>LRRK2_HUMAN (Q5S007) Leucine-rich repeat serine/threonine-protein kinase 2 (EC|
           2.7.11.1) (Dardarin)
          Length = 2527

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +2

Query: 233 FEKLLVPNQLHEEIVSAVQYDPPR*PIQLASLPI*LALVTELHF 364
           F  +LV N++HE +V AVQ  P    +Q+++L   LAL+TE  F
Sbjct: 282 FFNILVLNEVHEFVVKAVQQYPENAALQISALSC-LALLTETIF 324

>Y3178_CAUCR (P58114) Hypothetical protein CC3178|
          Length = 288

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 583 AFKYFGPFQILEKIGPAAYKLDLPAEAQIHPVP 485
           A +  GPF  L+ +GPAA++   P  A + P P
Sbjct: 26  AHRMVGPFTFLDHMGPAAFQPGFPKSADVRPHP 58

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 574  YFGPFQILEKIGPAAYKLDLP 512
            + GPF +L+K GP  Y+LDLP
Sbjct: 1218 FAGPFYVLQKSGPNNYELDLP 1238

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 574  YFGPFQILEKIGPAAYKLDLP 512
            + GPF +L+K GP  Y+LDLP
Sbjct: 1218 FAGPFYVLQKSGPNNYELDLP 1238

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 574  YFGPFQILEKIGPAAYKLDLP 512
            + GPF +L+K GP  Y+LDLP
Sbjct: 1218 FAGPFYVLQKSGPNNYELDLP 1238

>Y2042_SYNY3 (P73079) Hypothetical protein slr2042|
          Length = 275

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 347 QVLVRWGDLPAELATWED-HTALQKRFPHAADWGQAA 240
           Q+++ WG +  +L  W+D H  +   F H  D G  A
Sbjct: 151 QLILAWGTIAWDLERWQDGHNVIFHEFAHQLDMGDGA 187

>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen
           240 kDa protein) (Mi2-alpha) (Zinc-finger helicase)
           (hZFH)
          Length = 2000

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 LSKKGNAALLQVLVRWGDLPAELATWED 294
           + KKGN      LV+W DLP + +TWE+
Sbjct: 641 VDKKGN---YHYLVKWRDLPYDQSTWEE 665

>HDAC7_HUMAN (Q8WUI4) Histone deacetylase 7a (HD7a)|
          Length = 952

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 20  RCRTATGMRAHILLYSHTPLTLTHGPQPDKAHTQPT 127
           R     G R  IL   HTPL L HG +P+   T P+
Sbjct: 269 RTHPTLGPRGPILGSPHTPLFLPHGLEPEAGGTLPS 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,942,923
Number of Sequences: 219361
Number of extensions: 1968868
Number of successful extensions: 4593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4589
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)