>ADAM8_MOUSE (Q05910) ADAM 8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 8) (Cell surface antigen MS2)
           (Macrophage cysteine-rich glycoprotein) (CD156 antigen)
          Length = 826

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
 Frame = +3

Query: 63  QDHSKLGS----------MVNTEIPYIKQQSYTMLYV*LITWHLDRAY--------KHNF 188
           Q+  KLGS          +VN      ++ S+ ++ V L  W+ D+ Y          NF
Sbjct: 207 QEFQKLGSREAVRQRVLEVVNHVDKLYQELSFRVVLVGLEIWNKDKFYISRYANVTLENF 266

Query: 189 LVWQRKHPSRSNMERRHPHTNSQLRRHLVIILASELSITKIIGLC 323
           L W+ +     N++ +HPH N QL    V  + S + + K+  LC
Sbjct: 267 LSWREQ-----NLQGQHPHDNVQLITG-VDFIGSTVGLAKVSALC 305

>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B|
            precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 252  CSCGDGASPCSSVMDVSAAKQGSCACRH 169
            C+  DG  PCS +  ++  +  +CAC H
Sbjct: 1531 CAANDGKGPCSHMCLINHNRSAACACPH 1558

>JHD3A_MOUSE (Q8BW72) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 158 APRSCLQAQLPCLAAETSITLEHGEAPSPHEQPIETTPSHH 280
           APRS  + +L  +A E  ++LE  +      QP+   P HH
Sbjct: 567 APRSISEQELAEVADEYMLSLEENKKTKGRRQPLSKLPRHH 607

>BRN3_CHICK (Q91998) Brain-specific homeobox/POU domain protein 3 (Brn-3)|
          Length = 341

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 536 LQKHLPVSGPE---GPNELEKIAVRFEEKIYNAATSQSD 429
           L  H  +SGPE    P ELE  A RF+++      +Q+D
Sbjct: 172 LASHAVISGPETETDPRELESFAERFKQRRIKLGVTQAD 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,409,096
Number of Sequences: 219361
Number of extensions: 1762393
Number of successful extensions: 5040
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5039
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)