ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8j24 |
|---|---|
| Clone Library Name | barley_pub |
>YN9B_YEAST (P52923) Protein YNR074C| Length = 378 Score = 40.8 bits (94), Expect = 0.003 Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 12/123 (9%) Frame = -3 Query: 598 LKESLDTKGRVMVEKDLRVKGHD--NIFAIGDITDIPEIKQGYLAQKH--ALLVAKNLKL 431 + + D KG + VEK+ RVK + N+FAIGD+T+ G + + + +L + Sbjct: 252 ISDLCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNFR--YHGLVKRDNWVDVLTRNVISS 309 Query: 430 LIKGSPPSKLAT--YSTGFPLAIVSLGRKEGLAQLPYLTLTGC--IPGML----KSKDLF 275 L +G+ S + TG + VSLG G Q P L L G IP L KSK+LF Sbjct: 310 LQEGTEASLVDADCLETGHAPSGVSLGPNAGFGQFP-LPLLGTINIPSFLISRAKSKNLF 368 Query: 274 VGK 266 K Sbjct: 369 SDK 371
>SQRD_MOUSE (Q9R112) Sulfide:quinone oxidoreductase, mitochondrial precursor| (EC 1.-.-.-) Length = 450 Score = 36.6 bits (83), Expect = 0.066 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -3 Query: 601 ILKES--LDTKGRVMVEKD-LRVKGHDNIFAIGDITDIPEIKQGYLAQKHALLVAKNLKL 431 +LK S D+ G V V+K+ L+ K + N+F IGD T++P K + ++ + + L Sbjct: 303 VLKRSPVADSAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTMCL 362 Query: 430 LIKGSPPSKLATYSTGFPL 374 ++K P K T PL Sbjct: 363 IMKNQRPIKKYDGYTSCPL 381
>SQRD_HUMAN (Q9Y6N5) Sulfide:quinone oxidoreductase, mitochondrial precursor| (EC 1.-.-.-) Length = 450 Score = 36.2 bits (82), Expect = 0.086 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -3 Query: 601 ILKES--LDTKGRVMVEKD-LRVKGHDNIFAIGDITDIPEIKQGYLAQKHALLVAKNLKL 431 +LK S D G V V+K+ L+ + + N+F IGD T++P K + ++ + + + Sbjct: 303 VLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISV 362 Query: 430 LIKGSPPSKLATYSTGFPL 374 ++K P+K T PL Sbjct: 363 IMKNQTPTKKYDGYTSCPL 381
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 33.1 bits (74), Expect = 0.73 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Frame = -2 Query: 503 RYS*NQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALP 324 R+ +Q+RV RPE + S +T + + +HR +GD G + P Sbjct: 830 RHRGDQSRVRRPETLRSSSRNDHSTKSDGSKTEKLERKHRHESGDSRDRPSGE--QKSRP 887 Query: 323 DAHRVHTGDAQ-----IQGPVRRQDEEADG 249 D+ RV GD + P + D+ +G Sbjct: 888 DSPRVKQGDTNKSRPGFKSPNSKDDKRTEG 917
>XAPB_ECOLI (P45562) Xanthosine permease (Xanthosine transporter)| Length = 418 Score = 33.1 bits (74), Expect = 0.73 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +3 Query: 414 GDPLISSFRFFATSSACFWARYPCLISGISVMSPIAKMLS*PFTLKSFSTITLPLVS 584 G+P + F + F +YP ++ +S M+ + +L+ PF LK F T+ L+S Sbjct: 231 GNPFLHDFARNPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLKRFGIKTVMLMS 287
>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2| Length = 984 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Frame = -2 Query: 476 PRPEARAAGSEEPEATDQGVASEQARHLQHRV--PAGDRLPGKEGRAGAAALPDAHRVHT 303 P PEA++A E+ EA D G +QA + PA ++ P ++ R + P+ V Sbjct: 163 PAPEAQSAAPEKVEAHDAGAPVQQAETTESAPAEPAAEKAPAEKRRYEVSMEPEKDSVQA 222 Query: 302 GDAQIQGPVRRQDEEADG 249 D EADG Sbjct: 223 ------------DTEADG 228
>PACC_EMENI (Q00202) pH-response transcription factor pacC/RIM101| Length = 678 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +1 Query: 244 SGPSASSSCRRTGPWI*ASP------VCTR*ASGRAAAPALPSFPGRRSPAGTRCCRWRA 405 S P+A+ T P + A+ V + A+G AA+P P+ R PA C W+ Sbjct: 24 SQPAAAQVTTVTSPSVTATAAAATAAVASPQANGNAASPVAPASSTSR-PAEELTCMWQG 82 Query: 406 CSEATP 423 CSE P Sbjct: 83 CSEKLP 88
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +1 Query: 274 RTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 384 RTGP P G+ P LP +PGR+ P G+ Sbjct: 776 RTGPTGDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGS 812
>ZO2_CANFA (Q95168) Tight junction protein ZO-2 (Zonula occludens 2 protein)| (Zona occludens 2 protein) (Tight junction protein 2) Length = 1174 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/63 (31%), Positives = 25/63 (39%) Frame = -2 Query: 500 YS*NQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPD 321 Y R PEA +P+A G S HL+ R P+ P GR A PD Sbjct: 230 YDRGYDRTYSPEAEYGRRTQPDARHAGSRSRSREHLRSRSPS----PELRGRPDHAGQPD 285 Query: 320 AHR 312 + R Sbjct: 286 SDR 288
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/71 (29%), Positives = 29/71 (40%) Frame = -2 Query: 455 AGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGPV 276 + S+EP A+ SE+ VP+G LP +GA PD TG G + Sbjct: 773 SASQEPSASQVPSTSEEPYTPSLAVPSGTELPSSGDTSGA---PDLSGDFTGSTDTSGRL 829 Query: 275 RRQDEEADGPE 243 E + G E Sbjct: 830 DSSGEPSGGSE 840
>NDI1_YEAST (P32340) Rotenone-insensitive NADH-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase) Length = 513 Score = 30.4 bits (67), Expect = 4.7 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = -3 Query: 598 LKESLDTKGRVMVEKDLRVKGHDNIFAIGD--ITDIPEIKQGYLAQKHALLVAKN 440 + E +K + V L+VKG +NIFAIGD +P Q +A + A +AKN Sbjct: 354 IPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQ--VAHQEAEYLAKN 406
>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member| 1 (Neuron-specific X11 protein) (Neuronal Munc18-1-interacting protein 1) (Mint-1) (Adapter protein X11alpha) Length = 839 Score = 30.4 bits (67), Expect = 4.7 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Frame = -2 Query: 452 GSEEPEATDQGVASEQARH----LQHRVPAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQ 285 GS E E D+ E L+H ++ P AG A P+ HR H Sbjct: 6 GSAEVEVADEAPGGEVNESVEADLEHPEVEEEQQPSPPPPAGHA--PEDHRAHPAPPPPP 63 Query: 284 GPVRRQDEEADGPECLSRPISRQN 213 P Q+EE + ECL+R S ++ Sbjct: 64 PP---QEEEEERGECLARSASTES 84
>PGCA_PIG (Q29011) Aggrecan core protein (Cartilage-specific proteoglycan| core protein) (CSPCP) (Fragments) Length = 537 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2 Query: 476 PRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGA 336 P P SE+P A+++ SEQ L VP+ LPG +GA Sbjct: 488 PFPSEEPFPSEKPSASEEPFPSEQPSTLSAPVPSRTELPGSGEVSGA 534
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -2 Query: 380 PAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGP 279 P LPG +GRAG P +R TG A I+GP Sbjct: 408 PGSRGLPGADGRAGVMG-PPGNRGSTGPAGIRGP 440
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +1 Query: 274 RTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 384 RTGP P G+ P LP +PGR+ P G+ Sbjct: 776 RTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812
>AXN2_RAT (O70240) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like| protein) (Axil) Length = 838 Score = 30.0 bits (66), Expect = 6.2 Identities = 25/100 (25%), Positives = 39/100 (39%) Frame = +2 Query: 89 HVHSHFC*NVHHHSRHITNNYSHXEQRMTIQHICAASQXFICFAWRWAGSSIQAHLLPRL 268 HVH H+ +HHH+ T E ++ +C + C+ S ++H P Sbjct: 509 HVHHHY---IHHHAVPKTKEEIEAEATQRVRCLCPGGTDYYCY------SKCKSHSKP-- 557 Query: 269 ADEQVLGFEHPRYAPGERQVGQLRQPFLPSQGDDRQREPG 388 P PGE+ G R LP + + + EPG Sbjct: 558 ----------PEPLPGEQFCGS-RGGTLPKR-NTKGTEPG 585
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -2 Query: 380 PAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGP 279 P LPG +GRAG P +R TG A ++GP Sbjct: 408 PGSRGLPGADGRAGVMG-PPGNRGSTGPAGVRGP 440
>DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2207 Score = 30.0 bits (66), Expect = 6.2 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = -2 Query: 386 RVPAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGPVRRQDEEADGPECLS 234 ++P G PG+E +AAL D QI G +RRQ EE PE S Sbjct: 1947 QIPIGQPEPGQENEELSAALSDRFSKPL-KKQISGLIRRQREELLHPELAS 1996
>GRB14_HUMAN (Q14449) Growth factor receptor-bound protein 14 (GRB14 adapter| protein) Length = 540 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 494 RNICDVTDCKNVIVTLHSQVLLHHYSSLGVQRFLQD 601 R++C + KN + HS L H +GV+R ++D Sbjct: 131 RDVCQLLILKNHYIDDHSWTLFEHLPHIGVERTIED 166
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 29.6 bits (65), Expect = 8.0 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%) Frame = -2 Query: 461 RAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRA-------GAAALPDAHRVHT 303 R S+ T +G S + + +G+ G+ GR G AA A R Sbjct: 1335 RVGFSQSEMVTGEGSPSPEEEEEEEEEGSGEGASGRRGRVRVRLPRVGLAAPSKASRGQE 1394 Query: 302 GDAQIQGPVRRQDEEADGPECLSRPISR 219 GDA + PVR + + P P +R Sbjct: 1395 GDAAPKSPVREKSPKFRFPRVSLSPKAR 1422
>US02_HHV2H (P13292) Protein US2| Length = 290 Score = 29.6 bits (65), Expect = 8.0 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +2 Query: 224 RWAGSSIQAHLLPRLADEQVLGFEHPRYAPGERQVGQLRQPFLPS--QGDDRQREPG--- 388 RW S + H PR A + HP P +G+ P PS GDD + PG Sbjct: 212 RWLRSLVAPHNKPRPASSRPHPATHPTQRPCFTCMGRPEIPDEPSWQTGDDDPQNPGPPL 271 Query: 389 AVGGE 403 AVG E Sbjct: 272 AVGDE 276
>RETST_HUMAN (Q6NUM9) All-trans-retinol 13,14-reductase precursor (EC 1.3.99.23)| (All-trans-13,14-dihydroretinol saturase) (RetSat) Length = 610 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%) Frame = +3 Query: 396 VASLLGGDPLISSFRFFATSSACFWA------RYPCLISGISVMSPIAKM 527 V S+ G PL + F A AC+ A +PC+++ + SPI + Sbjct: 512 VESVTAGSPLTNQFYLAAPRGACYGADHDLGRLHPCVMASLRAQSPIPNL 561
>PRP5_USTMA (Q4PFD9) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 1156 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = -2 Query: 338 AAALPDAHRVHTGDAQIQGPVRRQDEEADGPECLSRPI 225 AA PD R H A QG RR DE A P + P+ Sbjct: 95 AAPSPDGRRFHVEGAPRQGGRRRWDEGAPTPPTAAAPV 132
>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50| Length = 1375 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = -3 Query: 574 GRVMVEKDLRVKGHDNIFAIGDITDIPEIKQGYLAQKHALLVAKNLKLLIKGSPPS 407 GRV V + ++ +GH E+ +GY + + L + + LKL I+GS PS Sbjct: 1323 GRVSVPRTMQDRGHQ------------EVLEGYPSSETELSLKQALKLQIEGSDPS 1366 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,203,356 Number of Sequences: 219361 Number of extensions: 2069864 Number of successful extensions: 6573 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6525 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
