ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9a15 |
|---|---|
| Clone Library Name | barley_pub |
>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (Zinc finger C3HC-type protein 1) Length = 502 Score = 33.9 bits (76), Expect = 0.48 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -3 Query: 574 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFC--GWQLTVDAL 440 FDP H ++CPWVN + N G+ +++A GW+ + L Sbjct: 419 FDPTSQHRDWCPWVNVTLGKESRENGGTEPDASAPAEPGWKAVLTIL 465
>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (hNIPA) (Zinc finger C3HC-type protein 1) Length = 502 Score = 33.5 bits (75), Expect = 0.63 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -3 Query: 574 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAFC--GWQLTVDAL 440 FDP H ++CPWVN + N G+ +++A GW+ + L Sbjct: 419 FDPTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTIL 465
>NIPA_XENTR (Q5M8S7) NIPA-like protein (Zinc finger C3HC-type protein 1-like)| Length = 478 Score = 32.7 bits (73), Expect = 1.1 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = -3 Query: 574 FDPIKHHNNYCPWVNGYVATACTMNTGSSTNSAAF---CGWQLTVDALETVQSLGQNQYQ 404 FDP+ H ++CPWVN A+ T GS A GW+ ++ L L + + Sbjct: 391 FDPLSQHRSWCPWVNVCQASE-TSTLGSEIQEEASRKEYGWKEVLNVL-----LAEENSR 444 Query: 403 AMKSDSAASLYKDDH 359 + +S+ + H Sbjct: 445 TLSDPDTSSVPEKSH 459
>NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type protein 1-like)| Length = 477 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 574 FDPIKHHNNYCPWVNGYVATACTMNTGSS 488 FDP+ H ++CPWVN V A NT S Sbjct: 394 FDPLSQHRSWCPWVN--VCQASGTNTMGS 420
>NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (mNIPA) (Zinc finger C3HC-type protein 1) Length = 501 Score = 30.0 bits (66), Expect = 6.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 574 FDPIKHHNNYCPWVN 530 FDP H ++CPWVN Sbjct: 418 FDPTSQHRDWCPWVN 432
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 526 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 365 YV CT SS N+A W+L +++ E ++ L Y + K+ + +YKD Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184
>FBX42_MOUSE (Q6PDJ6) F-box only protein 42| Length = 717 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 526 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 365 YV CT SS N+A W+L +++ E ++ L Y + K+ + +YKD Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -3 Query: 526 YVATACTMNTGSSTNSAAFCGWQLTVDALETVQSLGQNQYQAMKSDSAASLYKD 365 YV CT SS N+A W+L +++ E ++ L Y + K+ + +YKD Sbjct: 134 YVFGGCTQ---SSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKD 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,302,997 Number of Sequences: 219361 Number of extensions: 1651623 Number of successful extensions: 4101 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3983 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4100 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
