>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.6 kDa polypeptide)
          Length = 116

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = -1

Query: 605 QANPPQRRAYTQAINDLDKELENLKQAFEDEKTRFES 495
           Q++P Q  AY QAINDLDKEL+ LK  FE E  +F +
Sbjct: 80  QSSPMQ--AYNQAINDLDKELDYLKNQFEAEVAKFSN 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,919,164
Number of Sequences: 219361
Number of extensions: 1405586
Number of successful extensions: 3472
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3472
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)