ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9a22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
3emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116... 50 0.008
4ref|XM_381856.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 44 0.51
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
6dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
7dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
8gb|DQ125487.1| Toxoplasma gondii structural maintenance of chrom... 42 2.0
9emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in... 42 2.0
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
12dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
13dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
14dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
15dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
16gb|DQ219841.1| Tetrahymena thermophila Apm1Ap (APM1A) gene, comp... 42 2.0
17ref|NM_024256.2| Mus musculus beta-1,3-glucuronyltransferase 3 (... 40 8.0
18gb|AE000660.1|HUAE000660 Homo sapiens T-cell receptor alpha delt... 40 8.0
19gb|BC004038.1| Mus musculus beta-1,3-glucuronyltransferase 3 (gl... 40 8.0
20gb|BC012930.1| Mus musculus beta-1,3-glucuronyltransferase 3 (gl... 40 8.0
21gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, com... 40 8.0
22gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, co... 40 8.0
23emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20... 40 8.0
24gb|AC130819.4| Mus musculus BAC clone RP23-118O2 from chromosome... 40 8.0
25gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosom... 40 8.0
26gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, com... 40 8.0
27emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M1... 40 8.0
28gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, ... 40 8.0
29ref|NM_001000504.1| Rattus norvegicus olfactory receptor 37 (Olr... 40 8.0
30ref|NM_001000935.1| Rattus norvegicus olfactory receptor 36 (pre... 40 8.0
31gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, comple... 40 8.0
32dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 8.0
33dbj|AK144402.1| Mus musculus 8 days neonate male testis cDNA, RI... 40 8.0
34dbj|AK146264.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 40 8.0
35gb|AE009869.1|AE009869 Pyrobaculum aerophilum strain IM2 section... 40 8.0
36gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete seq... 40 8.0
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
38gb|BC002103.1| Mus musculus beta-1,3-glucuronyltransferase 3 (gl... 40 8.0
39emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 m... 40 8.0
40gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 8.0
41emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4,... 40 8.0
42ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 8.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 550      ccaagatctgaaaggggccaaaata 574
                |||||||||||||||||||||||||
Sbjct: 20173796 ccaagatctgaaaggggccaaaata 20173772
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 550      ccaagatctgaaaggggccaaaata 574
                |||||||||||||||||||||||||
Sbjct: 20100010 ccaagatctgaaaggggccaaaata 20099986
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>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152862

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 550   ccaagatctgaaaggggccaaaata 574
             |||||||||||||||||||||||||
Sbjct: 38030 ccaagatctgaaaggggccaaaata 38006
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>ref|XM_381856.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01680.1)
            partial mRNA
          Length = 4950

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 549  tccaagatctgaaaggggccaa 570
            ||||||||||||||||||||||
Sbjct: 2534 tccaagatctgaaaggggccaa 2555
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 297     ctcccaggtagccaattcagctggca 322
               |||||||||||||||||||| |||||
Sbjct: 6916712 ctcccaggtagccaattcagttggca 6916737



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 420     ccattgtcagtggtttgggga 440
               |||||||||||||||||||||
Sbjct: 3952069 ccattgtcagtggtttgggga 3952049
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>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0668C05
          Length = 142081

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 297   ctcccaggtagccaattcagctggca 322
             |||||||||||||||||||| |||||
Sbjct: 40527 ctcccaggtagccaattcagttggca 40552
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>dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_B03
          Length = 108992

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 297   ctcccaggtagccaattcagctggca 322
             |||||||||||||||||||| |||||
Sbjct: 72967 ctcccaggtagccaattcagttggca 72992
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>gb|DQ125487.1| Toxoplasma gondii structural maintenance of chromosome 4 (SMC4) gene,
            complete cds
          Length = 15840

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 152  ttctcctgtcttcttcatctt 172
            |||||||||||||||||||||
Sbjct: 7443 ttctcctgtcttcttcatctt 7423
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>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7, complete
              sequence
          Length = 194826

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 343    acttgtaacagagctgcattt 363
              |||||||||||||||||||||
Sbjct: 167828 acttgtaacagagctgcattt 167848
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 545     cttctccaagatctgaaaggggccaaaatatttgaaggcca 585
               |||||||| ||| ||||| || |||||||||||||| ||||
Sbjct: 1297812 cttctccaggatttgaaatggtccaaaatatttgaaagcca 1297852
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 550      ccaagatctgaaaggggccaaaata 574
                |||||||||||||||| ||||||||
Sbjct: 12883304 ccaagatctgaaagggaccaaaata 12883328
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496D04
          Length = 197358

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    ccattgtcagtggtttgggga 440
              |||||||||||||||||||||
Sbjct: 191181 ccattgtcagtggtttgggga 191161
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>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0073J19
          Length = 165174

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 545    cttctccaagatctgaaaggggccaaaatatttgaaggcca 585
              |||||||| ||| ||||| || |||||||||||||| ||||
Sbjct: 127119 cttctccaggatttgaaatggtccaaaatatttgaaagcca 127159
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>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1140D12
          Length = 139301

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 550   ccaagatctgaaaggggccaaaata 574
             |||||||||||||||| ||||||||
Sbjct: 34745 ccaagatctgaaagggaccaaaata 34769
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>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1656_E11
          Length = 116211

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   ccattgtcagtggtttgggga 440
             |||||||||||||||||||||
Sbjct: 54795 ccattgtcagtggtttgggga 54775
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>gb|DQ219841.1| Tetrahymena thermophila Apm1Ap (APM1A) gene, complete cds
          Length = 2187

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 422 attgtcagtggtttggggata 442
           |||||||||||||||||||||
Sbjct: 498 attgtcagtggtttggggata 478
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>ref|NM_024256.2| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I) (B3gat3), mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gagaagctgcttgtccccaa 255
            ||||||||||||||||||||
Sbjct: 1395 gagaagctgcttgtccccaa 1376
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>gb|AE000660.1|HUAE000660 Homo sapiens T-cell receptor alpha delta locus from bases 501613 to
           752736 (section 3 of 5) of the Complete Nucleotide
           Sequence
          Length = 251124

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 147 ctctgttctcctgtcttcttcatctttc 174
           |||||||||||||||||| |||||||||
Sbjct: 177 ctctgttctcctgtcttc-tcatctttc 203
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>gb|BC004038.1| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), mRNA (cDNA clone MGC:7663
            IMAGE:3496170), complete cds
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gagaagctgcttgtccccaa 255
            ||||||||||||||||||||
Sbjct: 1395 gagaagctgcttgtccccaa 1376
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>gb|BC012930.1| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), mRNA (cDNA clone MGC:21378
            IMAGE:4500993), complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gagaagctgcttgtccccaa 255
            ||||||||||||||||||||
Sbjct: 1384 gagaagctgcttgtccccaa 1365
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>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence
          Length = 178077

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 134    ccacacttagccactctgttctcc 157
              ||||||||| ||||||||||||||
Sbjct: 116856 ccacacttacccactctgttctcc 116879
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>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence
          Length = 186195

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   ctgaagactggagtatggtc 465
             ||||||||||||||||||||
Sbjct: 62172 ctgaagactggagtatggtc 62191
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>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and
              01G10 from library NotreDame1 of Anopheles gambiae (African
              malaria mosquito) strain PEST
          Length = 447895

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    ccaatcttctccaagatctg 559
              ||||||||||||||||||||
Sbjct: 262026 ccaatcttctccaagatctg 262007
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>gb|AC130819.4| Mus musculus BAC clone RP23-118O2 from chromosome 19, complete sequence
          Length = 223575

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    gagaagctgcttgtccccaa 255
              ||||||||||||||||||||
Sbjct: 212422 gagaagctgcttgtccccaa 212441
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>gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosome 19, complete sequence
          Length = 175796

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    gagaagctgcttgtccccaa 255
              ||||||||||||||||||||
Sbjct: 159846 gagaagctgcttgtccccaa 159827
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>gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, complete sequence
          Length = 177868

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 134  ccacacttagccactctgttctcc 157
            ||||||||| ||||||||||||||
Sbjct: 7612 ccacacttacccactctgttctcc 7589
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>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12
              Contains the PPIAL gene for peptidylprolyl isomerase A
              (cyclophilin A)-like pseudogene, the 5' end of the PTPRT
              gene for protein tyrosine phosphatase receptor type T, a
              novel gene and two CpG Islands, complete sequence
          Length = 177562

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 404    tgtaaatcttcagtgtccat 423
              ||||||||||||||||||||
Sbjct: 106103 tgtaaatcttcagtgtccat 106122
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>gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, RP23-49P8 Complete
             Sequence, complete sequence
          Length = 220143

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   gagaagctgcttgtccccaa 255
             ||||||||||||||||||||
Sbjct: 70141 gagaagctgcttgtccccaa 70160
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>ref|NM_001000504.1| Rattus norvegicus olfactory receptor 37 (Olr37), mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 tcctgtcttcttcatctttc 174
           ||||||||||||||||||||
Sbjct: 90  tcctgtcttcttcatctttc 109
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>ref|NM_001000935.1| Rattus norvegicus olfactory receptor 36 (predicted)
           (Olr36_predicted), mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 tcctgtcttcttcatctttc 174
           ||||||||||||||||||||
Sbjct: 90  tcctgtcttcttcatctttc 109
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>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tttacctggctctgcagcac 195
             ||||||||||||||||||||
Sbjct: 72671 tttacctggctctgcagcac 72652
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     tcttcttcatctttcatttacctg 183
               |||||||||||||||||| |||||
Sbjct: 1028609 tcttcttcatctttcattaacctg 1028632
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>dbj|AK144402.1| Mus musculus 8 days neonate male testis cDNA, RIKEN full-length
            enriched library, clone:G630055H14
            product:beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), full insert sequence
          Length = 1604

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gagaagctgcttgtccccaa 255
            ||||||||||||||||||||
Sbjct: 1417 gagaagctgcttgtccccaa 1398
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>dbj|AK146264.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
            clone:I730044B11 product:beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), full insert sequence
          Length = 1498

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gagaagctgcttgtccccaa 255
            ||||||||||||||||||||
Sbjct: 1310 gagaagctgcttgtccccaa 1291
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>gb|AE009869.1|AE009869 Pyrobaculum aerophilum strain IM2 section 124 of 201 of the complete
             genome
          Length = 13561

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   gttgcttgagctgggactgg 493
             ||||||||||||||||||||
Sbjct: 10658 gttgcttgagctgggactgg 10677
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>gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete sequence
          Length = 96628

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   tggtttggggatagatctga 449
             ||||||||||||||||||||
Sbjct: 13869 tggtttggggatagatctga 13888
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     ctcccaggtagccaattcag 316
               ||||||||||||||||||||
Sbjct: 5939559 ctcccaggtagccaattcag 5939578
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>gb|BC002103.1| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), mRNA (cDNA clone MGC:6591
            IMAGE:3485805), complete cds
          Length = 1473

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  gagaagctgcttgtccccaa 255
            ||||||||||||||||||||
Sbjct: 1262 gagaagctgcttgtccccaa 1243
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>emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 map Xq28, complete
             sequence
          Length = 166183

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   ttgtaagctgctggaccaat 544
             ||||||||||||||||||||
Sbjct: 70004 ttgtaagctgctggaccaat 70023
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>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete
              sequence
          Length = 258789

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 134    ccacacttagccactctgttctcc 157
              ||||||||| ||||||||||||||
Sbjct: 193369 ccacacttacccactctgttctcc 193346
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>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17,
             complete sequence
          Length = 137981

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   ctcccaggtagccaattcag 316
             ||||||||||||||||||||
Sbjct: 82796 ctcccaggtagccaattcag 82815
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 147    ctctgttctcctgtcttcttcatctttc 174
              |||||||||||||||||| |||||||||
Sbjct: 501789 ctctgttctcctgtcttc-tcatctttc 501815


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,522,341
Number of Sequences: 3902068
Number of extensions: 5522341
Number of successful extensions: 100798
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 100548
Number of HSP's gapped (non-prelim): 252
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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