Clone Information

BLAST Search Result

Clone Name	rbags8l03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NOX3_MOUSE (Q672J9) NADPH oxidase 3 (EC 1.6.3.-)	74	3e-13
2	NOX3_HUMAN (Q9HBY0) NADPH oxidase 3 (EC 1.6.3.-) (gp91phox homol...	74	3e-13
3	NOX3_RAT (Q672K1) NADPH oxidase 3 (EC 1.6.3.-)	74	3e-13
4	DUOX1_CAEEL (O61213) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1...	70	3e-12
5	NOX1_RAT (Q9WV87) NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NADH/...	68	2e-11
6	CY24B_HUMAN (P04839) Cytochrome b-245 heavy chain (p22 phagocyte...	67	3e-11
7	CY24B_BOVIN (O46522) Cytochrome b-245 heavy chain (p22 phagocyte...	67	3e-11
8	CY24B_BISBI (Q95L74) Cytochrome b-245 heavy chain (p22 phagocyte...	67	3e-11
9	DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1...	65	9e-11
10	DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1...	65	2e-10
11	CY24B_PIG (P52649) Cytochrome b-245 heavy chain (p22 phagocyte B...	64	2e-10
12	DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.1...	64	2e-10
13	DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1...	64	2e-10
14	NOX1_HUMAN (Q9Y5S8) NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NAD...	64	2e-10
15	DUOX2_PIG (Q8HZK2) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.1...	64	3e-10
16	DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.1...	64	4e-10
17	NOX5_HUMAN (Q96PH1) NADPH oxidase 5 (EC 1.6.3.-)	63	5e-10
18	DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)	63	6e-10
19	CY24B_MOUSE (Q61093) Cytochrome b-245 heavy chain (p22 phagocyte...	62	1e-09
20	DUOX2_RAT (Q9ES45) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.1...	59	1e-08
21	Y2660_AGRT5 (Q8UC38) UPF0235 protein Atu2660/AGR_C_4821	33	0.51
22	YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 i...	33	0.67
23	RPOB_DECAR (Q47JB0) DNA-directed RNA polymerase beta chain (EC 2...	32	1.5
24	CPSM_RAT (P07756) Carbamoyl-phosphate synthase [ammonia], mitoch...	32	1.5
25	CPSM_MOUSE (Q8C196) Carbamoyl-phosphate synthase [ammonia], mito...	32	1.5
26	CPSM_HUMAN (P31327) Carbamoyl-phosphate synthase [ammonia], mito...	32	1.5
27	RPOB_NITOC (Q3J8Q7) DNA-directed RNA polymerase beta chain (EC 2...	31	1.9
28	MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)	31	2.5
29	MAD26_ORYSA (Q8L887) MADS-box transcription factor 26 (OsMADS26)...	31	2.5
30	TOP6A_METTH (O27089) Type II DNA topoisomerase VI subunit A (EC ...	31	2.5
31	PDLI2_HUMAN (Q96JY6) PDZ and LIM domain protein 2 (PDZ-LIM prote...	31	2.5
32	RPOB_LEGPN (O86094) DNA-directed RNA polymerase beta chain (EC 2...	30	3.3
33	RPOB_LEGPL (Q5WZL9) DNA-directed RNA polymerase beta chain (EC 2...	30	3.3
34	RPOB_LEGPH (Q5ZYQ0) DNA-directed RNA polymerase beta chain (EC 2...	30	3.3
35	RPOB_LEGPA (Q5X866) DNA-directed RNA polymerase beta chain (EC 2...	30	3.3
36	PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2	30	3.3
37	RS9_HALMA (P05763) 30S ribosomal protein S9P (HmaS9) (HS3) (F1)	30	3.3
38	RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2...	30	4.3
39	PROB_BIFLO (Q8G4T9) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	30	4.3
40	RPOB_FUSNN (Q8RHI6) DNA-directed RNA polymerase beta chain (EC 2...	29	7.4
41	Y396_HELPY (O25157) Hypothetical protein HP0396	29	7.4
42	Y396_HELPJ (Q9ZKF3) Hypothetical protein jhp_0985	29	7.4
43	YDDE_ECOLI (P37757) Protein yddE (ORFB)	29	7.4
44	YDDE_ECO57 (P58292) Protein yddE	29	7.4
45	RPOB_TREDE (Q73JJ7) DNA-directed RNA polymerase beta chain (EC 2...	29	7.4
46	RPOB_BORPA (Q7W2G9) DNA-directed RNA polymerase beta chain (EC 2...	29	7.4
47	RPOB_BORBR (Q7WRD9) DNA-directed RNA polymerase beta chain (EC 2...	29	7.4
48	VGLY_JUNIN (P26313) Glycoprotein polyprotein [Contains: Glycopro...	29	7.4
49	HMH2_DUGTI (Q00401) Homeobox protein DTH-2	29	7.4
50	BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle pr...	29	7.4
51	RPOB_BORPE (Q7W0R9) DNA-directed RNA polymerase beta chain (EC 2...	29	7.4
52	RPOB_AQUAE (O67762) DNA-directed RNA polymerase beta chain (EC 2...	29	7.4
53	RPOB_BRAJA (Q89J74) DNA-directed RNA polymerase beta chain (EC 2...	29	9.6
54	CYDA_BACSU (P94364) Cytochrome d ubiquinol oxidase subunit 1 (EC...	29	9.6
55	YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5	29	9.6
56	RPOB_NITWN (Q3SSY0) DNA-directed RNA polymerase beta chain (EC 2...	29	9.6
57	RPOB_BURPS (Q63Q03) DNA-directed RNA polymerase beta chain (EC 2...	29	9.6
58	RPOB_BURP1 (Q3JMQ3) DNA-directed RNA polymerase beta chain (EC 2...	29	9.6
59	RPOB_BURMA (P0C151) DNA-directed RNA polymerase beta chain (EC 2...	29	9.6
60	RL2_NITEU (Q82X85) 50S ribosomal protein L2	29	9.6

>NOX3_MOUSE (Q672J9) NADPH oxidase 3 (EC 1.6.3.-)|
          Length = 568

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
 Frame = -1

Query: 443 RAYSYWVTREEGSFEWFRGVM----NEVAEKDKDGVIELHNHCSSVYQEG-DARSALIVM 279
           + Y YW+ R+ G+FEWF  ++      ++E+ K  ++  H     +Y  G D   A+ + 
Sbjct: 436 KVYFYWICRDAGAFEWFADLLLSLETRMSEQGKAHLLSYH-----IYLTGWDENQAIHIA 490

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
           L    H  + +D+++G   K  + RPNW   FK+IA NH +  +GVF+CG
Sbjct: 491 L----HWDESLDVITGLKQKAFYGRPNWNDEFKQIAYNHPSSSIGVFFCG 536

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>NOX3_HUMAN (Q9HBY0) NADPH oxidase 3 (EC 1.6.3.-) (gp91phox homolog 3) (GP91-3)|
           (Mitogenic oxidase 2)
          Length = 568

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
 Frame = -1

Query: 464 KXPFMTKRAYSYWVTREEGSFEWFRGVM----NEVAEKDKDGVIELHNHCSSVYQEG-DA 300
           + P    + Y YW+ R+  +FEWF  ++      ++E+ K   +  H     ++  G D 
Sbjct: 429 QTPLKLSKVYFYWICRDARAFEWFADLLLSLETRMSEQGKTHFLSYH-----IFLTGWDE 483

Query: 299 RSALIVMLQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
             AL + L    H  +  D+++G   KT + RPNW + FK+IA NH +  +GVF+CG
Sbjct: 484 NQALHIAL----HWDENTDVITGLKQKTFYGRPNWNNEFKQIAYNHPSSSIGVFFCG 536

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>NOX3_RAT (Q672K1) NADPH oxidase 3 (EC 1.6.3.-)|
          Length = 568

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
 Frame = -1

Query: 443 RAYSYWVTREEGSFEWFRGVM----NEVAEKDKDGVIELHNHCSSVYQEG-DARSALIVM 279
           + Y YW+ R+  +FEWF  ++     +++E+ K  ++  H     +Y  G D   A+ + 
Sbjct: 436 KVYFYWICRDAAAFEWFADLLLSLETQMSEQGKAHLLSYH-----IYLTGWDEYQAIHIA 490

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
           L    H  + +D+++G   KT + RPNW   FK+IA NH +  +GVF+CG
Sbjct: 491 L----HWDESLDVITGLKQKTFYGRPNWNEEFKQIAYNHPSSSIGVFFCG 536

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>DUOX1_CAEEL (O61213) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (DUOX1)|
            (NADPH thyroid oxidase 1) (Blistered cuticle protein 3)
          Length = 1497

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = -1

Query: 446  KRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQE- 270
            ++ Y  WV     ++EWF  V+  V ++ + G++E H   +  + + D R+ ++ + ++ 
Sbjct: 1359 RKVYFLWVCSTHKNYEWFVDVLKNVEDQARSGILETHIFVTQTFHKFDLRTTMLYICEKH 1418

Query: 269  LNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQ-RVGVFYCG 129
                  G+ + +G   K HF RPN+++ F+ I   H+ Q ++GVF CG
Sbjct: 1419 FRATNSGISMFTGLHAKNHFGRPNFKAFFQFIQSEHKEQSKIGVFSCG 1466

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>NOX1_RAT (Q9WV87) NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NADH/NADPH|
           mitogenic oxidase subunit P65-MOX) (Mitogenic oxidase 1)
           (MOX1)
          Length = 563

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
 Frame = -1

Query: 449 TKRAYSYWVTREEGSFEWFRGVMNEVA-EKDKDGVIELHNHCSSVYQEG-DARSALIVML 276
           T++ Y YW+ RE G+F WF  ++N +  E D+ G  +  N+   ++  G D+  A    L
Sbjct: 429 TQKIYFYWICRETGAFAWFNNLLNSLEQEMDELGKPDFLNY--RLFLTGWDSNIAGHAAL 486

Query: 275 QELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEP 123
               +  +  D+L+G   KT F RP W + F RIA  H    VGVF CG P
Sbjct: 487 ----NFDRATDVLTGLKQKTSFGRPMWDNEFSRIATAHPKSVVGVFLCGPP 533

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>CY24B_HUMAN (P04839) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 be
          Length = 569

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
 Frame = -1

Query: 446 KRAYSYWVTREEGSFEWFRGVM----NEVAEKDKDGVIELHNHCSSVYQEGDARSALIVM 279
           K+ Y YW+ R+  +FEWF  ++    +++ E++  G +  + + +  + E  A    +  
Sbjct: 436 KKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTG-WDESQANHFAV-- 492

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
                H  +  D+++G   KT + RPNW + FK IA  H N R+GVF CG
Sbjct: 493 -----HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCG 537

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>CY24B_BOVIN (O46522) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 be
          Length = 570

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 446 KRAYSYWVTREEGSFEWFRGVMN----EVAEKDKDGVIELHNHCSSVYQEGDARSALIVM 279
           K+ Y YW+ R+  +FEWF  ++     ++ EK+    +  +N C + + E  A    +  
Sbjct: 437 KKIYFYWLCRDTHAFEWFADLLQLLETQMQEKNNTDFLS-YNICLTGWDESQASHFAM-- 493

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
                H  +  D+++G   KT + RPNW + FK I   H N R+GVF CG
Sbjct: 494 -----HHDEEKDVITGLKQKTLYGRPNWDNEFKTIGSQHPNTRIGVFLCG 538

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>CY24B_BISBI (Q95L74) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 be
          Length = 570

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 446 KRAYSYWVTREEGSFEWFRGVMN----EVAEKDKDGVIELHNHCSSVYQEGDARSALIVM 279
           K+ Y YW+ R+  +FEWF  ++     ++ EK+    +  +N C + + E  A    +  
Sbjct: 437 KKIYFYWLCRDTHAFEWFADLLQLLETQMQEKNNTDFLS-YNICLTGWDESQASHFAM-- 493

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
                H  +  D+++G   KT + RPNW + FK I   H N R+GVF CG
Sbjct: 494 -----HHDEEKDVITGLKQKTLYGRPNWDNEFKTIGSQHPNTRIGVFLCG 538

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>DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH|
            thyroid oxidase 1) (Thyroid oxidase 1)
          Length = 1551

 Score = 65.5 bits (158), Expect = 9e-11
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
 Frame = -1

Query: 446  KRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQEL 267
            K+ Y  WVTR +  FEW   ++ EV E D   ++ +H + + + ++ D R+ ++ + +  
Sbjct: 1415 KKIYFIWVTRTQRQFEWLADIIREVEENDCQDLVSVHIYITQLAEKFDLRTTMLYICERH 1474

Query: 266  NHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                    + +G    THF RP +   FK +  V+ + +++GVF CG P
Sbjct: 1475 FQKVLNRSLFTGLRSITHFGRPPFEPFFKSLQEVHPQVRKIGVFSCGPP 1523

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>DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH|
            oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2)
            (Thyroid oxidase 2) (NADH/NADPH thyroid oxidase p138-tox)
            (p138 thyroid oxidase) (Large NOX 2) (Long NOX 2)
          Length = 1548

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = -1

Query: 452  MTKRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQ 273
            + K+ Y  WVTR +  FEW   ++ EV E D   ++ +H + + + ++ D R+ ++ + +
Sbjct: 1410 LCKKIYFIWVTRTQRQFEWLADIIQEVEENDHQDLVSVHIYVTQLAEKFDLRTTMLYICE 1469

Query: 272  ELNHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                      + +G    THF RP +   F  +  V+ + +++GVF CG P
Sbjct: 1470 RHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCGPP 1520

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>CY24B_PIG (P52649) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 beta
          Length = 484

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 446 KRAYSYWVTREEGSFEWFRGVMN----EVAEKDKDGVIELHNHCSSVYQEGDARSALIVM 279
           K+ Y YW+ R+  +FEWF  ++     ++ E++  G +  + + +  + E  A    +  
Sbjct: 351 KKIYFYWLCRDTHAFEWFADLLQLLETQMQERNNAGFLSYNIYLTG-WDESQANHFAV-- 407

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
                H  +  D+++G   KT + RPNW + FK IA  H   R+GVF CG
Sbjct: 408 -----HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPTTRIGVFLCG 452

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>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1551

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = -1

Query: 446  KRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQEL 267
            K+ Y  WVTR +  FEW   ++ EV E D   ++ +H + + + ++ D R+ ++ + +  
Sbjct: 1415 KKIYFIWVTRTQRQFEWLADIIREVEENDSRDLVSVHIYITQLAEKFDLRTTMLYICERH 1474

Query: 266  NHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                    + +G    THF RP +   F  +  V+ + +++GVF CG P
Sbjct: 1475 FQKVLNRSLFTGLRSVTHFGRPPFEPFFNSLQEVHPQVRKIGVFSCGPP 1523

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>DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH|
            thyroid oxidase 1) (Thyroid oxidase 1) (Large NOX 1)
            (Long NOX 1)
          Length = 1551

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = -1

Query: 446  KRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQEL 267
            K+ Y  WVTR +  FEW   ++ EV E D   ++ +H + + + ++ D R+ ++ + +  
Sbjct: 1415 KKIYFIWVTRTQRQFEWLADIIREVEENDHQDLVSVHIYITQLAEKFDLRTTMLYICERH 1474

Query: 266  NHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                    + +G    THF RP +   F  +  V+ + +++GVF CG P
Sbjct: 1475 FQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCGPP 1523

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>NOX1_HUMAN (Q9Y5S8) NADPH oxidase homolog 1 (NOX-1) (NOH-1) (NADH/NADPH|
           mitogenic oxidase subunit P65-MOX) (Mitogenic oxidase 1)
           (MOX1)
          Length = 564

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -1

Query: 449 TKRAYSYWVTREEGSFEWFRGVMNEVAEKDKD-GVIELHNHCSSVYQEGDARSALIVMLQ 273
           TK+ Y YW+ RE G+F WF  ++  + ++ ++ G +   N+   ++  G    + IV   
Sbjct: 430 TKKIYFYWICRETGAFSWFNNLLTSLEQEMEELGKVGFLNY--RLFLTG--WDSNIVGHA 485

Query: 272 ELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
            LN   K  DI++G   KT F RP W + F  IA +H    VGVF CG
Sbjct: 486 ALNF-DKATDIVTGLKQKTSFGRPMWDNEFSTIATSHPKSVVGVFLCG 532

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>DUOX2_PIG (Q8HZK2) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)|
            (NADH/NADPH thyroid oxidase p138-tox)
          Length = 1545

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = -1

Query: 452  MTKRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQ 273
            + K+ Y  WVTR +  FEW   ++ EV E D   ++ +H + + + ++ D R+ ++ + +
Sbjct: 1407 LCKKIYFIWVTRTQRQFEWLADIIREVEENDHRDLVSVHIYITQLAEKFDLRTTMLYICE 1466

Query: 272  ELNHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                      + +G    THF RP +   F  +  V+ + +++GVF CG P
Sbjct: 1467 RHFQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCGPP 1517

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>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1553

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = -1

Query: 446  KRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQEL 267
            K+ Y  WVTR +  FEW   ++ EV E D   ++ +H + + + ++ D R+ ++ + +  
Sbjct: 1417 KKIYFIWVTRTQRQFEWLADIIREVEENDHRDLVSVHIYITQLAEKFDLRTTMLYICERH 1476

Query: 266  NHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                    + +G    THF RP +   F  +  V+ + +++GVF CG P
Sbjct: 1477 FQKVLNRSLFTGLRSITHFGRPPFEPFFNSLQEVHPQVRKIGVFSCGPP 1525

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>NOX5_HUMAN (Q96PH1) NADPH oxidase 5 (EC 1.6.3.-)|
          Length = 765

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
 Frame = -1

Query: 428 WVTREEGSFEWFRGV-----MNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQELN 264
           W+ R++ SFEWF  +     M++  E      +ELH + +S   + D ++  + M  +L 
Sbjct: 638 WINRDQRSFEWFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQMALDLL 697

Query: 263 HAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCGEP 123
             K+  D ++G   +T   RP+W  VF+++A   +  +V VF+CG P
Sbjct: 698 ANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKG-KVQVFFCGSP 743

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>DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1475

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
 Frame = -1

Query: 446  KRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQEL 267
            K+ Y  W+      FEWF  V+ +V +KD   V+E+H   +  + + D R+ ++ + +  
Sbjct: 1337 KKVYFLWICPSHKHFEWFIDVLRDVEKKDVTNVLEIHIFITQFFHKFDLRTTMLYICENH 1396

Query: 266  NHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHEN-QRVGVFYCG 129
                    I +G     HF RP+  S  K +   H    ++GVF CG
Sbjct: 1397 FQRLSKTSIFTGLKAVNHFGRPDMSSFLKFVQKKHSYVSKIGVFSCG 1443

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>CY24B_MOUSE (Q61093) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 be
          Length = 570

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
 Frame = -1

Query: 446 KRAYSYWVTREEGSFEWFRGVMN----EVAEKDKDGVIELHNHCSSVYQEGDARSALIVM 279
           K+ Y YW+ R+  +FEWF  ++     ++ E++    +  + + +  + E  A    +  
Sbjct: 437 KKIYFYWLCRDTHAFEWFADLLQLLETQMQERNNANFLSYNIYLTG-WDESQANHFAV-- 493

Query: 278 LQELNHAKKGVDILSGTSVKTHFARPNWRSVFKRIAVNHENQRVGVFYCG 129
                H  +  D+++G   KT + RPNW + FK IA  H N  +GVF CG
Sbjct: 494 -----HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASEHPNTTIGVFLCG 538

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>DUOX2_RAT (Q9ES45) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)|
            (NADH/NADPH thyroid oxidase THOX2) (Thyroid oxidase 2)
            (Large NOX 2) (Long NOX 2)
          Length = 1517

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
 Frame = -1

Query: 452  MTKRAYSYWVTREEGSFEWFRGVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQ 273
            + K+ Y  WVTR +  FEW   ++ EV E     ++ +H + + + ++ D R+ ++ + +
Sbjct: 1379 LCKKIYFIWVTRTQRQFEWLADIIREVEENGSRDLVSVHIYITQLAEKFDLRTTMLYICE 1438

Query: 272  ELNHAKKGVDILSGTSVKTHFARPNWRSVFKRI-AVNHENQRVGVFYCGEP 123
                      + +G    THF RP +      +  V+ +  ++GVF CG P
Sbjct: 1439 RHFQKVLNRSLFTGLRSVTHFGRPPFELFLDSLQEVHPQVHKIGVFSCGPP 1489

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>Y2660_AGRT5 (Q8UC38) UPF0235 protein Atu2660/AGR_C_4821|
          Length = 112

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -1

Query: 368 EKDKDGVIELHNHCSSVYQEGDARSALIVML-QELNHAKKGVDILSGTSVKTHFAR---- 204
           E+D DG   L    S+V + G A  ALIV+L ++L   K  +  +SG + +    R    
Sbjct: 40  EQDADGNAHLKARVSAVPEGGKANKALIVLLAKKLGLPKSSITFISGETARKKILRIDTD 99

Query: 203 -PNWRSVFKRIA 171
             ++  +FK++A
Sbjct: 100 PEDFEKLFKKLA 111

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>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +1

Query: 241 ISTPFLAWLSSWSMTMSADRASPSWYTLEQWLWSSITPSLSFSATSFITPLNHSKEPSSL 420
           I TP ++  SS S   S+   +  W +L     +S TP+LS SATS  +  +    PSSL
Sbjct: 116 IITPSMSIFSSTSPMSSSSSITSEWSSL-----TSTTPTLSSSATSLSSSWSSLSSPSSL 170

Query: 421 V 423
           +
Sbjct: 171 L 171

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>RPOB_DECAR (Q47JB0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1427

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           +V C    +     PG+V  +D  PGQ +     ++ FLEHDD
Sbjct: 708 LVTCREKGETILAEPGRVQYMDVAPGQIVSVAASLIPFLEHDD 750

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>CPSM_RAT (P07756) Carbamoyl-phosphate synthase [ammonia], mitochondrial|
            precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase
            I) (CPSase I)
          Length = 1500

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 157  FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 255
            F W     ++TLRQLG+   V+   P+ +ST F
Sbjct: 992  FDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDF 1024

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>CPSM_MOUSE (Q8C196) Carbamoyl-phosphate synthase [ammonia], mitochondrial|
            precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase
            I) (CPSase I)
          Length = 1500

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 157  FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 255
            F W     ++TLRQLG+   V+   P+ +ST F
Sbjct: 992  FDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDF 1024

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>CPSM_HUMAN (P31327) Carbamoyl-phosphate synthase [ammonia], mitochondrial|
            precursor (EC 6.3.4.16) (Carbamoyl-phosphate synthetase
            I) (CPSase I)
          Length = 1500

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 157  FSWLTAMRLKTLRQLGRAKWVLTLVPDRISTPF 255
            F W     ++TLRQLG+   V+   P+ +ST F
Sbjct: 992  FDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDF 1024

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>RPOB_NITOC (Q3J8Q7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1359

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 129 AAVEDPNALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA E+   + ++V C    + + + P KV  +D  P Q +     ++ FLEHDD
Sbjct: 629 AADEEGRLIDMLVSCRHKNEFTLLPPEKVQYIDVSPKQIVSVAASLIPFLEHDD 682

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>MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)|
          Length = 1020

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 301 LGPRSSSCSRNSTMPRRGSIFCPGPASRP--TLPGLTGEASSSASQST 164
           LGP +SSC R    P+ G++   GP   P  +LP  +G+     +Q T
Sbjct: 706 LGPSNSSCPR--VFPQPGTLMSMGPGHAPVSSLPSSSGQQDRGVAQFT 751

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>MAD26_ORYSA (Q8L887) MADS-box transcription factor 26 (OsMADS26) (FDRMADS3)|
           (RMADS220)
          Length = 222

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 389 GVMNEVAEKDKDGVIELHNHCSSVYQEGDARSALIVMLQELNHAKKGVDILSGTSVKTH 213
           G M E+ E+ K    E  N C    Q  D +   +V+ QE+N  +KG+  + G     H
Sbjct: 61  GTMEELIERYKSASGEQANACGD--QRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEH 117

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>TOP6A_METTH (O27089) Type II DNA topoisomerase VI subunit A (EC 5.99.1.3)|
          Length = 353

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 189 ASPVRPGKVGLDA----GPGQNIDPLLGMVEFLEHDDER 293
           A  VR G + +DA      G NI P +  VEF++HD ER
Sbjct: 143 ALTVREGDIEIDALRSGKSGYNISPTIDEVEFVDHDVER 181

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>PDLI2_HUMAN (Q96JY6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)|
           (PDZ-LIM protein)
          Length = 352

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = -2

Query: 292 RSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSAS 173
           RSS  S  S  PR GS F P P+S      LTGEA+ S S
Sbjct: 119 RSSYSSPTSLSPRAGSPFSPPPSS----SSLTGEAAISRS 154

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>RPOB_LEGPN (O86094) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           N L  +V C    + S   P K+  +D  P Q +     ++ FLEHDD
Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690

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>RPOB_LEGPL (Q5WZL9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           N L  +V C    + S   P K+  +D  P Q +     ++ FLEHDD
Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690

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>RPOB_LEGPH (Q5ZYQ0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           N L  +V C    + S   P K+  +D  P Q +     ++ FLEHDD
Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690

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>RPOB_LEGPA (Q5X866) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           N L  +V C    + S   P K+  +D  P Q +     ++ FLEHDD
Sbjct: 643 NILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASLIPFLEHDD 690

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>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2|
          Length = 352

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/40 (50%), Positives = 21/40 (52%)
 Frame = -2

Query: 292 RSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGEASSSAS 173
           RSS  S  S  PR GS F P P S P    L GEA+ S S
Sbjct: 119 RSSYSSPTSLSPRAGSPFSPPPFSSP----LAGEAAISRS 154

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>RS9_HALMA (P05763) 30S ribosomal protein S9P (HmaS9) (HS3) (F1)|
          Length = 131

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +3

Query: 207 GKVGLDAGPGQNIDPLLGMVEFLE-----HDDERGP-SIALLVHARAVVVELDHSILVLL 368
           G+V +D+ P + +DP L  ++ LE      DD RG   + + V    V+ + D +   + 
Sbjct: 22  GRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVEGGGVMGQADAARTAIA 81

Query: 369 GHLVHHPSE-PLKGAFLPCD 425
             LV H ++  L+ AF+  D
Sbjct: 82  RGLVDHTNDAELRDAFMEFD 101

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>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1469

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 186 DASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDDERGPSIALLVHARAVVVELDHSILV 362
           D   V+P +V  +D  P Q I P   ++ FLEHDD     +   +  +AV +    + LV
Sbjct: 722 DIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGSNMQRQAVPLIFTQAPLV 781

Query: 363 LLG 371
             G
Sbjct: 782 GTG 784

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>PROB_BIFLO (Q8G4T9) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 377

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +3

Query: 81  VKSADNCRSCATXNRLAAVEDPNALILMVDCDALEDASPVRPGKVGLDAGPGQNIDPLLG 260
           ++  DN R  A    L   E   AL+L+ D DAL  A P +PG   ++  P  N+   LG
Sbjct: 156 IRFGDNDRLSALVANLVRAE---ALVLLTDVDALYTAPPSQPGSRRVEYVP--NVIDALG 210

Query: 261 MVE 269
            ++
Sbjct: 211 DIQ 213

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>RPOB_FUSNN (Q8RHI6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1184

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 NALILMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           N L  +V C    +   + P +V  +D  P Q +    G++ FLEHDD
Sbjct: 586 NKLQGLVVCRYGHEIVEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDD 633

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>Y396_HELPY (O25157) Hypothetical protein HP0396|
          Length = 616

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 147 NALILMVDCDALEDASP--VRPGKVGLDAGPGQN 242
           NALI    CDAL+ ASP     GK+G+DA    N
Sbjct: 420 NALISQGVCDALDHASPEYAMGGKLGIDATSKSN 453

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>Y396_HELPJ (Q9ZKF3) Hypothetical protein jhp_0985|
          Length = 616

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 147 NALILMVDCDALEDASP--VRPGKVGLDAGPGQN 242
           NALI    CDAL+ ASP     GK+G+DA    N
Sbjct: 420 NALISQGVCDALDHASPEYAMGGKLGIDATSKSN 453

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>YDDE_ECOLI (P37757) Protein yddE (ORFB)|
          Length = 297

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 198 VRPGKVGLDAGPGQNIDPLLGMVEFLEHDDERGPSIALLVHARAVVVELDHSILVLLGH 374
           +RPGK   D   G+   P +G+VE     +  GP  A LVH    V+  D ++L + GH
Sbjct: 201 IRPGKNETD---GRMFSPAIGIVEDPVTGNANGPMGAWLVHHN--VLPHDGNVLRVKGH 254

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>YDDE_ECO57 (P58292) Protein yddE|
          Length = 297

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 198 VRPGKVGLDAGPGQNIDPLLGMVEFLEHDDERGPSIALLVHARAVVVELDHSILVLLGH 374
           +RPGK   D   G+   P +G+VE     +  GP  A LVH    V+  D ++L + GH
Sbjct: 201 IRPGKNETD---GRMFSPAIGIVEDPVTGNANGPMGAWLVHHN--VLPHDGNVLRVKGH 254

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>RPOB_TREDE (Q73JJ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1167

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 165 VDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           V C  L D + + P  +  +D  P Q I     ++ FLEHDD
Sbjct: 592 VSCRKLGDYTSISPKDIQYMDVSPKQIISVSASLIPFLEHDD 633

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>RPOB_BORPA (Q7W2G9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1378

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 129 AAVEDPNALIL-MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA++D    +  +V C    +     PG V  +D  P Q +     ++ FLEHDD
Sbjct: 635 AALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDD 689

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>RPOB_BORBR (Q7WRD9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1378

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 129 AAVEDPNALIL-MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA++D    +  +V C    +     PG V  +D  P Q +     ++ FLEHDD
Sbjct: 635 AALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDD 689

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>VGLY_JUNIN (P26313) Glycoprotein polyprotein [Contains: Glycoprotein G1;|
           Glycoprotein G2]
          Length = 485

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 271 SWSMTMSADRASPSWYTLEQWLWSSITPSLSFSATSFITPLNHSKE 408
           SWS+T S+ + +P  Y LE+W+  +       +       LNH  E
Sbjct: 255 SWSLTDSSGKDTPGGYCLEEWMLVAAKMKCFGNTAVAKCNLNHDSE 300

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>HMH2_DUGTI (Q00401) Homeobox protein DTH-2|
          Length = 363

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 18/53 (33%), Positives = 32/53 (60%)
 Frame = +1

Query: 226 LVPDRISTPFLAWLSSWSMTMSADRASPSWYTLEQWLWSSITPSLSFSATSFI 384
           L P+R STP +  L+S+S   S D  S S+Y+ +  L++   P ++ S++ F+
Sbjct: 304 LFPERKSTPTMGPLTSYSFGQSMDSIS-SFYSPDFSLYNCAHPYMAASSSYFM 355

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>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 295 PRSSSCSRNSTMPRRGSIFCPGPASRPTLPGLTGE 191
           PR + C + S  P       PGP  RP  PG  G+
Sbjct: 374 PRGNPCDQCSAQPNHCPSGPPGPRGRPGPPGFPGQ 408

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>RPOB_BORPE (Q7W0R9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1370

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 129 AAVEDPNALIL-MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA++D    +  +V C    +     PG V  +D  P Q +     ++ FLEHDD
Sbjct: 627 AALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDD 681

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>RPOB_AQUAE (O67762) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1468

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 186 DASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           D   V+P +V  +D  P Q I P   ++ FLEHDD
Sbjct: 722 DIRLVKPEQVEYIDVSPRQVISPSSSLIPFLEHDD 756

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>RPOB_BRAJA (Q89J74) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1372

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           +V C    +  PV P KV  +D  P Q +     ++ FLE+DD
Sbjct: 642 LVVCRHAGEVLPVTPDKVDYMDVSPKQLVSVAAALIPFLENDD 684

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>CYDA_BACSU (P94364) Cytochrome d ubiquinol oxidase subunit 1 (EC 1.10.3.-)|
           (Cytochrome d ubiquinol oxidase subunit I)
          Length = 468

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 166 LTAMRLKTLRQLGRAKWVLTLVPDRISTPFLAWLSSWSMT 285
           L  + L   ++L  +KW L ++   IS PFLA  + W MT
Sbjct: 346 LGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMT 385

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>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5|
          Length = 317

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -2

Query: 298 GPRSSSCSRNSTMPR-----RGSIFCPGPASRPTLPGLTGEA 188
           GP++S+C      P      RG    PGPA +P  PG+ G A
Sbjct: 83  GPQASNCPAGPPGPPGASGDRGLDGQPGPAGKPGQPGVAGPA 124

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>RPOB_NITWN (Q3SSY0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1380

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 MVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           +V C    +  PV P KV  +D  P Q +     ++ FLE+DD
Sbjct: 647 LVVCRHAGEVLPVTPDKVDFMDVSPKQLVSVAAALIPFLENDD 689

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>RPOB_BURPS (Q63Q03) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 129 AAVEDPNALI-LMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA+ D  AL+  +V      +   V P ++  +D  P Q +     ++ FLEHDD
Sbjct: 627 AAIGDDGALVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDD 681

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>RPOB_BURP1 (Q3JMQ3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 129 AAVEDPNALI-LMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA+ D  AL+  +V      +   V P ++  +D  P Q +     ++ FLEHDD
Sbjct: 627 AAIGDDGALVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDD 681

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>RPOB_BURMA (P0C151) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 129 AAVEDPNALI-LMVDCDALEDASPVRPGKVG-LDAGPGQNIDPLLGMVEFLEHDD 287
           AA+ D  AL+  +V      +   V P ++  +D  P Q +     ++ FLEHDD
Sbjct: 627 AAIGDDGALVDELVSSREAGETMMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDD 681

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>RL2_NITEU (Q82X85) 50S ribosomal protein L2|
          Length = 278

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 237 QNIDPLLGMVEFLEHDDERGPSIALLVHA----RAVVVELDHSILVLLGHLVHHPSEPLK 404
           +N D +   VE +E+D  R   IALL +A    R ++   D   + +  +LV   S P+K
Sbjct: 70  RNKDDIPAKVERIEYDPNRSAYIALLCYADGERRYIIAAKD---IEVGSYLVSGSSSPIK 126

Query: 405 -GAFLPCDPVGVGPLGH 452
            G  +P   + VG + H
Sbjct: 127 MGNAMPIRNIPVGSVIH 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,317,257
Number of Sequences: 219361
Number of extensions: 1439923
Number of successful extensions: 6274
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 5601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6246
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result