>PWP2_CAEEL (P91341) Periodic tryptophan protein 2 homolog|
          Length = 910

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 411  HRLLHTFKFMALNNFFKDWPAKPLEFPSVKLNQIELESDIAEEGSDDDLPDAEA 250
            H   H  K    N F  +W  K  +       + E E D+++E  D+D+ D  A
Sbjct: 842  HHQQHITKLANQNKFALNWLVKIRQSKKSVKKEEEEEEDVSDESDDEDIEDESA 895

>PSBZ_CRYJA (Q5IHA3) Photosystem II reaction center Z protein|
          Length = 62

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
 Frame = +1

Query: 112 NLFSYFSISTLXVASVSFIIAS--------NLLITGARLWLVTVFL 225
           ++F+  +ISTL V  V   +AS        N+L +G  LW+ +VFL
Sbjct: 8   SVFALIAISTLLVIGVPVALASPNGWSSNKNVLFSGVSLWIGSVFL 53

>IE63_VZVD (P09255) Transcriptional transactivator IE63 (Immediate-early|
           protein 63) (IE63)
          Length = 278

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 342 LEFPSVKLNQIELESDIAEEGSDDDLPD 259
           +E P+V L++  LE D++++G +DD  D
Sbjct: 140 IEAPNVPLHRSALECDVSDDGGEDDSDD 167

>ROR2_HUMAN (Q01974) Tyrosine-protein kinase transmembrane receptor ROR2|
           precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase,
           receptor-related 2)
          Length = 943

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 195 SSTLAGHRFPSN*GCSPWPPRRPASHHLS 281
           S+T +GH+      C PW  + P SHHLS
Sbjct: 329 STTKSGHQ------CQPWALQHPHSHHLS 351

>PSBZ_PSINU (Q8WI21) Photosystem II reaction center Z protein|
          Length = 62

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
 Frame = +1

Query: 112 NLFSYFSISTLXVASVSFIIAS--------NLLITGARLWLVTVFL 225
           ++F+  +IS L V  V  ++AS        N++ +GA LW+  VFL
Sbjct: 8   SVFALITISFLLVIGVPVVLASPDGWSSSKNIVFSGASLWIGLVFL 53

>PSBZ_CHAGL (Q8M9W6) Photosystem II reaction center Z protein|
          Length = 62

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
 Frame = +1

Query: 112 NLFSYFSISTLXVASVSFIIAS--------NLLITGARLWLVTVFL 225
           ++F+  +IS L V  V  ++AS        N + +GA LW+  VFL
Sbjct: 8   SVFALVAISFLLVVGVPVVLASPDGWSTSKNAVFSGASLWIALVFL 53

>AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 809

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 393 FKFMALNNFFKDWP---AKPLEFPSVKLNQIELESDIAEEGSDDD 268
           ++  +L+ FF D P   +KP +   V     + + D +EE SDDD
Sbjct: 744 YRLQSLDEFFSDIPERKSKPRKIIKVVEESSDEDEDESEESSDDD 788

>MIER1_MOUSE (Q5UAK0) Mesoderm induction early response protein 1 (Mi-er1)|
          Length = 556

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 330 SVKLNQIELESDIAEEGSDDDLPDAEAAKGCSLSLKE 220
           +V+L + E E +  EEG DD+  D +   GCS   KE
Sbjct: 123 TVRLPEEEEEEEEEEEGEDDEDADNDDNSGCSGENKE 159

>SCD2_SCHPO (P40996) Protein scd2/ral3|
          Length = 536

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -2

Query: 417 DRHRLLHTFKFMALNNFFKDW---PAKPLEFPSVKLNQIELESDIAEEGSDDDLPDAEAA 247
           D + L+ + + M L+ + K+    PA+ LE   VKL  + L+ D+        +P+A   
Sbjct: 369 DVNELISSQRAMDLDVYLKEMCRLPARLLENELVKLFFLPLDGDVESPHPTSTMPEALPR 428

Query: 246 KGCSLSLKENGDQ 208
           +  S SL E   +
Sbjct: 429 EPLSFSLPEKAPE 441

>PSBZ_MARPO (P09973) Photosystem II reaction center Z protein|
          Length = 62

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = +1

Query: 115 LFSYFSISTLXVASVSFIIAS--------NLLITGARLWLVTVFL 225
           +F+  +IS L V  V  ++AS        N++ +GA LW+  VFL
Sbjct: 9   VFALIAISFLLVIGVPVVLASPEGWSSNKNVVFSGASLWIGLVFL 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,966,802
Number of Sequences: 219361
Number of extensions: 680072
Number of successful extensions: 2131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2131
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)