ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9a15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA 167 6e-38
2dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 6e-38
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
4dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 2e-07
6gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 66 2e-07
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
8dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
9dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
10gb|AY108127.1| Zea mays PCO088339 mRNA sequence 58 4e-05
11ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRC... 48 0.039
12gb|AY083934.1| Gallus gallus breast cancer susceptibility protei... 48 0.039
13dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BR... 48 0.039
14gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 44 0.60
15gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.60
16gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.60
17gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, comp... 44 0.60
18gb|CP000001.1| Bacillus cereus E33L, complete genome 44 0.60
19emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19... 44 0.60
20gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromo... 44 0.60
21gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chrom... 44 0.60
22gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.60
23gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome... 42 2.4
24gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4... 42 2.4
25gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complet... 42 2.4
26emb|Y11171.1|BC542A B.cereus bc542a gene 42 2.4
27dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 42 2.4
28gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 2.4
29gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 40 9.4
30gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosom... 40 9.4
31gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 40 9.4
32gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, co... 40 9.4
33ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin ... 40 9.4
34gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosom... 40 9.4
35gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome... 40 9.4
36emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete s... 40 9.4
37gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complet... 40 9.4
38gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, comple... 40 9.4
39emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chr... 40 9.4
40gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence 40 9.4
41emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P... 40 9.4
42ref|XM_964459.1| PREDICTED: Tribolium castaneum similar to CG152... 40 9.4
43gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 9.4
44gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1... 40 9.4
45dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct i... 40 9.4
46gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E... 40 9.4
47ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase f... 40 9.4
48gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 9.4
49gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, comple... 40 9.4
50gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromoso... 40 9.4
51gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosom... 40 9.4
52gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14... 40 9.4
53gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24... 40 9.4
54gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complet... 40 9.4
55emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in... 40 9.4
56emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on ch... 40 9.4
57dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 9.4
58gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosom... 40 9.4
59gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, comple... 40 9.4
60emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chrom... 40 9.4
61emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chr... 40 9.4
62emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4... 40 9.4 
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score =  167 bits (84), Expect = 6e-38
 Identities = 316/392 (80%), Gaps = 6/392 (1%)
 Strand = Plus / Minus

                                                                        
Query: 296  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 355
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                                                        
Query: 356  ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 415
              | |||||||||||||| |||||||||||||| ||||||  |||   |||||  |||  
Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796

                                                                        
Query: 416  ttgaccaagagactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 475
            |||| |||||||||||| ||| || ||||||||||||||||||||||||||  ||| | |
Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736

                                                                        
Query: 476  tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 535
             | ||||   ||||||||||||||||| |||  |||||| |  ||||||| |||||| ||
Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679

                                                                        
Query: 536  ccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacccgtttcaga 595
            |||||| ||||| |||||||||||  | ||||| ||||| ||||||||||| | |||| |
Sbjct: 2678 ccatgggcaataattgttgtgatgactaattgggtcaaattctggaagacctgcttcata 2619

                                                                        
Query: 596  atcattttccccattcgttgctccaagatcatttcctgggtcatactcgtccttcgtcag 655
             |||||| |||| |   ||||| ||||||||| |||||| ||||| ||||| || |   |
Sbjct: 2618 gtcatttcccccgt---ttgctgcaagatcatctcctggatcatagtcgtcatttgctgg 2562

                                            
Query: 656  cattttaccagtctgggtcacttcatctttag 687
            || |||| || |||| ||||| ||||||||||
Sbjct: 2561 caatttagcaatctgtgtcacctcatctttag 2530
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>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
            insert sequence
          Length = 3250

 Score =  167 bits (84), Expect = 6e-38
 Identities = 316/392 (80%), Gaps = 6/392 (1%)
 Strand = Plus / Minus

                                                                        
Query: 296  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 355
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                                                        
Query: 356  ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 415
              | |||||||||||||| |||||||||||||| ||||||  |||   |||||  |||  
Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796

                                                                        
Query: 416  ttgaccaagagactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 475
            |||| |||||||||||| ||| || ||||||||||||||||||||||||||  ||| | |
Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736

                                                                        
Query: 476  tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 535
             | ||||   ||||||||||||||||| |||  |||||| |  ||||||| |||||| ||
Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679

                                                                        
Query: 536  ccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacccgtttcaga 595
            |||||| ||||| |||||||||||  | ||||| ||||| ||||||||||| | |||| |
Sbjct: 2678 ccatgggcaataattgttgtgatgactaattgggtcaaattctggaagacctgcttcata 2619

                                                                        
Query: 596  atcattttccccattcgttgctccaagatcatttcctgggtcatactcgtccttcgtcag 655
             |||||| |||| |   ||||| ||||||||| |||||| ||||| ||||| || |   |
Sbjct: 2618 gtcatttcccccgt---ttgctgcaagatcatctcctggatcatagtcgtcatttgctgg 2562

                                            
Query: 656  cattttaccagtctgggtcacttcatctttag 687
            || |||| || |||| ||||| ||||||||||
Sbjct: 2561 caatttagcaatctgtgtcacctcatctttag 2530
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 197/241 (81%), Gaps = 3/241 (1%)
 Strand = Plus / Plus

                                                                           
Query: 367     ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaagag 426
               ||||||| |||||||||||||| ||||||  |||   |||||  |||  |||| ||||||
Sbjct: 2667181 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 2667240

                                                                           
Query: 427     actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 486
               |||||| ||| || ||||||||||||||||||||||||||  ||| | | | ||||   |
Sbjct: 2667241 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 2667297

                                                                           
Query: 487     tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 546
               |||||||||||||||| |||  |||||| |  ||||||| |||||| |||||||| ||||
Sbjct: 2667298 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 2667357

                                                                           
Query: 547     agttgttgtgatgcttgattggatcaaactctggaagacccgtttcagaatcattttccc 606
               | |||||||||||  | ||||| ||||| ||||||||||| | |||| | |||||| |||
Sbjct: 2667358 aattgttgtgatgactaattgggtcaaattctggaagacctgcttcatagtcatttcccc 2667417

                
Query: 607     c 607
               |
Sbjct: 2667418 c 2667418
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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score =  125 bits (63), Expect = 2e-25
 Identities = 197/241 (81%), Gaps = 3/241 (1%)
 Strand = Plus / Plus

                                                                         
Query: 367   ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaagag 426
             ||||||| |||||||||||||| ||||||  |||   |||||  |||  |||| ||||||
Sbjct: 92899 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 92958

                                                                         
Query: 427   actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 486
             |||||| ||| || ||||||||||||||||||||||||||  ||| | | | ||||   |
Sbjct: 92959 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 93015

                                                                         
Query: 487   tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 546
             |||||||||||||||| |||  |||||| |  ||||||| |||||| |||||||| ||||
Sbjct: 93016 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 93075

                                                                         
Query: 547   agttgttgtgatgcttgattggatcaaactctggaagacccgtttcagaatcattttccc 606
             | |||||||||||  | ||||| ||||| ||||||||||| | |||| | |||||| |||
Sbjct: 93076 aattgttgtgatgactaattgggtcaaattctggaagacctgcttcatagtcatttcccc 93135

              
Query: 607   c 607
             |
Sbjct: 93136 c 93136
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                            
Query: 527      tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 586
                |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 32288658 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 32288717

                                                 
Query: 587      cgtttcagaatcattttccccattcgttgctcc 619
                 | |||| |||||||||| ||||| ||||||||
Sbjct: 32288718 tgattcaaaatcattttctccatttgttgctcc 32288750
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                         
Query: 527   tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 586
             |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 22425 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 22484

                                              
Query: 587   cgtttcagaatcattttccccattcgttgctcc 619
              | |||| |||||||||| ||||| ||||||||
Sbjct: 22485 tgattcaaaatcattttctccatttgttgctcc 22517
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                            
Query: 527      tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 586
                |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 32379168 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 32379227

                                                 
Query: 587      cgtttcagaatcattttccccattcgttgctcc 619
                 | |||| |||||||||| ||||| ||||||||
Sbjct: 32379228 tgattcaaaatcattttctccatttgttgctcc 32379260
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>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
            insert sequence
          Length = 3325

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                        
Query: 527  tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 586
            |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 2683 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 2624

                                             
Query: 587  cgtttcagaatcattttccccattcgttgctcc 619
             | |||| |||||||||| ||||| ||||||||
Sbjct: 2623 tgattcaaaatcattttctccatttgttgctcc 2591
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>dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A04, full
           insert sequence
          Length = 577

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 527 tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 586
           |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 258 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 199

                                            
Query: 587 cgtttcagaatcattttccccattcgttgctcc 619
            | |||| |||||||||| ||||| ||||||||
Sbjct: 198 tgattcaaaatcattttctccatttgttgctcc 166
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>gb|AY108127.1| Zea mays PCO088339 mRNA sequence
          Length = 666

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                       
Query: 330 cttttcagcagcttgtggctaggtgcggcgtggtcatccttatatagtgatgccgcagaa 389
           ||||||||||||||  ||||||| | | |||| || |||||||||| ||| |||||||| 
Sbjct: 217 cttttcagcagcttccggctaggcgggacgtgatcgtccttatataatgaagccgcagag 158

                                                                       
Query: 390 tcagacttcatggcttgatactggttttgaccaagagactggacagtctcaagtgcatct 449
           || |||| ||| |  ||||  |||   |||||||||||||| | |||||| |  ||||||
Sbjct: 157 tctgactgcatcgtctgattttgggcctgaccaagagactgcagagtctcgatggcatct 98

                            
Query: 450 actgtaagctgccagcc 466
           || || |||||||||||
Sbjct: 97  accgtgagctgccagcc 81
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>ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRCA2), mRNA
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 590  ttcagaatcattttccccattcgttgctccaa 621
            ||||||| |||||||| |||||||||||||||
Sbjct: 3351 ttcagaagcattttccacattcgttgctccaa 3320
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>gb|AY083934.1| Gallus gallus breast cancer susceptibility protein (BRCA2) mRNA,
            complete cds
          Length = 10197

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 590  ttcagaatcattttccccattcgttgctccaa 621
            ||||||| |||||||| |||||||||||||||
Sbjct: 3354 ttcagaagcattttccacattcgttgctccaa 3323
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>dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BRCA2, complete cds
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 590  ttcagaatcattttccccattcgttgctccaa 621
            ||||||| |||||||| |||||||||||||||
Sbjct: 3351 ttcagaagcattttccacattcgttgctccaa 3320
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 86      aaaagaaacaacagctaggcaacaag 111
               ||||||||||||||||| ||||||||
Sbjct: 1934290 aaaagaaacaacagctatgcaacaag 1934265
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 86      aaaagaaacaacagctaggcaacaag 111
               ||||||||||||||||| ||||||||
Sbjct: 1897377 aaaagaaacaacagctatgcaacaag 1897352
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 86      aaaagaaacaacagctaggcaacaag 111
               ||||||||||||||||| ||||||||
Sbjct: 1897321 aaaagaaacaacagctatgcaacaag 1897296
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>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence
          Length = 252659

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 34     tcagaattttagactcacaaaa 55
              ||||||||||||||||||||||
Sbjct: 182509 tcagaattttagactcacaaaa 182488
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 86      aaaagaaacaacagctaggcaacaag 111
               ||||||||||||||||| ||||||||
Sbjct: 1955054 aaaagaaacaacagctatgcaacaag 1955029
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>emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19 on chromosome 6 Contains part
             of the PRIM2A gene for primase polypeptide 2A (58kD) and a
             novel gene, complete sequence
          Length = 138411

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 43    tagactcacaaaatcttccaga 64
             ||||||||||||||||||||||
Sbjct: 73780 tagactcacaaaatcttccaga 73801
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>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete
             sequence
          Length = 158234

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 43    tagactcacaaaatcttccaga 64
             ||||||||||||||||||||||
Sbjct: 31530 tagactcacaaaatcttccaga 31551
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>gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chromosome 6, complete
             sequence
          Length = 188415

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 43    tagactcacaaaatcttccaga 64
             ||||||||||||||||||||||
Sbjct: 36612 tagactcacaaaatcttccaga 36591
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 86      aaaagaaacaacagctaggcaacaag 111
               ||||||||||||||||| ||||||||
Sbjct: 1897254 aaaagaaacaacagctatgcaacaag 1897229
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>gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome 17, complete sequence
          Length = 171447

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    atataaacacaataaaagaaa 93
             |||||||||||||||||||||
Sbjct: 75101 atataaacacaataaaagaaa 75121
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>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete
              sequence
          Length = 258658

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     tatataaacacaataaaagaa 92
              |||||||||||||||||||||
Sbjct: 194672 tatataaacacaataaaagaa 194652
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>gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complete sequence
          Length = 197946

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 256   ttgagctggatccaagtttag 276
             |||||||||||||||||||||
Sbjct: 38287 ttgagctggatccaagtttag 38267
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>emb|Y11171.1|BC542A B.cereus bc542a gene
          Length = 2195

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 86  aaaagaaacaacagctaggcaacaa 110
           ||||||||||||||||| |||||||
Sbjct: 315 aaaagaaacaacagctatgcaacaa 291
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 622     gatcatttcctgggtcatactcgtc 646
               ||||||||||| |||||||||||||
Sbjct: 2664792 gatcatttcctcggtcatactcgtc 2664768
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 86      aaaagaaacaacagctaggcaacaa 110
               ||||||||||||||||| |||||||
Sbjct: 2021940 aaaagaaacaacagctatgcaacaa 2021916
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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    aatgctgcactatttgtgct 490
              ||||||||||||||||||||
Sbjct: 120734 aatgctgcactatttgtgct 120753
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>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence
          Length = 197843

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 520    caacatatccattaacccat 539
              ||||||||||||||||||||
Sbjct: 175446 caacatatccattaacccat 175427
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>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    ataaacacaataaaagaaacaaca 98
             ||||||| ||||||||||||||||
Sbjct: 28965 ataaacataataaaagaaacaaca 28942
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>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 73    atataaacacaataaaagaaacaa 96
             ||||||||| ||||||||||||||
Sbjct: 63779 atataaacaaaataaaagaaacaa 63756
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>ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin isoform B (LOC488593),
             mRNA
          Length = 15600

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ttcctcttccgccgcctgct 160
             ||||||||||||||||||||
Sbjct: 12343 ttcctcttccgccgcctgct 12362
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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aatatataaacacaataaaa 89
              ||||||||||||||||||||
Sbjct: 107679 aatatataaacacaataaaa 107660
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>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    ttttggccttttcagcagct 342
              ||||||||||||||||||||
Sbjct: 132132 ttttggccttttcagcagct 132151
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>emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete sequence
          Length = 24957

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 tctacaatctacaatgctta 135
           ||||||||||||||||||||
Sbjct: 201 tctacaatctacaatgctta 182
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>gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complete sequence
          Length = 108878

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tacattcagaattttagact 48
             ||||||||||||||||||||
Sbjct: 58720 tacattcagaattttagact 58701
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>gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, complete sequence
          Length = 153260

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tacattcagaattttagact 48
              ||||||||||||||||||||
Sbjct: 111689 tacattcagaattttagact 111708
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>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
            ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene
            for transcription factor AP-2 alpha (activating
            enhancer-binding protein 2 alpha), four novel genes, a
            mitochondrial ribosomal protein L47 (MRPL47) pseudogene
            and 11 CpG islands, complete sequence
          Length = 180133

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  agcacttgctgtgttttggc 329
            ||||||||||||||||||||
Sbjct: 9698 agcacttgctgtgttttggc 9717
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>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence
          Length = 134105

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tgttttggccttttcagcag 340
             ||||||||||||||||||||
Sbjct: 20428 tgttttggccttttcagcag 20447
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>emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P7 on chromosome Xq25-26.3,
             complete sequence
          Length = 103989

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   ctggaaccagtattcatagt 508
             ||||||||||||||||||||
Sbjct: 41570 ctggaaccagtattcatagt 41589
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>ref|XM_964459.1| PREDICTED: Tribolium castaneum similar to CG15288-PB, isoform B
            (LOC658046), mRNA
          Length = 9483

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 417  tgaccaagagactggacagt 436
            ||||||||||||||||||||
Sbjct: 2763 tgaccaagagactggacagt 2782
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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 70     aatatataaacacaataaaagaaa 93
              |||||| |||||||||||||||||
Sbjct: 663290 aatataaaaacacaataaaagaaa 663313
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>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete
             sequence
          Length = 200690

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tataaacacaataaaagaaa 93
             ||||||||||||||||||||
Sbjct: 60240 tataaacacaataaaagaaa 60221
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>dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720474J21 product:unclassifiable, full insert
           sequence
          Length = 2262

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  ataaacacaataaaagaaacaaca 98
           ||||||| ||||||||||||||||
Sbjct: 172 ataaacataataaaagaaacaaca 195
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>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence
          Length = 169479

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     aaacacaataaaagaaacaa 96
              ||||||||||||||||||||
Sbjct: 150216 aaacacaataaaagaaacaa 150197
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>ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-1)
            (lrs-1) mRNA, complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  tctacaatctacaatgctta 135
            ||||||||||||||||||||
Sbjct: 1809 tctacaatctacaatgctta 1828
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>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tataaacacaataaaagaaa 93
              ||||||||||||||||||||
Sbjct: 130361 tataaacacaataaaagaaa 130342
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>gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, complete sequence
          Length = 121496

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     atataaacacaataaaagaaacaa 96
              |||||||||||| |||||||||||
Sbjct: 114137 atataaacacaagaaaagaaacaa 114160
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>gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromosome 7, complete sequence
          Length = 163009

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     tacattcagaattttagact 48
              ||||||||||||||||||||
Sbjct: 151038 tacattcagaattttagact 151019
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>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete
             sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    atatataaacacaataaaag 90
             ||||||||||||||||||||
Sbjct: 44377 atatataaacacaataaaag 44396
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>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
             sequence
          Length = 102135

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    aatatataaacacaataaaagaaa 93
             |||||||||| |||||||||||||
Sbjct: 48443 aatatataaagacaataaaagaaa 48420
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>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete
             sequence
          Length = 77923

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    aatatataaacacaataaaagaaa 93
             |||||||||| |||||||||||||
Sbjct: 46129 aatatataaagacaataaaagaaa 46152
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>gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complete sequence
          Length = 41775

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    ataaaagaaacaacagctaggcaa 107
             ||||||||||||||| ||||||||
Sbjct: 31016 ataaaagaaacaacatctaggcaa 30993
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>emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23,
              complete sequence
          Length = 180590

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aatatataaacacaataaaa 89
              ||||||||||||||||||||
Sbjct: 176776 aatatataaacacaataaaa 176795
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>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete
             sequence
          Length = 217552

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 397   tcatggcttgatactggttttgac 420
             |||||| |||||||||||||||||
Sbjct: 84017 tcatggtttgatactggttttgac 84040
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 78      aacacaataaaagaaacaacagct 101
               ||||||||||||| ||||||||||
Sbjct: 3821701 aacacaataaaagcaacaacagct 3821678
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>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete
           sequence
          Length = 229410

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 73  atataaacacaataaaagaaacaa 96
           ||||||||| ||||||||||||||
Sbjct: 893 atataaacaaaataaaagaaacaa 916
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>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence
          Length = 190233

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 73     atataaacacaataaaagaaacaa 96
              ||||||||| ||||||||||||||
Sbjct: 171827 atataaacaaaataaaagaaacaa 171804
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>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aatatataaacacaataaaa 89
              ||||||||||||||||||||
Sbjct: 222230 aatatataaacacaataaaa 222249
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>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete
              sequence
          Length = 156705

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     tatataaacacaataaaagaaaca 95
              |||||||||||||||||| |||||
Sbjct: 113420 tatataaacacaataaaacaaaca 113397
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>emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4 on chromosome X, complete
             sequence
          Length = 46930

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   ctggaaccagtattcatagt 508
             ||||||||||||||||||||
Sbjct: 41580 ctggaaccagtattcatagt 41599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,295,180
Number of Sequences: 3902068
Number of extensions: 6295180
Number of successful extensions: 130305
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129774
Number of HSP's gapped (non-prelim): 531
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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