>BT3L4_MOUSE (Q9CQH7) Transcription factor BTF3 homolog 4 (Basic transcription|
           factor 3-like 4)
          Length = 158

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+ KDD  V  F NPKVQAS  A T+ ++G  + K + ++LP I++QLG D+L + R+L
Sbjct: 57  VNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKL 116

Query: 288 AEQFQKQV 265
           AEQF +QV
Sbjct: 117 AEQFPRQV 124

>BT3L4_HUMAN (Q96K17) Transcription factor BTF3 homolog 4 (Basic transcription|
           factor 3-like 4)
          Length = 158

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+ KDD  V  F NPKVQAS  A T+ ++G  + K + ++LP I++QLG D+L + R+L
Sbjct: 57  VNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKL 116

Query: 288 AEQFQKQV 265
           AEQF +QV
Sbjct: 117 AEQFPRQV 124

>BTF3_MOUSE (Q64152) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 204

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+F +   V  F NPKVQAS  A T+ ++G  +TK+L ++LPSI+NQLG D+L + RRL
Sbjct: 104 VNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRL 163

Query: 288 AEQFQKQ 268
           AE   KQ
Sbjct: 164 AEALPKQ 170

>BTF3_HUMAN (P20290) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 206

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+F +   V  F NPKVQAS  A T+ ++G  +TK+L ++LPSI+NQLG D+L + RRL
Sbjct: 106 VNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRL 165

Query: 288 AEQFQKQ 268
           AE   KQ
Sbjct: 166 AEALPKQ 172

>BTF3_CAEEL (Q18885) Transcription factor BTF3 homolog (Inhibitor of cell death|
           1)
          Length = 161

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+ KDD  V  F NPKVQ S  A T+ V+G+   K++ ++LP I+NQLGP++L + ++L
Sbjct: 64  VNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKL 123

Query: 288 AEQFQKQVP 262
           A    K  P
Sbjct: 124 ANNVTKLGP 132

>BT3L3_HUMAN (Q13892) Transcription factor BTF3 homolog 3 (Basic transcription|
           factor 3-like 3)
          Length = 214

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+F +   V  F NPK QAS    T+ ++G  + K++ ++LPS+++QLG D+L + RRL
Sbjct: 92  VNMFTNQGTVIHFNNPKFQASLAVNTFTITGHAEAKQVTEMLPSVLSQLGADSLTSLRRL 151

Query: 288 AEQFQKQ 268
           AE   KQ
Sbjct: 152 AEVLPKQ 158

>EGD1_YEAST (Q02642) BTF3 homolog EGD1 (GAL4 DNA-binding enhancer protein 1)|
          Length = 157

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 37/100 (37%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -3

Query: 462 NIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRLA 286
           N FKDD  V  F    VQ +    T V  G PQ K LQDL P II+QLGP+ +    +LA
Sbjct: 63  NFFKDDGKVMHFNKVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLA 122

Query: 285 EQFQKQVPXXXXXXXXXXXXXXXXXXXXXDVPELVPGETF 166
            Q +K                         +PELV G+TF
Sbjct: 123 AQMEKH----------EAKAPADAEKKDEAIPELVEGQTF 152

>BTF3_SCHPO (Q92371) Transcription factor BTF3 homolog|
          Length = 151

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -3

Query: 465 VNIFKDDV-VXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRL 289
           VN+FK+D  V  F  P V +S    T  + G  + K L ++LP I+N LGP++L   R++
Sbjct: 59  VNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQM 118

Query: 288 AEQFQ 274
           AEQ +
Sbjct: 119 AEQLK 123

>BT3L1_HUMAN (Q13890) Transcription factor BTF3 homolog 1 (Basic transcription|
           factor 3-like 1)
          Length = 111

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -3

Query: 465 VNIFKDD-VVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSI 334
           VN+F     V  F NP+VQAS  A T+ ++G  +TK+L ++L SI
Sbjct: 58  VNMFTHQGTVIHFNNPEVQASLAANTFTMTGHAETKQLTEMLLSI 102

>BTT1_YEAST (P40314) BTF3 homolog BTT1|
          Length = 149

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 453 KDDVVXQFXNPKVQASXGAXTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNXRRLAEQFQ 274
           K+  V  F +  VQ +      ++ G P+   L  L PS+ +QLG   L+    LA   +
Sbjct: 67  KNGKVLHFNSAVVQIAPQCNLTMIHGQPKENTLNGLYPSVASQLGSQELEYLTGLAHNLE 126

Query: 273 KQ 268
            +
Sbjct: 127 NE 128

>POL_BLVJ (P03361) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 852

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
 Frame = -3

Query: 420 KVQASXGAXTWVVSGTPQTKKLQDLL---------PSIINQLGPDNLDNXRRLAE 283
           ++QA  G   WV  GTP T++   LL         P  I QL P+ L     L +
Sbjct: 235 QLQAVLGDLQWVSRGTPTTRRPLQLLYSSLKRHHDPRAIIQLSPEQLQGIAELRQ 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,483,707
Number of Sequences: 219361
Number of extensions: 733332
Number of successful extensions: 1775
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)