ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC145967.3| Pan troglodytes BAC clone RP43-17M21 from 7, comp... 38 3.2
2gb|AC002385.1| Homo sapiens BAC clone CTA-222A16 from 7, complet... 38 3.2
3gb|AC146114.3| Pan troglodytes BAC clone RP43-22O2 from 7, compl... 38 3.2
4gb|AC010008.5| Drosophila melanogaster 3L BAC RP98-13N15 (Roswel... 38 3.2
5gb|AC023677.4| Drosophila melanogaster 3L BAC RP98-20I1 (Roswell... 38 3.2
6gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45... 38 3.2

>gb|AC145967.3| Pan troglodytes BAC clone RP43-17M21 from 7, complete sequence
          Length = 179148

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    ggaggctgtttgtttgcca 28
             |||||||||||||||||||
Sbjct: 10572 ggaggctgtttgtttgcca 10590



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>gb|AC002385.1| Homo sapiens BAC clone CTA-222A16 from 7, complete sequence
          Length = 201990

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     ggaggctgtttgtttgcca 28
              |||||||||||||||||||
Sbjct: 161212 ggaggctgtttgtttgcca 161194



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>gb|AC146114.3| Pan troglodytes BAC clone RP43-22O2 from 7, complete sequence
          Length = 176328

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ggaggctgtttgtttgcca 28
              |||||||||||||||||||
Sbjct: 106321 ggaggctgtttgtttgcca 106339



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>gb|AC010008.5| Drosophila melanogaster 3L BAC RP98-13N15 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 158719

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     aggctgtttgtttgccaca 30
              |||||||||||||||||||
Sbjct: 147728 aggctgtttgtttgccaca 147746



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>gb|AC023677.4| Drosophila melanogaster 3L BAC RP98-20I1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 143136

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    aggctgtttgtttgccaca 30
             |||||||||||||||||||
Sbjct: 45266 aggctgtttgtttgccaca 45284



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>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete
              sequence
          Length = 297381

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     aggctgtttgtttgccaca 30
              |||||||||||||||||||
Sbjct: 148878 aggctgtttgtttgccaca 148896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 520,226
Number of Sequences: 3902068
Number of extensions: 520226
Number of successful extensions: 30275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30269
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 58
effective length of database: 17,151,101,840
effective search space: 994763906720
effective search space used: 994763906720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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