ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8k02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450193.1| Oryza sativa (japonica cultivar-group), mRNA 323 4e-85
2dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
3gb|AY108424.1| Zea mays PCO149843 mRNA sequence 248 2e-62
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
5dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
6ref|XM_463904.1| Oryza sativa (japonica cultivar-group), mRNA 64 6e-07
7dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
8dbj|AK060220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
9emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h2... 48 0.033
10gb|AF081803.1|AF081803 Xenopus laevis non-receptor protein tyros... 42 2.0
11gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome... 42 2.0
12ref|XM_677376.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.0
13ref|XM_675477.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.0
14gb|AC125379.4| Mus musculus BAC clone RP23-53B19 from chromosome... 40 8.0
15emb|AL391002.9| Human DNA sequence from clone RP11-490H23 on chr... 40 8.0
16gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, co... 40 8.0
17dbj|AB108686.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgp... 40 8.0
18dbj|AB108685.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgp... 40 8.0
19gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, compl... 40 8.0
20gb|AC011537.8| Homo sapiens chromosome 19 clone LLNLR-249E10, co... 40 8.0
21gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chrom... 40 8.0
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
23gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, compl... 40 8.0
24gb|AC010883.8| Homo sapiens BAC clone RP11-339H12 from 2, comple... 40 8.0
25gb|AE014133.1| Streptococcus mutans UA159, complete genome 40 8.0
26dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
27dbj|AB010970.1| Streptococcus mutans rmlD, rgpAc, rgpBc, rgpCc, ... 40 8.0 
>ref|XM_450193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score =  323 bits (163), Expect = 4e-85
 Identities = 260/293 (88%)
 Strand = Plus / Minus

                                                                        
Query: 294  ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 353
            |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 1812 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 1753

                                                                        
Query: 354  tccgtcgtgctcatctccaacctcctctgctattttcttaagagcttctaatatttcgga 413
            ||| || |||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 1752 tccatcatgctcatcaccaacctcctctgctattctctgaagagtttctaatatttcaga 1693

                                                                        
Query: 414  gaaatctggcctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctt 473
            ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |  || ||
Sbjct: 1692 gaaatctggtctttcagcaggctcctgttgccaacatttctgaagaagctcagaaagttt 1633

                                                                        
Query: 474  tgcatgcgcattttttggtattgtaggccgcaaccccttctgaaccacacctacagctgc 533
            |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1632 tgcatgagcattttttggtattgtaggccgtaatcccttctgaaccacacctacagctgc 1573

                                                                 
Query: 534  ttgtaatggtgtcangtactcataaggaatcttcccagtgagcagttnccaca 586
            |||||||||||||| ||||||||||||||||||||| |||||||| | |||||
Sbjct: 1572 ttgtaatggtgtcaggtactcataaggaatcttccctgtgagcagctcccaca 1520
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>dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full
            insert sequence
          Length = 2263

 Score =  323 bits (163), Expect = 4e-85
 Identities = 260/293 (88%)
 Strand = Plus / Minus

                                                                        
Query: 294  ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 353
            |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 1845 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 1786

                                                                        
Query: 354  tccgtcgtgctcatctccaacctcctctgctattttcttaagagcttctaatatttcgga 413
            ||| || |||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 1785 tccatcatgctcatcaccaacctcctctgctattctctgaagagtttctaatatttcaga 1726

                                                                        
Query: 414  gaaatctggcctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctt 473
            ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |  || ||
Sbjct: 1725 gaaatctggtctttcagcaggctcctgttgccaacatttctgaagaagctcagaaagttt 1666

                                                                        
Query: 474  tgcatgcgcattttttggtattgtaggccgcaaccccttctgaaccacacctacagctgc 533
            |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1665 tgcatgagcattttttggtattgtaggccgtaatcccttctgaaccacacctacagctgc 1606

                                                                 
Query: 534  ttgtaatggtgtcangtactcataaggaatcttcccagtgagcagttnccaca 586
            |||||||||||||| ||||||||||||||||||||| |||||||| | |||||
Sbjct: 1605 ttgtaatggtgtcaggtactcataaggaatcttccctgtgagcagctcccaca 1553
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>gb|AY108424.1| Zea mays PCO149843 mRNA sequence
          Length = 1330

 Score =  248 bits (125), Expect = 2e-62
 Identities = 243/283 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  cgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctttccgtcgtgc 363
            |||||||||| || ||||||||| ||||||||  || ||||||||||||| || ||||||
Sbjct: 1179 cgccccctcaaagccgaaaagaaaccacccagtgttctgtccttgtgcttcccatcgtgc 1120

                                                                        
Query: 364  tcatctccaacctcctctgctattttcttaagagcttctaatatttcggagaaatctggc 423
            || ||||| ||||||||||||||| ||| ||||| |||||||||||||||||| ||||| 
Sbjct: 1119 tcctctccgacctcctctgctattctctgaagagtttctaatatttcggagaagtctggt 1060

                                                                        
Query: 424  ctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgca 483
            ||||  | ||||||||||||||| || |||||||||||||| |  |||||||| || | |
Sbjct: 1059 ctttgggtagggtcctgctgccagcatttctgaagaagctcggaaagctttgcgtgagta 1000

                                                                        
Query: 484  ttttttggtattgtaggccgcaaccccttctgaaccacacctacagctgcttgtaatggt 543
            |  ||||| ||||||||||| || |||||||| |||||||| ||||| ||||||| ||| 
Sbjct: 999  tgctttggaattgtaggccgtaatcccttctgcaccacaccaacagcggcttgtagtgga 940

                                                       
Query: 544  gtcangtactcataaggaatcttcccagtgagcagttnccaca 586
            |||| ||||||||||||||||||||| ||||| |||| |||||
Sbjct: 939  gtcaggtactcataaggaatcttccctgtgagtagttcccaca 897
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Minus

                                                                            
Query: 372      aacctcctctgctattttcttaagagcttctaatatttcggagaaatctggcctttcagc 431
                |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 21193383 aacctcctctgctattctctgaagagtttctaatatttcagagaaatctggtctttcagc 21193324

                                                                            
Query: 432      agggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgcattttttgg 491
                ||| ||||| |||||||| |||||||||||||| |  || |||||||| |||||||||||
Sbjct: 21193323 aggctcctgttgccaacatttctgaagaagctcagaaagttttgcatgagcattttttgg 21193264

                            
Query: 492      tattgtaggccg 503
                ||||||||||||
Sbjct: 21193263 tattgtaggccg 21193252



 Score =  107 bits (54), Expect = 4e-20
 Identities = 56/57 (98%)
 Strand = Plus / Minus

                                                                         
Query: 509      ccttctgaaccacacctacagctgcttgtaatggtgtcangtactcataaggaatct 565
                ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 21192767 ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatct 21192711



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 294      ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 353
                |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 21193533 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 21193474

                                       
Query: 354      tccgtcgtgctcatctccaacct 376
                ||| || |||||||| |||||||
Sbjct: 21193473 tccatcatgctcatcaccaacct 21193451
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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Minus

                                                                         
Query: 372   aacctcctctgctattttcttaagagcttctaatatttcggagaaatctggcctttcagc 431
             |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 64140 aacctcctctgctattctctgaagagtttctaatatttcagagaaatctggtctttcagc 64081

                                                                         
Query: 432   agggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgcattttttgg 491
             ||| ||||| |||||||| |||||||||||||| |  || |||||||| |||||||||||
Sbjct: 64080 aggctcctgttgccaacatttctgaagaagctcagaaagttttgcatgagcattttttgg 64021

                         
Query: 492   tattgtaggccg 503
             ||||||||||||
Sbjct: 64020 tattgtaggccg 64009



 Score =  107 bits (54), Expect = 4e-20
 Identities = 56/57 (98%)
 Strand = Plus / Minus

                                                                      
Query: 509   ccttctgaaccacacctacagctgcttgtaatggtgtcangtactcataaggaatct 565
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 63524 ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatct 63468



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 294   ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 353
             |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 64290 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 64231

                                    
Query: 354   tccgtcgtgctcatctccaacct 376
             ||| || |||||||| |||||||
Sbjct: 64230 tccatcatgctcatcaccaacct 64208
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>ref|XM_463904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2251

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 508  cccttctgaaccacacctacagctgcttgtaatggtgtcangtactcataaggaatcttc 567
            ||||||||||| |||||||  |||||||||| |||||| | ||||||||| || ||||| 
Sbjct: 1711 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcatagggtatcttg 1652

                       
Query: 568  ccagtgagcag 578
            ||||| |||||
Sbjct: 1651 ccagttagcag 1641
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>dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N12, full
            insert sequence
          Length = 2251

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 508  cccttctgaaccacacctacagctgcttgtaatggtgtcangtactcataaggaatcttc 567
            ||||||||||| |||||||  |||||||||| |||||| | ||||||||| || ||||| 
Sbjct: 1711 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcatagggtatcttg 1652

                       
Query: 568  ccagtgagcag 578
            ||||| |||||
Sbjct: 1651 ccagttagcag 1641
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>dbj|AK060220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F01, full
           insert sequence
          Length = 1006

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 508 cccttctgaaccacacctacagctgcttgtaatggtgtcangtactcataaggaatcttc 567
           ||||||||||| |||||||  |||||||||| |||||| | ||||||||| || ||||| 
Sbjct: 550 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcatagggtatcttg 491

                      
Query: 568 ccagtgagcag 578
           ||||| |||||
Sbjct: 490 ccagttagcag 480
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>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE
          Length = 115239

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 509   ccttctgaaccacacctacagctgcttgtaatggtgtcangta 551
             ||||||| |||||||| || |||||||||||||| |||| |||
Sbjct: 64705 ccttctgcaccacaccaactgctgcttgtaatggggtcaagta 64663
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>gb|AF081803.1|AF081803 Xenopus laevis non-receptor protein tyrosine kinase laloo mRNA,
            complete cds
          Length = 1491

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 431  cagggtcctgctgccaacact 451
            |||||||||||||||||||||
Sbjct: 1405 cagggtcctgctgccaacact 1385
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>gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome 9, complete sequence
          Length = 181162

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    cagcaggcatccatctcaatg 204
              |||||||||||||||||||||
Sbjct: 105662 cagcaggcatccatctcaatg 105642
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>ref|XM_677376.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9199.2), mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 356 cgtcgtgctcatctccaacctcct 379
           |||||||||||||| |||||||||
Sbjct: 291 cgtcgtgctcatctacaacctcct 314
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>ref|XM_675477.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7300.2), mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cttttgtccttgtgctttcc 356
            ||||||||||||||||||||
Sbjct: 1785 cttttgtccttgtgctttcc 1804
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>gb|AC125379.4| Mus musculus BAC clone RP23-53B19 from chromosome 12, complete sequence
          Length = 225930

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 381    tgctattttcttaagagcttctaa 404
              |||| |||||||||||||||||||
Sbjct: 122565 tgcttttttcttaagagcttctaa 122542
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>emb|AL391002.9| Human DNA sequence from clone RP11-490H23 on chromosome Xq25-26.1,
             complete sequence
          Length = 85637

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   ggaatcttcccagtgagcag 578
             ||||||||||||||||||||
Sbjct: 23151 ggaatcttcccagtgagcag 23170
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>gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, complete sequence
          Length = 38629

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 369   tccaacctcctctgctattttctt 392
             |||||||||||||||| |||||||
Sbjct: 17550 tccaacctcctctgctgttttctt 17573
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>dbj|AB108686.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgpE, rgpF, ORF1, ORF2,
            ORF3, ORF4, ORF12 genes for rhamnosyltransferase,
            rhamnosyltransferase, ABC transporter, ABC transporter,
            glucosyltransferase, rhamnosyltransferase, hypothetical
            proteins, complete cds, strain:LM7
          Length = 16442

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 484  ttttttggtattgtaggccg 503
            ||||||||||||||||||||
Sbjct: 2997 ttttttggtattgtaggccg 3016
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>dbj|AB108685.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgpE, rgpF, ORF1, ORF2,
            ORF3, ORF12 genes for rhamnosyltransferase,
            rhamnosyltransferase, ABC transporter, ABC transporter,
            glucosyltransferase, rhamnosyltransferase, hypothetical
            proteins, complete cds, strain:MT6219
          Length = 14730

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 484  ttttttggtattgtaggccg 503
            ||||||||||||||||||||
Sbjct: 3418 ttttttggtattgtaggccg 3437
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>gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, complete sequence
          Length = 123851

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    tctctccctatgttacatgt 79
             ||||||||||||||||||||
Sbjct: 73748 tctctccctatgttacatgt 73729
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>gb|AC011537.8| Homo sapiens chromosome 19 clone LLNLR-249E10, complete sequence
          Length = 42056

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 369   tccaacctcctctgctattttctt 392
             |||||||||||||||| |||||||
Sbjct: 40411 tccaacctcctctgctgttttctt 40388
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>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown,
             complete sequence
          Length = 180977

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    tctctccctatgttacatgt 79
             ||||||||||||||||||||
Sbjct: 53949 tctctccctatgttacatgt 53930
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 256      gttcaaatggattgcaaatc 275
                ||||||||||||||||||||
Sbjct: 16983702 gttcaaatggattgcaaatc 16983683
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>gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, complete sequence
          Length = 162715

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    gctattttcttaagagcttctaat 405
              ||||||||||| ||||||||||||
Sbjct: 152540 gctattttctttagagcttctaat 152563
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>gb|AC010883.8| Homo sapiens BAC clone RP11-339H12 from 2, complete sequence
          Length = 215532

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 557    aaggaatcttcccagtgagcagtt 580
              |||||||||||||||| |||||||
Sbjct: 194843 aaggaatcttcccagttagcagtt 194820
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>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    ttttttggtattgtaggccg 503
              ||||||||||||||||||||
Sbjct: 773361 ttttttggtattgtaggccg 773380
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>dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1423D04
          Length = 154474

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    gttcaaatggattgcaaatc 275
              ||||||||||||||||||||
Sbjct: 116724 gttcaaatggattgcaaatc 116705
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>dbj|AB010970.1| Streptococcus mutans rmlD, rgpAc, rgpBc, rgpCc, rgpDc, rgpEc, rgpFc
            and ORF7 genes, partial and complete cds
          Length = 11085

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 484  ttttttggtattgtaggccg 503
            ||||||||||||||||||||
Sbjct: 3831 ttttttggtattgtaggccg 3850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,272,125
Number of Sequences: 3902068
Number of extensions: 4272125
Number of successful extensions: 72116
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72042
Number of HSP's gapped (non-prelim): 74
length of query: 590
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 567
effective length of database: 17,143,297,704
effective search space: 9720249798168
effective search space used: 9720249798168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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