEQEKLCLLVEELGGLEKIEALQTHDNRMVYHAA 480

Query: 442 VKILEAYWMEEEDDAM 395
           + ++E Y+  EE D M
Sbjct: 481 LALIEKYFSGEEADEM 496

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>IMA1_XENLA (P52170) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
          Length = 521

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 26/74 (35%), Positives = 40/74 (54%)
 Frame = -1

Query: 622 RIVTVCLEGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKA 443
           + + V L+ + NI    E        GE      +++E  GLEKIE LQ+HDN+ +Y  A
Sbjct: 427 KTILVILDAISNIFLAAEK------LGEQEKLCLLVEELGGLEKIEALQTHDNHMVYHAA 480

Query: 442 VKILEAYWMEEEDD 401
           + ++E Y+  EE D
Sbjct: 481 LALIEKYFSGEEAD 494

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>FTSW_MESVI (Q9MUM4) Cell division protein ftsW homolog|
          Length = 415

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 32/104 (30%), Positives = 46/104 (44%)
 Frame = +2

Query: 302 WSNLYSAQVQIRVATLAKVKGNTCGSFHSCPHRIIFLLHPVSLKNLHSLLIDFIVIMALQ 481
           W+N  S   Q+  + LA   G   GS  SC ++ +F L P+          DFI  +  +
Sbjct: 249 WANPTSIGYQLVQSLLAVGSGRLTGSGISCSYQKLFYL-PIQ-------YTDFIFSVFSE 300

Query: 482 VLNLFQAFCFINHLCIDISLPRSTQILISLSNFENVLKTLQANC 613
              L  AF FI+ L I  SL     +++ LSN   V + L   C
Sbjct: 301 EFGLLGAFLFISLLIIYFSL----GMIVVLSNKSKVNRLLALGC 340

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>PDXS_STRCO (Q9L286) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 303

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -1

Query: 601 EGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 422
           E L  I +     ++ G +G GNV   +    +   +I  L+ +DNNE+Y  A ++   Y
Sbjct: 143 EALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPY 202

Query: 421 WMEEEDDAMG 392
            + +E   +G
Sbjct: 203 ELVKEVSELG 212

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>PDXS_STRAW (Q827U0) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 304

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -1

Query: 601 EGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 422
           E L  I +     ++ G +G GNV   +    +   +I  L+ +DNNE+Y  A ++   Y
Sbjct: 144 EALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPY 203

Query: 421 WMEEEDDAMG 392
            + +E   +G
Sbjct: 204 EIVKEVAELG 213

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>UGL_BACGL (Q9RC92) Unsaturated glucuronyl hydrolase (EC 3.2.1.-) (UGL)|
           (Glycuronidase) (Unsaturated uronic acid hydrolase)
           (Glycosaminoglycan hydrolase)
          Length = 377

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
 Frame = -1

Query: 505 EGLEKIENLQSHDNNEIYEKAVKILEAYWMEEED-----------DAMGTTMEAPTGVAF 359
           E L++ ENL  HD   +Y  + K   A W+ E+D           D +     A  G+  
Sbjct: 76  ERLDRFENLDHHDIGFLYSLSAK---AQWIVEKDESARKLALDAADVLMRRWRADAGIIQ 132

Query: 358 DFGQGGNPDLNLG*IQI*PMVAIPLSL 278
            +G  G+P+ N G I I  ++ +PL L
Sbjct: 133 AWGPKGDPE-NGGRIIIDCLLNLPLLL 158

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>DPOE_KLULA (Q6CUS7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2185

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -1

Query: 520  MIDEAEGLEKIENLQSHDNN------EIYEKAVKILEAYWMEEEDDAMGTTMEAPTGVAF 359
            M++EAEG +  +N  S + +           A+ +L A   E  DDA+G  + A + V  
Sbjct: 1719 MLNEAEGTDLAQNSTSKEESFGFVEDSFSSSALSVLRALLKELWDDALGDNITADSLVHA 1778

Query: 358  DFGQGGNPDLNL 323
              G   NPD  L
Sbjct: 1779 FIGWVYNPDAKL 1790

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>TPM_PERVI (Q9GZ70) Tropomyosin|
          Length = 284

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -1

Query: 592 ENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI-ENLQSHDNNEIYEKAVKILEAYWM 416
           E I+K  E  +   ASG+    ++  DE+E   K+ ENL S ++  I +   ++ EA W+
Sbjct: 97  EGIMKAEE--RFTTASGKLEEASKAADESERNRKVLENLNSGNDERIDQLEKQLTEAKWI 154

Query: 415 EEEDD 401
            EE D
Sbjct: 155 AEEAD 159

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>GLTS_SYNY3 (P55038) Ferredoxin-dependent glutamate synthase 2 (EC 1.4.7.1)|
            (FD-GOGAT)
          Length = 1556

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 181  GIKYHSDCKRSIIVELEESGFFSIRLLCRGCIFSMVC 71
            G+K   D   + ++  EE GF SI ++  GCI + VC
Sbjct: 1143 GLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVC 1179

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>SIAE_MOUSE (P70665) Sialate O-acetylesterase precursor (EC 3.1.1.53) (Sialic|
           acid-specific 9-O-acetylesterase) (Yolk sac protein 2)
           [Contains: Sialate O-acetylesterase small subunit;
           Sialate O-acetylesterase large subunit]
          Length = 541

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 475 SAGSQSFPGLLLHQSSVHRHFPPQKHPNSYQSLQL*ECSQDPP 603
           ++    FP +  HQ++   H P  K PN++ ++ +  C +D P
Sbjct: 356 NSSDYGFPEIRWHQTADFGHVPNPKMPNTFMAVAIDLCDRDSP 398

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>IMA2_CAEEL (P91276) Importin alpha-2 subunit (Karyopherin alpha-2 subunit)|
          Length = 531

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 10/43 (23%), Positives = 26/43 (60%)
 Frame = -1

Query: 535 NVYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMEEE 407
           ++    ++E  GL+ +E LQ   + +IY +A +I+  ++ +++
Sbjct: 470 DILHDQVEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDD 512

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>RPOB_LEGPN (O86094) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1368

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 589  NILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI----ENLQSHD 467
            NI +V ET   L A G G   AQM+DE +  E I    E + +HD
Sbjct: 1136 NIGQVLETHLGLAAKGLGRKIAQMLDERQTPEAIKAYLEKIYNHD 1180

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>RPOB_LEGPL (Q5WZL9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1368

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 589  NILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI----ENLQSHD 467
            NI +V ET   L A G G   AQM+DE +  E I    E + +HD
Sbjct: 1136 NIGQVLETHLGLAAKGLGRKIAQMLDEKQTPEAIKAYLEKIYNHD 1180

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>RPOB_LEGPH (Q5ZYQ0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1368

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 589  NILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI----ENLQSHD 467
            NI +V ET   L A G G   AQM+DE +  E I    E + +HD
Sbjct: 1136 NIGQVLETHLGLAAKGLGRKIAQMLDEKQTPEAIKAYLEKIYNHD 1180

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>RPOB_LEGPA (Q5X866) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1368

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 589  NILKVGETDKNLGASGEGNVYAQMIDEAEGLEKI----ENLQSHD 467
            NI +V ET   L A G G   AQM+DE +  E I    E + +HD
Sbjct: 1136 NIGQVLETHLGLAAKGLGRKIAQMLDERQTPEAIKAYLEKIYNHD 1180

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>TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP translocase 2)|
          Length = 540

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 407 FLLHPVSLKNLHSLLIDFIVIMALQVLNLFQAFCFINHLCIDISLPRSTQIL 562
           F+ +  +  + HS++++  +++    L +   +  I+HL ID S+P S ++L
Sbjct: 211 FVAYSFACDSWHSVMLNLTMLITCSGLIMIWLYRRIHHLTIDTSIPPSRRVL 262

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>PMA1_DUNBI (P54211) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)|
          Length = 1131

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 580 KVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKAV 440
           K+G+T     +  E N YA+  DE EG +K   +Q  D   ++ + V
Sbjct: 791 KLGQTIDPYASLCESNSYAKQFDECEGYQKGSGVQVEDVPTLHAQCV 837

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>PDX1_GINBI (Q9AT63) Pyridoxin biosynthesis protein PDX1 (Sor-like protein)|
          Length = 309

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -1

Query: 601 EGLENILKVGETDKNLGASGEGNVYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 422
           E L  I +     +  G +G GNV   +      L  I  LQS D++E++  A +I   Y
Sbjct: 150 EALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPY 209

Query: 421 WMEEEDDAMG 392
            +  +   +G
Sbjct: 210 ELVRQTKQLG 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,440,183
Number of Sequences: 219361
Number of extensions: 2108386
Number of successful extensions: 6221
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6203
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result