ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein) 52 1e-06
2TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein) 52 1e-06
3TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 50 8e-06
4TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p... 49 2e-05
5NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA... 40 0.006
6NRTN_MOUSE (P97463) Neurturin precursor 39 0.018
7ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E... 35 0.20
8ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR) 35 0.20
9ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC) 35 0.20
10ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P... 35 0.20
11PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-... 34 0.35
12PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 34 0.35
13PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi... 34 0.35
14PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 34 0.45
15PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 34 0.45
16PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 34 0.45
17PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 34 0.45
18PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 34 0.45
19ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur... 34 0.45
20ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu... 34 0.45
21SXL_MEGSC (O01671) Sex-lethal homolog 34 0.45
22ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu... 34 0.45
23PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 34 0.45
24PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 34 0.45
25PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi... 34 0.45
26PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi... 34 0.45
27PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi... 34 0.45
28PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi... 34 0.45
29PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi... 34 0.45
30CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 33 0.59
31EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb... 33 0.59
32EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (... 33 0.59
33EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (... 33 0.59
34PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 33 0.78
35PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi... 33 0.78
36YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 33 1.0
37PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 33 1.0
38ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo... 32 1.3
39MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote... 32 1.3
40PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g... 32 1.3
41PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi... 32 1.3
42ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha... 32 1.3
43ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 32 1.3
44RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi) 32 1.3
45RSD1_SCHPO (O13845) RNA-binding protein rsd1 32 1.3
46ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha... 32 1.3
47ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB) 32 1.3
48ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2 32 1.3
49ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E... 32 1.3
50RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p... 32 1.3
51RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p... 32 1.3
52ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro... 32 1.7
53RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 32 1.7
54RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 32 1.7
55PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 32 2.3
56ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur... 31 2.9
57ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec... 31 2.9
58RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 31 3.8
59RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 31 3.8
60RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 31 3.8
61RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 31 3.8
62NOL3_HUMAN (O60936) Nucleolar protein 3 (Apoptosis repressor wit... 31 3.8
63SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 31 3.8
64PPE58_MYCTU (Q50702) Hypothetical PPE-family protein PPE58 31 3.8
65NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul... 31 3.8
66PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi... 31 3.8
67ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 30 5.0
68NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot... 30 5.0
69RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri... 30 5.0
70ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 30 5.0
71NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr... 30 5.0
72YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 30 5.0
73NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr... 30 5.0
74NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr... 30 5.0
75SERR_DROME (P18168) Serrate protein precursor (Protein beaded) 30 6.6
76ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 30 6.6
77NAM8_YEAST (Q00539) Protein NAM8 30 6.6
78CARA_SYMTH (Q67Q55) Carbamoyl-phosphate synthase small chain (EC... 30 6.6
79RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 30 8.6
80NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 30 8.6
81RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 30 8.6
82MUSK_HUMAN (O15146) Muscle, skeletal receptor tyrosine protein k... 30 8.6
83C1QT8_HUMAN (P60827) Complement C1q tumor necrosis factor-relate... 30 8.6
84SAP49_SCHPO (O14102) Spliceosome-associated protein 49 30 8.6
85NUCB2_HUMAN (P80303) Nucleobindin-2 precursor (DNA-binding prote... 30 8.6 
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G I  +RV  EKG+ F+R+STH  AA AI   NG  + G  +KC WG
Sbjct: 229 GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 275
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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G I  +RV  EKG+ F+R+STH  AA AI   NG  + G  +KC WG
Sbjct: 246 GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G I  +RV  +KG+ F+R+S+H  AA AI   NG  + G  +KC WG
Sbjct: 238 GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/78 (21%), Positives = 29/78 (37%)
 Frame = -1

Query: 660 IEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGNXXXXXXXXXXXXXX 481
           ++ +   + KG+GF+ +    +A  AIQ   G  + G+ I+ +W                
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197

Query: 480 PIASYQPVAMAGVPQGFT 427
              SY  V     P   T
Sbjct: 198 KQLSYDEVVSQSSPNNCT 215
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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G I  +RV  +KG+ F+R+++H  AA AI   NG  + G  +KC WG
Sbjct: 238 GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/78 (21%), Positives = 29/78 (37%)
 Frame = -1

Query: 660 IEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGNXXXXXXXXXXXXXX 481
           ++ +   + KG+GF+ +    +A  AIQ   G  + G+ I+ +W                
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197

Query: 480 PIASYQPVAMAGVPQGFT 427
              SY  V     P   T
Sbjct: 198 KQLSYDEVVNQSSPSNCT 215
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>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G I  VR+   K  GF+++    +A  +IQ   G +V G PI+ SWG
Sbjct: 384 GPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWG 430
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>NRTN_MOUSE (P97463) Neurturin precursor|
          Length = 195

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +3

Query: 324 APRIPGPRGRAGQQSARLRPGSRPAASDKPEARL 425
           A RIPGPR RAG +  R RPG+RP    + E R+
Sbjct: 77  AARIPGPRRRAGPRRRRARPGARPCGLRELEVRV 110
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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G +E  ++ ++K      G+GF+ Y T  +A  AI   NGL ++ K IK S+
Sbjct: 43  IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSY 95



 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + E+A+AI   NG  +  K ++ S+
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSF 319
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>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G +E  ++ ++K      G+GF+ Y T  +A  AI   NGL ++ K IK S+
Sbjct: 43  IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  K ++ S+
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
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>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ YS   +A  AI   NGL ++ K IK S+
Sbjct: 62  IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANG 565
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG
Sbjct: 308 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
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>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ YS   +A  AI   NGL ++ K IK S+
Sbjct: 62  IGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANG 565
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG
Sbjct: 308 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
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>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G+I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 29.6 bits (65), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + +GFGF+ +  H +A  A+   NG  + GK I
Sbjct: 229 KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
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>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +ST  EA  AI   N  +V GKP+
Sbjct: 359 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 391



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +   G A  AI   NG+++ G+ I
Sbjct: 163 KSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 195



 Score = 29.6 bits (65), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           KGFGF+ Y  H +A  A++  N   + G+ +
Sbjct: 258 KGFGFVNYEKHEDAVKAVEALNDSELNGEKL 288
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>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 651 VRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           + V Q KGFG + +S+  EA  A+   NG VV  KP+  + G
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLG 376



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           G  E V+V ++     KGFGF+RY TH  A  A+   +G  + GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 30.0 bits (66), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           + KGFGF+ +  H +A  A+   NG  + GK
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +  H +A  A+   NG  + GK I
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +  H +A  A+   NG  + GK I
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +  H +A  A+   NG  + GK I
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +  H +A  A+   NG  + GK I
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G +E V V  +K      GFGF+  ST  E   A Q  NG    G+P++ + G
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAG 175
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>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA++ V++ ++      KG+GF+  + + EAA+AI+  NG  +  + ++ S+
Sbjct: 462 GAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 513



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           Q  G+GF+ Y    +A  A+ + NGL ++ K IK S+
Sbjct: 237 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSF 273
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>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G I   R+ ++       G+GF+ + +  +A  AI   NG+ VR K IK S+
Sbjct: 101 IGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSF 153
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>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA++ V++ ++      KG+GF+  + + EAA+AI+  NG  +  + ++ S+
Sbjct: 426 GAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 477



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           Q  G+GF+ Y    +A  A+ + NGL ++ K IK S+
Sbjct: 201 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSF 237
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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G+I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ Y  H +A  A++  NG  + GK I
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363



 Score = 33.9 bits (76), Expect = 0.45
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           KG+GF+ + TH  A  AI+  NG+++ G+ +
Sbjct: 138 KGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +  H +A  A+   NG  + GK I
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
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>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 651 VRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           + V Q KGFG + +S+  EA  A+   NG +V  KP+  + G
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           G  E V+V ++     KGFGF+RY TH  A  A+   +G  + GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
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>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 651 VRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           + V Q KGFG + +S+  EA  A+   NG +V  KP+  + G
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           G  E V+V ++     KGFGF+RY TH  A  A+   +G  + GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
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>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 651 VRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           + V Q KGFG + +S+  EA  A+   NG +V  KP+  + G
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           G  E V+V ++     KGFGF+RY TH  A  A+   +G  + GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
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>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 651 VRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           + V Q KGFG + +S+  EA  A+   NG +V  KP+  + G
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           G  E V+V ++     KGFGF+RY TH  A  A+   +G  + GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
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>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 651 VRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           + V Q KGFG + +S+  EA  A+   NG +V  KP+  + G
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376



 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           G  E V+V ++     KGFGF+RY TH  A  A+   +G  + GK
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGN 523
           G I  +++   KG GF++YS    A  AI    G +V    I+ +WG+
Sbjct: 321 GRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGH 368
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>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363



 Score = 33.5 bits (75), Expect = 0.59
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + +GFGF+ Y  H EA  A+   NG  V G+ I
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
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>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363



 Score = 32.7 bits (73), Expect = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + +GFGF+ Y  H EA  A+   NG  V G+ +
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
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>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 666 GAIEXVRVQQE----KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           G I   +V  E    KGFGF+ +S+  EA  A+   NG +V  KP+
Sbjct: 318 GTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363



 Score = 33.5 bits (75), Expect = 0.59
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + +GFGF+ Y  H EA  A+   NG  V G+ I
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           +G+GF+ + TH  A  AIQ  NG+++  + +
Sbjct: 138 RGYGFVHFETHEAANRAIQTMNGMLLNDRKV 168
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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 636 EKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           EKG  FI+Y TH +AA+ I        +G+ ++  WG
Sbjct: 374 EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 410



 Score = 30.0 bits (66), Expect = 6.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G+GF+ +++  +A  A+    G  + G+P++ +W
Sbjct: 202 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 236
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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           +GFGF+ YS   EA LA++  NG ++  KP+
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 398
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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G I  V++   KG GF+++     A +AI    G  +    I+ SWG
Sbjct: 327 GEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWG 373
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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ ++   EA  A+   NG VV  KP+
Sbjct: 325 RSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           KG+GF+ + T   A  +I   NG+++ GK +
Sbjct: 130 KGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160
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>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 62  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 314 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 365
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>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 642 QQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGN 523
           Q  +GF F+ ++TH EAA A++      + G+ +   W N
Sbjct: 683 QSTRGFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWAN 722
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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ +ST  EA  A++  +G +  GKP+
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374
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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           Q KG+GF++Y+    A  AI+  NG+++  K +
Sbjct: 162 QSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = -1

Query: 669 VGAIEXVRV------QQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGN 523
           +G +  VRV      ++  G+G++ ++   +AA AIQ  N + + GKPI+  + +
Sbjct: 59  MGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSH 113
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>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 74  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 126



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 326 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
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>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 62  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 301 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352
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>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)|
          Length = 165

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           KG+  + Y TH +A  A +  NG  + G+ I+  W
Sbjct: 114 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148
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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -1

Query: 666 GAIEXVRVQQE-----KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGN 523
           G IE V +Q++     KGFG+I+Y     A  A++  NG  + G+ ++   GN
Sbjct: 364 GDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGN 416
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>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 69  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121



 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 321 GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372
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>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 62  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
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>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 62  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
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>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 669 VGAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           +G IE  ++ ++K      G+GF+ Y    +A  AI   NGL ++ K IK S+
Sbjct: 62  IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           GA+  V+V ++      KGFGF+  + + EAA+AI   NG  +  + ++ S+
Sbjct: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
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>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           KG+  + Y T+ EA  A++  NG  + G+PI   W
Sbjct: 114 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
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>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           KG+  + Y T+ EA  A++  NG  + G+PI   W
Sbjct: 114 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G +E V V  +K      GFGF+  S+  E   A Q  NG  + G+P++ + G
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG 167
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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           G IE +++  +      KG+GFI +S    A  A++  NG  + G+P+K
Sbjct: 274 GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -1

Query: 666 GAIEXVRVQQE------KGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           G IE +++  +      KG+GFI +S    A  A++  NG  + G+P+K
Sbjct: 274 GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           + KGFGF+ Y+T  EA  A+   N  ++ GKP+
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G +E V V  +K      GFGF+  ST  E   A Q  NG  + G+ I+ + G
Sbjct: 112 GNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAG 164



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCS 532
           + +GFGF+ YS+  E   AI   NG+ + G+ I+ S
Sbjct: 247 RSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -1

Query: 666 GAIEXVRVQQEK------GFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWG 526
           G +E V V  +K      GFGF+  ST  E   A Q  NG  + G+ I+ + G
Sbjct: 111 GNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAG 163



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCS 532
           + +GFGF+ YS+  E   AI   NG+ + G+ I+ S
Sbjct: 246 RSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           +  GFGF+ +S+  E   AIQ  N  V+ G+ I+
Sbjct: 223 KSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIR 256
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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 427  GSRASGLSEAAGLEPGRSRADCWPARPRGPGIRGATRCWLPGP 299
            G   S  S+A+G  PG S A  W   P  PG  G +  ++P P
Sbjct: 1545 GFSPSAASDASGFSPGYSPA--WSPTPGSPGSPGPSSPYIPSP 1585
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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 427  GSRASGLSEAAGLEPGRSRADCWPARPRGPGIRGATRCWLPGP 299
            G   S  S+A+G  PG S A  W   P  PG  G +  ++P P
Sbjct: 1545 GFSPSAASDASGFSPGYSPA--WSPTPGSPGSPGPSSPYIPSP 1585
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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 427 GSRASGLSEAAGLEPGRSRADCWPARPRGPGIRGATRCWLPGP 299
           G   S  S+A+G  PG S A  W   P  PG  G +  ++P P
Sbjct: 42  GFSPSAASDASGFSPGYSPA--WSPTPGSPGSPGPSSPYIPSP 82
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>NOL3_HUMAN (O60936) Nucleolar protein 3 (Apoptosis repressor with CARD)|
           (Muscle-enriched cytoplasmic protein) (Myp) (Nucleolar
           protein of 30 kDa) (Nop30)
          Length = 219

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -3

Query: 517 NPAWDVF*AAAAPDCFLSTSSNGRRATRLHGSRASGLSEAAGL-EPGRSRADCWPARPRG 341
           +PAWD   A       L   + GRR     G  A G  E   L  PG  RA   P R   
Sbjct: 88  DPAWDWQHATGTAAMTLHAQATGRRRHPARGPHAPGCPELQTLTRPGALRA---PRRCNP 144

Query: 340 PGIRGATRCWLPGPVRRL 287
              R  ++ W   P++RL
Sbjct: 145 GPRRSQSQSWKLRPLKRL 162
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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           Q +G+GF+ + +  +A  AI++ N + + GKPI+
Sbjct: 52  QHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIR 85
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>PPE58_MYCTU (Q50702) Hypothetical PPE-family protein PPE58|
          Length = 232

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 312 QQRVAPRIPGPRGRAGQQSARLRPG-SRPAASDKPEARL 425
           Q+RV PR  G RG AGQQ  R RPG S   + D P  ++
Sbjct: 174 QERVGPR--GRRGLAGQQQCRGRPGPSLRCSHDTPRFQM 210
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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMAN--GLVVRGKPIKCSWG 526
           G +  +R  QEK   F+ +     A    +M+N  GLV+R + +K  WG
Sbjct: 346 GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWG 394
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>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPI 541
           +GFGF+ YS   EA  A+   NG ++  KP+
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCS 532
           + +GFGF+ YS+  E   AI+  +G+ + G+ I+ S
Sbjct: 233 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
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>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           G    V + ++KGFGFIR  T   A +A    + + +RGK ++
Sbjct: 103 GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 145
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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 642 QQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           +Q KGFGF+R+    +A  A+   +G +V G+ ++
Sbjct: 57  RQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELR 91
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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCS 532
           + +GFGF+ YS+  E   AI+  +G+ + G+ I+ S
Sbjct: 227 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
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>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           G    V + ++KGFGFIR  T   A +A    + + +RGK ++
Sbjct: 100 GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 142
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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           +GFGF+ +    +A  AI++ N + + GKPIK
Sbjct: 54  QGFGFVEFMGEEDADYAIKILNMIKLYGKPIK 85
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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           G    V + ++KGFGFIR  T   A +A    + + +RGK ++
Sbjct: 98  GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 140
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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 666 GAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           G    V + ++KGFGFIR  T   A +A    + + +RGK ++
Sbjct: 98  GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 140
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>SERR_DROME (P18168) Serrate protein precursor (Protein beaded)|
          Length = 1404

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
 Frame = -3

Query: 481  PDCF----LSTSSNGRRATRLHGSRASGLSEAAGLEPGRSRADCWPARP----RGPGIRG 326
            P+C+    LS SSN     + H      LSE     P   R DC    P      P +  
Sbjct: 1013 PNCYKVDPLSKSSNLSGVCKQHEVCVPALSETCLSSPCNVRGDCRALEPSRRVAPPRLPA 1072

Query: 325  ATRCWLPGPVRRLPEPDVGAAAHVLQL--VYRGLKEEGICSV 206
             + CW   P + +   +      +L L  V +G   EG+CS+
Sbjct: 1073 KSSCW---PNQAVVNENCARLTILLALERVGKGASVEGLCSL 1111
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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGK 547
           Q +GFGF+  ST  EA  A++M N   V G+
Sbjct: 175 QSRGFGFVTMSTVEEAEKAVEMYNRYDVNGR 205
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>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 633 KGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           KG+GF++++   E  LA+    G+ + G+ IK
Sbjct: 205 KGYGFVKFTNSDEQQLALSEMQGVFLNGRAIK 236
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>CARA_SYMTH (Q67Q55) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 363

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
 Frame = -3

Query: 445 RATRLHGSRASGLSEAA-GLEPGRSRADCWPARPRGPGIRGATRC-------WLPGPVRR 290
           R  R HG+    ++    G EPG ++   W    R   + GA R         +PGP  R
Sbjct: 112 RHLRSHGTMRGVIATLPEGAEPGPAQVAAWVETARAFRLEGAVRSVATAAPYRIPGPGPR 171

Query: 289 LPEPDVGAAAHVL-QLVYRG 233
           +   D GA  ++L +L  RG
Sbjct: 172 VVAVDFGAKENILRELTARG 191
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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           + KG+GFI +S    A  A++  NG  + G+P++
Sbjct: 302 RSKGYGFITFSDSECARRALEQLNGFELAGRPMR 335
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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = -1

Query: 666 GAIEXVRV------QQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSWGN 523
           G +  VR+      +Q KGFG++++S   +A  A+    G  +  +P++  + +
Sbjct: 291 GEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344
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>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 669 VGAIEXVRVQQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIK 538
           V  ++    Q+ +GFGFI ++    A++A++  NG  + G+ I+
Sbjct: 35  VVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIR 78
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>MUSK_HUMAN (O15146) Muscle, skeletal receptor tyrosine protein kinase|
           precursor (EC 2.7.10.1) (Muscle-specific tyrosine
           protein kinase receptor) (Muscle-specific kinase
           receptor) (MuSK)
          Length = 869

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 180 SGSNYFSVSCTIVVRAFHLLVAGLCFFIFLVITVLYC 70
           S S+ FSVS T  +     +++    F+ L IT LYC
Sbjct: 481 SSSSSFSVSPTYSMTVIISIMSSFAIFVLLTITTLYC 517
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>C1QT8_HUMAN (P60827) Complement C1q tumor necrosis factor-related protein 8|
           precursor
          Length = 262

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 361 WPARPRGPGIRGATRCWLPGPVRRLPEPDV 272
           WP  PR P +      W PGP  R+ + D+
Sbjct: 18  WPGLPRRPCVHCCRPAWPPGPYARVSDRDL 47
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>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 639 QEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKCSW 529
           + KG+GF+ Y +   A  AI+  N   +  KPI  S+
Sbjct: 138 RSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSY 174
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>NUCB2_HUMAN (P80303) Nucleobindin-2 precursor (DNA-binding protein NEFA)|
           (Gastric cancer antigen Zg4)
          Length = 420

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +1

Query: 52  RREILSTVQYSNDKKNKKTQSRDKQMKSSHDNST*NGKIVGTGEESQVR 198
           RRE L T+   N++K K+ +S+ ++MK  H+N   + K+   G + Q++
Sbjct: 188 RREYLKTL---NEEKRKEEESKFEEMKKKHEN---HPKVNHPGSKDQLK 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,578,836
Number of Sequences: 219361
Number of extensions: 1617719
Number of successful extensions: 5828
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 4813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5819
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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