>gb|BT023998.1| Zea mays clone EL01N0405D04 mRNA sequence
          Length = 1938

 Score =  119 bits (60), Expect = 1e-23
 Identities = 153/184 (83%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgcggtagcgcagcccgctctgctcgtaggccgccgcgtcgccatagttaaccggcttg 293
            |||||| | ||||||||| |||||||||| | ||||||||| |||| ||| || | ||||
Sbjct: 1656 ctgcggaatcgcagcccgttctgctcgtacggcgccgcgtccccatggttcacggccttg 1597

                                                                        
Query: 294  atctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcgttc 353
            |||||||||| ||||||   | | ||| | |||||||| ||||| ||||||||||| |||
Sbjct: 1596 atctccacgggacggcggctggtgtccccttcctgcacggctccgaagacgatctccttc 1537

                                                                        
Query: 354  gtcgcctcgcagctcggctcgtagaacgtctgcggccccagggagtactgcctgttgtgc 413
            || || |||||||||||||||||| | |||||||||||    ||||||||||||| ||| 
Sbjct: 1536 gttgcatcgcagctcggctcgtagtaggtctgcggcccggccgagtactgcctgtggtgt 1477

                
Query: 414  tgca 417
            ||||
Sbjct: 1476 tgca 1473

>dbj|AK122070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117I22, full
            insert sequence
          Length = 2126

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  tatccacctcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgt 375
            ||||||||||||| || || ||||||||||||||||| |||| |||||||||| ||||||
Sbjct: 1690 tatccacctcctggacagcaccaaagacgatctcgtttgtcgtctcgcagctctgctcgt 1631

                                                         
Query: 376  agaacgtctgcggccccagggagtactgcctgttgtgctgcaggt 420
            |||| || ||||| ||   ||||||||||||||  ||||||||||
Sbjct: 1630 agaaagtttgcgggcctgcggagtactgcctgtgctgctgcaggt 1586

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                           
Query: 318     tccacctcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgtag 377
               ||||||||||| || || ||||||||||||||||| |||| |||||||||| ||||||||
Sbjct: 8988602 tccacctcctggacagcaccaaagacgatctcgtttgtcgtctcgcagctctgctcgtag 8988661

                                                          
Query: 378     aacgtctgcggccccagggagtactgcctgttgtgctgcaggt 420
               || || ||||| ||   ||||||||||||||  ||||||||||
Sbjct: 8988662 aaagtttgcgggcctgcggagtactgcctgtgctgctgcaggt 8988704

>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0084K06
          Length = 177895

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                         
Query: 318   tccacctcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgtag 377
             ||||||||||| || || ||||||||||||||||| |||| |||||||||| ||||||||
Sbjct: 35920 tccacctcctggacagcaccaaagacgatctcgtttgtcgtctcgcagctctgctcgtag 35979

                                                        
Query: 378   aacgtctgcggccccagggagtactgcctgttgtgctgcaggt 420
             || || ||||| ||   ||||||||||||||  ||||||||||
Sbjct: 35980 aaagtttgcgggcctgcggagtactgcctgtgctgctgcaggt 36022

>dbj|AK064807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D18, full
            insert sequence
          Length = 1896

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                        
Query: 318  tccacctcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgtag 377
            ||||||||||| || || ||||||||||||||||| |||| |||||||||| ||||||||
Sbjct: 1541 tccacctcctggacagcaccaaagacgatctcgtttgtcgtctcgcagctctgctcgtag 1482

                                                       
Query: 378  aacgtctgcggccccagggagtactgcctgttgtgctgcaggt 420
            || || ||||| ||   ||||||||||||||  ||||||||||
Sbjct: 1481 aaagtttgcgggcctgcggagtactgcctgtgctgctgcaggt 1439

>gb|AY105416.1| Zea mays PCO138717 mRNA sequence
          Length = 683

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324 tcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgtagaacgtc 383
           |||||||| ||||| ||||||||||| ||||| || |||||||||||||||||| | |||
Sbjct: 665 tcctgcacggctccgaagacgatctccttcgttgcatcgcagctcggctcgtagtaggtc 606

                                             
Query: 384 tgcggccccagggagtactgcctgttgtgctgca 417
           ||||||||    ||||||||||||| ||| ||||
Sbjct: 605 tgcggcccggccgagtactgcctgtggtgttgca 572

>gb|BT017868.1| Zea mays clone EL01N0512C04.c mRNA sequence
          Length = 1270

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                       
Query: 318 tccacctcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgtag 377
           ||||||||||| ||||| |||||||||||||| || || | |||||||||| ||||||| 
Sbjct: 835 tccacctcctggaccgcgccaaagacgatctcctttgtaggctcgcagctctgctcgtaa 776

                                                      
Query: 378 aacgtctgcggccccagggagtactgcctgttgtgctgcaggt 420
           || ||||| || ||    |||||||||||||  ||||||||||
Sbjct: 775 aatgtctgtgggcctgcagagtactgcctgtgctgctgcaggt 733

>ref|XM_467614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1889

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  ttgatctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcg 350
            ||||||||||| || |||||   ||| || ||||||||||| ||||||||||| ||||||
Sbjct: 1582 ttgatctccacagcgcggcgcttgctgtctacctcctgcacggctccaaagacaatctcg 1523

                                                  
Query: 351  ttcgtcgcctcgcagctcggctcgtagaacgtctgcgg 388
            || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 1522 tttgttgcctcacagcttggctcatagaaagtttgcgg 1485

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                            
Query: 291      ttgatctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcg 350
                ||||||||||| || |||||   ||| || ||||||||||| ||||||||||| ||||||
Sbjct: 30449925 ttgatctccacagcgcggcgcttgctgtctacctcctgcacggctccaaagacaatctcg 30449866

                                                      
Query: 351      ttcgtcgcctcgcagctcggctcgtagaacgtctgcgg 388
                || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 30449865 tttgttgcctcacagcttggctcatagaaagtttgcgg 30449828

>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0072H09
          Length = 160541

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                          
Query: 291    ttgatctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcg 350
              ||||||||||| || |||||   ||| || ||||||||||| ||||||||||| ||||||
Sbjct: 130785 ttgatctccacagcgcggcgcttgctgtctacctcctgcacggctccaaagacaatctcg 130726

                                                    
Query: 351    ttcgtcgcctcgcagctcggctcgtagaacgtctgcgg 388
              || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 130725 tttgttgcctcacagcttggctcatagaaagtttgcgg 130688

>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0617A09
          Length = 134804

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                         
Query: 291   ttgatctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcg 350
             ||||||||||| || |||||   ||| || ||||||||||| ||||||||||| ||||||
Sbjct: 55973 ttgatctccacagcgcggcgcttgctgtctacctcctgcacggctccaaagacaatctcg 55914

                                                   
Query: 351   ttcgtcgcctcgcagctcggctcgtagaacgtctgcgg 388
             || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 55913 tttgttgcctcacagcttggctcatagaaagtttgcgg 55876

>dbj|AK101253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F08, full
            insert sequence
          Length = 1889

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  ttgatctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcg 350
            ||||||||||| || |||||   ||| || ||||||||||| ||||||||||| ||||||
Sbjct: 1582 ttgatctccacagcgcggcgcttgctgtctacctcctgcacggctccaaagacaatctcg 1523

                                                  
Query: 351  ttcgtcgcctcgcagctcggctcgtagaacgtctgcgg 388
            || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 1522 tttgttgcctcacagcttggctcatagaaagtttgcgg 1485

>dbj|AK058253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C09, full
           insert sequence
          Length = 967

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttgatctccacggcacggcgtgcgctatccacctcctgcaccgctccaaagacgatctcg 350
           ||||||||||| || |||||   ||| || ||||||||||| ||||||||||| ||||||
Sbjct: 660 ttgatctccacagcgcggcgcttgctgtctacctcctgcacggctccaaagacaatctcg 601

                                                 
Query: 351 ttcgtcgcctcgcagctcggctcgtagaacgtctgcgg 388
           || || ||||| ||||| ||||| ||||| || |||||
Sbjct: 600 tttgttgcctcacagcttggctcatagaaagtttgcgg 563

>gb|BT024150.1| Zea mays clone EL01N0439G12 mRNA sequence
          Length = 1773

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 318  tccacctcctgcaccgctccaaagacgatctcgttcgtcgcctcgcagctcggctcgtag 377
            ||||||||||| ||||| |||||||||||||| || || | |||||||||| ||||||| 
Sbjct: 1509 tccacctcctggaccgcgccaaagacgatctcctttgtaggctcgcagctctgctcgtaa 1450

                    
Query: 378  aacgtctg 385
            || |||||
Sbjct: 1449 aatgtctg 1442

>gb|AY106739.1| Zea mays PCO086600 mRNA sequence
          Length = 544

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 86/104 (82%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                       
Query: 318 tccacctcctgcacc-gctccaaagacgatctcgttcgtcgcctcgcagctcggctcgta 376
           ||||||||||| ||| || |||||||||||||| || || | |||||||||| |||||||
Sbjct: 214 tccacctcctggacccgcgccaaagacgatctcctttgtaggctcgcagctctgctcgta 155

                                                       
Query: 377 gaacgtctgcggccccagggagtactgcctgttgtgctgcaggt 420
            || ||||| || ||    |||||||||||||  ||||||||||
Sbjct: 154 aaatgtctgtgggcctgcagagtactgcctgtgctgctgcaggt 111

>gb|AY109186.1| Zea mays PCO080538 mRNA sequence
          Length = 421

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 233 gctgcggtagcgcagcccgctctgctcgtaggccgccgcgtcgccatagttaaccggctt 292
           ||||||| | ||||||||| || ||||| | | |||| ||||||| | ||| || |||||
Sbjct: 105 gctgcggaaccgcagcccgttcagctcgaacggcgccacgtcgccgtggttcacgggctt 46

                             
Query: 293 gatctccacggcacggcg 310
           ||||||||||| ||||||
Sbjct: 45  gatctccacgggacggcg 28

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 227    gccgccgctgcggtagcgcagc 248
              ||||||||||||||||||||||
Sbjct: 606061 gccgccgctgcggtagcgcagc 606040

>ref|XM_804417.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053511483.60) partial mRNA
          Length = 1005

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 gctgccgctccatttctctcc 121
           |||||||||||||||||||||
Sbjct: 280 gctgccgctccatttctctcc 260

>dbj|AK110083.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-G02, full
            insert sequence
          Length = 2869

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 224  gtagccgccgctgcggtagcg 244
            |||||||||||||||||||||
Sbjct: 2053 gtagccgccgctgcggtagcg 2033

>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 355     tcgcctcgcagctcggctcg 374
               ||||||||||||||||||||
Sbjct: 1866384 tcgcctcgcagctcggctcg 1866403

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  tcgtaggccgccgcgtcgcc 277
            ||||||||||||||||||||
Sbjct: 6676 tcgtaggccgccgcgtcgcc 6657

>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    gaaggaacaacaagcttaga 209
              ||||||||||||||||||||
Sbjct: 131007 gaaggaacaacaagcttaga 130988

>emb|AL031120.1|HS459L4 Human DNA sequence from clone RP3-459L4 on chromosome 6p22.3-24.1
             Contains part of the SCA1 gene for spinocerebellar ataxia
             1 (olivopontocerebellar ataxia 1, autosomal dominant,
             ataxin 1), complete sequence
          Length = 165363

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    taatacatatattagtccaa 37
             ||||||||||||||||||||
Sbjct: 80989 taatacatatattagtccaa 80970

>emb|AL928625.5| Mouse DNA sequence from clone RP24-528P17 on chromosome 4, complete
              sequence
          Length = 170639

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    gaaatctaatcatgtaaact 186
              ||||||||||||||||||||
Sbjct: 152718 gaaatctaatcatgtaaact 152737

>dbj|AB192510.1| Sus scrofa genomic DNA, chromosome 7, BAC clone: L111D05, complete
             sequence
          Length = 150159

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    cagcttctccttccatccat 86
             ||||||||||||||||||||
Sbjct: 98710 cagcttctccttccatccat 98729

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 355     tcgcctcgcagctcggctcg 374
               ||||||||||||||||||||
Sbjct: 1599876 tcgcctcgcagctcggctcg 1599895

>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete
             sequence
          Length = 197149

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   gaaggaacaacaagcttaga 209
             ||||||||||||||||||||
Sbjct: 44282 gaaggaacaacaagcttaga 44263

>dbj|AK109960.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-B06, full
           insert sequence
          Length = 3892

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 cgcctcgcagctcggctcgt 375
           ||||||||||||||||||||
Sbjct: 920 cgcctcgcagctcggctcgt 939

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 244     gcagcccgctctgctcgtaggccgccgcgtcg 275
               |||||||||||||||| | | |||||||||||
Sbjct: 4110239 gcagcccgctctgctccttgcccgccgcgtcg 4110270


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,173,258
Number of Sequences: 3902068
Number of extensions: 3173258
Number of successful extensions: 61456
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61214
Number of HSP's gapped (non-prelim): 237
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)