ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8j24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full ... 743 0.0
2emb|AJ606031.1| Triticum aestivum partial mRNA for putative pyri... 731 0.0
3gb|AY107334.1| Zea mays PCO062090 mRNA sequence 367 3e-98
4dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 1e-45
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
6dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
7ref|NM_114287.2| Arabidopsis thaliana disulfide oxidoreductase/ ... 44 0.57
8gb|AC148001.6| Mus musculus BAC clone RP24-82P9 from chromosome ... 44 0.57
9ref|XM_422763.1| PREDICTED: Gallus gallus similar to SUMO1/sentr... 44 0.57
10emb|AL353814.1|ATF26G5 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.57
11gb|BT008451.1| Arabidopsis thaliana At3g44190 gene, complete cds 44 0.57
12emb|BX823155.1|CNS0A7AM Arabidopsis thaliana Full-length cDNA Co... 44 0.57
13emb|BX823570.1|CNS0A6LH Arabidopsis thaliana Full-length cDNA Co... 44 0.57
14gb|AY084651.1| Arabidopsis thaliana clone 114123 mRNA, complete ... 44 0.57
15gb|BT002026.1| Arabidopsis thaliana putative protein (At3g44190)... 44 0.57
16gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 42 2.2
17gb|AC153139.5| Mus musculus BAC clone RP23-411M4 from chromosome... 42 2.2
18gb|AC064856.5| Homo sapiens BAC clone RP11-264N11 from 2, comple... 42 2.2
19gb|AC160651.2| Pan troglodytes BAC clone CH251-489P13 from chrom... 42 2.2
20ref|NM_116172.3| Arabidopsis thaliana unknown protein AT3G63070 ... 40 8.8
21gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, co... 40 8.8
22gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, co... 40 8.8
23ref|XM_659299.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.8
24gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 8.8
25gb|AC140359.2| Mus musculus BAC clone RP24-240P8 from chromosome... 40 8.8
26gb|AC122045.3| Mus musculus BAC clone RP24-449H18 from 5, comple... 40 8.8
27gb|AC110573.11| Mus musculus chromosome 16, clone RP23-322A15, c... 40 8.8
28gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete ... 40 8.8
29gb|AC166575.1| Mus musculus BAC clone RP23-99E16 from chromosome... 40 8.8
30emb|AL139328.8| Human DNA sequence from clone RP11-84N7 on chrom... 40 8.8
31emb|AL020995.14|HS117O3 Human DNA sequence from clone RP1-117O3 ... 40 8.8
32gb|AC074336.14| Mus musculus Strain C57BL6/J chromosome 1 BAC, R... 40 8.8
33emb|Z11595.1|EBHCOMPMR Eptatretus burgeri partial mRNA for hagfi... 40 8.8
34emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8 40 8.8
35gb|AC090881.9| Mus Musculus Strain C57BL6/J chromosome 17 BAC, R... 40 8.8
36gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell ... 40 8.8
37gb|AY119282.1| Drosophila melanogaster SD27341 full insert cDNA 40 8.8
38ref|NM_206602.1| Drosophila melanogaster CG11418-RB, transcript ... 40 8.8
39ref|NM_130548.2| Drosophila melanogaster CG11418-RA, transcript ... 40 8.8
40gb|AC106822.3| Homo sapiens chromosome 5 clone RP11-772C9, compl... 40 8.8
41gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell... 40 8.8
42gb|AC015468.5|AC015468 Homo sapiens chromosome 8, clone RP11-369... 40 8.8
43gb|AC019181.4| Homo sapiens BAC clone RP11-272E3 from 2, complet... 40 8.8
44gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.8
45gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, comple... 40 8.8
46gb|AC006142.1|AC006142 Homo sapiens PAC clone RP4-572A3, complet... 40 8.8
47gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 o... 40 8.8
48emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on ch... 40 8.8
49gb|AC134554.6| Mus musculus BAC clone RP24-313F7 from chromosome... 40 8.8
50gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 8.8
51emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome 3, B... 40 8.8
52gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, comple... 40 8.8 
>gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full insert mRNA sequence
          Length = 1349

 Score =  743 bits (375), Expect = 0.0
 Identities = 547/602 (90%), Gaps = 12/602 (1%)
 Strand = Plus / Minus

                                                                        
Query: 51   acacaccccaaaacgcaggccaaacaggcatctgcgtacatgtacattcacacttctgtt 110
            |||||| ||| ||| |||||||||||||| | | |||||||||||||| |||||| ||||
Sbjct: 1313 acacactccagaacacaggccaaacaggcctttccgtacatgtacatttacacttttgtt 1254

                                                                        
Query: 111  aaaatgttcatcaccattctcggcacatcaccaacaattactcgcacagngaa----caa 166
            ||||||||||||||||||| | |||||||||||||| |||||||||||   ||    |||
Sbjct: 1253 aaaatgttcatcaccattcgcagcacatcaccaacatttactcgcacatacaaaacacaa 1194

                                                                        
Query: 167  cgcatgacgatacaacacatatgtgcagccagccagnggtttatttgttttgcctggaga 226
              || ||| ||||||||||||||||||||||  ||   ||||||||||| || |||||||
Sbjct: 1193 gacaagacaatacaacacatatgtgcagcca--cat--gtttatttgttctgtctggaga 1138

                                                                        
Query: 227  tgggccggctcaagcattcaggcccatctgcttcctcgtcttgccgacgaacaggtcctt 286
            |    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1137 t----cggctcaagcatttaggcccatctgcttcctcgtcttgccgacaaacaggtcctt 1082

                                                                        
Query: 287  ggatttgagcatccccggtatgcacccggtgagcgtcaggtagggcagctgcgccagccc 346
            ||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 1081 ggatttgagcatccctggtatgcacccggtgagcgtcaggtacggtagctgagccagccc 1022

                                                                        
Query: 347  ttccttccttcccagggagacgatcgccagcgggaacccggtgctgtaggtggcgagctt 406
            |||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 1021 ttccttccttccgagggagacgatcgccagcgggaagccggtgatgtaggtggcgagctt 962

                                                                        
Query: 407  gctcggaggcgaccccttgatcagtagcttcaggttcttcgctaccagcagcgcgtgctt 466
            ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 961  gctcggaggcgcccccttgatcagcagcttcaggttcttggctaccagcagcgcgtgctt 902

                                                                        
Query: 467  ctgggcgaggtacccttgtttgatttcaggaatatctgtgatgtcaccgattgcaaaaat 526
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 901  ctgggcgaggtacccttgtttgatttcaggaatatcagtgatgtcaccaattgcaaaaat 842

                                                                        
Query: 527  gttatcgtgacccttcactctcaagtccttctccaccattactcttcccttggtgtccaa 586
            ||||| || |||||||||||||| |||||| |||||||||| |||||| |||||||||||
Sbjct: 841  gttattgtaacccttcactctcaggtccttttccaccattattcttcctttggtgtccaa 782

                                                                        
Query: 587  agattccttcaggatggtatcatgtagccacgatgaactcagtggcttgccaatacacac 646
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 781  agattccttcaggatggtatcatgtagccacgatgaactcagtggcttaccgatacacac 722

              
Query: 647  aa 648
            ||
Sbjct: 721  aa 720
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>emb|AJ606031.1| Triticum aestivum partial mRNA for putative pyridine
           nucleotide-disulphide oxidoreductase
          Length = 723

 Score =  731 bits (369), Expect = 0.0
 Identities = 480/516 (93%), Gaps = 10/516 (1%)
 Strand = Plus / Minus

                                                                       
Query: 133 gcacatcaccaacaattactcgcacagngaacaacgcatgacgatacaacacatatgtgc 192
           ||||||||||||||||||||||||||  |||||   |||     ||||||||||||||||
Sbjct: 714 gcacatcaccaacaattactcgcacacagaaca---catag---tacaacacatatgtgc 661

                                                                       
Query: 193 agccagccagnggtttatttgttttgcctggagatgggccggctcaagcattcaggccca 252
           |||||||||  ||||||||| ||||| ||| ||||    ||||||||||| |||||||||
Sbjct: 660 agccagccataggtttatttcttttgtctgaagat----cggctcaagcactcaggccca 605

                                                                       
Query: 253 tctgcttcctcgtcttgccgacgaacaggtccttggatttgagcatccccggtatgcacc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tctgcttcctcgtcttgccgacgaacaggtccttggatttgagcatccccggtatgcacc 545

                                                                       
Query: 313 cggtgagcgtcaggtagggcagctgcgccagcccttccttccttcccagggagacgatcg 372
           ||||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 544 cggtgagcgtcaggtagggtagctgtgccagtccgtccttccttccgagggagacgatcg 485

                                                                       
Query: 373 ccagcgggaacccggtgctgtaggtggcgagcttgctcggaggcgaccccttgatcagta 432
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccagcgggaagccggtgctgtaggtggcgagcttgctcggaggcgaccccttgatcagta 425

                                                                       
Query: 433 gcttcaggttcttcgctaccagcagcgcgtgcttctgggcgaggtacccttgtttgattt 492
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcttcaggttcttggctaccagcagcgcgtgcttctgggcgaggtacccttgtttgattt 365

                                                                       
Query: 493 caggaatatctgtgatgtcaccgattgcaaaaatgttatcgtgacccttcactctcaagt 552
           |||||||||| ||||||||||| |||||||||||||||| || |||||||||||| | ||
Sbjct: 364 caggaatatcggtgatgtcaccaattgcaaaaatgttattgtaacccttcactcttaggt 305

                                                                       
Query: 553 ccttctccaccattactcttcccttggtgtccaaagattccttcaggatggtatcatgta 612
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccttttccaccattactcttcctttggtgtccaaagattccttcaggatggtatcatgta 245

                                               
Query: 613 gccacgatgaactcagtggcttgccaatacacacaa 648
           |||||||||||||||||||||| |||||||||||||
Sbjct: 244 gccacgatgaactcagtggcttaccaatacacacaa 209
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>gb|AY107334.1| Zea mays PCO062090 mRNA sequence
          Length = 1457

 Score =  367 bits (185), Expect = 3e-98
 Identities = 350/405 (86%)
 Strand = Plus / Minus

                                                                        
Query: 236  tcaagcattcaggcccatctgcttcctcgtcttgccgacgaacaggtccttggatttgag 295
            |||| |||||||||||||||||||||||||||||| |||||| || |||  |||||||| 
Sbjct: 1100 tcaaccattcaggcccatctgcttcctcgtcttgctgacgaatagatccccggatttgat 1041

                                                                        
Query: 296  catccccggtatgcacccggtgagcgtcaggtagggcagctgcgccagcccttccttcct 355
            ||| || || | ||||||| ||||||||||  | || | ||| |||||||||||||||||
Sbjct: 1040 catgcctggcaagcacccgctgagcgtcagcaatggaaactgagccagcccttccttcct 981

                                                                        
Query: 356  tcccagggagacgatcgccagcgggaacccggtgctgtaggtggcgagcttgctcggagg 415
            ||| || ||||||| |||||||||  | ||||||||||| || || || |||||   |||
Sbjct: 980  tccaagagagacgagcgccagcggatagccggtgctgtaagtcgccagtttgctgttagg 921

                                                                        
Query: 416  cgaccccttgatcagtagcttcaggttcttcgctaccagcagcgcgtgcttctgggcgag 475
                |||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 920  gagacccttggtcagtagcttcaggttcttcgccactagcagcgcgtgcttctgggcgag 861

                                                                        
Query: 476  gtacccttgtttgatttcaggaatatctgtgatgtcaccgattgcaaaaatgttatcgtg 535
            ||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
Sbjct: 860  gtacccttgtttgatttcaggaatatctgtgatgtcaccaatcgcaaaaatgttattaaa 801

                                                                        
Query: 536  acccttcactctcaagtccttctccaccattactcttcccttggtgtccaaagattcctt 595
            ||| |||||||| || ||||| |||||||||||||| |||||| | ||||| ||||||||
Sbjct: 800  acctttcactcttaaatccttttccaccattactctccccttgctatccaaggattcctt 741

                                                         
Query: 596  caggatggtatcatgtagccacgatgaactcagtggcttgccaat 640
             ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 740  taggatggtatcatgtagccacgacgaactcagtggctttccaat 696
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>dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029P18, full
            insert sequence
          Length = 2277

 Score =  192 bits (97), Expect = 1e-45
 Identities = 181/209 (86%)
 Strand = Plus / Minus

                                                                        
Query: 440  gttcttcgctaccagcagcgcgtgcttctgggcgaggtacccttgtttgatttcaggaat 499
            |||||| ||||| ||||| || ||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 1896 gttctttgctactagcagagcatgcttatgggcaaggtaaccttgcttaatttcaggaat 1837

                                                                        
Query: 500  atctgtgatgtcaccgattgcaaaaatgttatcgtgacccttcactctcaagtccttctc 559
            ||||||||||||||| ||||||||||||||||  | ||| || | ||| || ||||| ||
Sbjct: 1836 atctgtgatgtcaccaattgcaaaaatgttattataaccttttattcttaaatccttttc 1777

                                                                        
Query: 560  caccattactcttcccttggtgtccaaagattccttcaggatggtatcatgtagccacga 619
            |||||||| |||||||||| ||||||| |||||||| || ||||||||||||||||| ||
Sbjct: 1776 caccattagtcttcccttgttgtccaaggattcctttagaatggtatcatgtagccatga 1717

                                         
Query: 620  tgaactcagtggcttgccaatacacacaa 648
            |||||| |||||||| || ||||||||||
Sbjct: 1716 tgaactgagtggcttaccgatacacacaa 1688
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  159 bits (80), Expect = 1e-35
 Identities = 137/156 (87%)
 Strand = Plus / Minus

                                                                           
Query: 493     caggaatatctgtgatgtcaccgattgcaaaaatgttatcgtgacccttcactctcaagt 552
               |||||||||||||||||||||| ||||||||||||||||  | ||| || | ||| || |
Sbjct: 2778367 caggaatatctgtgatgtcaccaattgcaaaaatgttattataaccttttattcttaaat 2778308

                                                                           
Query: 553     ccttctccaccattactcttcccttggtgtccaaagattccttcaggatggtatcatgta 612
               |||| |||||||||| |||||||||| ||||||| |||||||| || |||||||||||||
Sbjct: 2778307 ccttttccaccattagtcttcccttgttgtccaaggattcctttagaatggtatcatgta 2778248

                                                   
Query: 613     gccacgatgaactcagtggcttgccaatacacacaa 648
               |||| |||||||| |||||||| || ||||||||||
Sbjct: 2778247 gccatgatgaactgagtggcttaccgatacacacaa 2778212
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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score =  159 bits (80), Expect = 1e-35
 Identities = 137/156 (87%)
 Strand = Plus / Minus

                                                                         
Query: 493   caggaatatctgtgatgtcaccgattgcaaaaatgttatcgtgacccttcactctcaagt 552
             |||||||||||||||||||||| ||||||||||||||||  | ||| || | ||| || |
Sbjct: 46595 caggaatatctgtgatgtcaccaattgcaaaaatgttattataaccttttattcttaaat 46536

                                                                         
Query: 553   ccttctccaccattactcttcccttggtgtccaaagattccttcaggatggtatcatgta 612
             |||| |||||||||| |||||||||| ||||||| |||||||| || |||||||||||||
Sbjct: 46535 ccttttccaccattagtcttcccttgttgtccaaggattcctttagaatggtatcatgta 46476

                                                 
Query: 613   gccacgatgaactcagtggcttgccaatacacacaa 648
             |||| |||||||| |||||||| || ||||||||||
Sbjct: 46475 gccatgatgaactgagtggcttaccgatacacacaa 46440
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>ref|NM_114287.2| Arabidopsis thaliana disulfide oxidoreductase/ electron carrier/
            oxidoreductase AT3G44190 mRNA, complete cds
          Length = 1517

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 257  cttcctcgtcttgccgacgaacaggtccttggatttga 294
            |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 1274 cttcctcgtcttcccgacaaacagatccttagatttga 1237
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>gb|AC148001.6| Mus musculus BAC clone RP24-82P9 from chromosome 18, complete sequence
          Length = 181022

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 210    tttgttttgcctggagatgggc 231
              ||||||||||||||||||||||
Sbjct: 129624 tttgttttgcctggagatgggc 129603
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>ref|XM_422763.1| PREDICTED: Gallus gallus similar to SUMO1/sentrin specific protease 5
            (LOC424955), mRNA
          Length = 3015

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 87   tacatgtacattcacacttctg 108
            ||||||||||||||||||||||
Sbjct: 1804 tacatgtacattcacacttctg 1825
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>emb|AL353814.1|ATF26G5 Arabidopsis thaliana DNA chromosome 3, BAC clone F26G5
          Length = 102873

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 257   cttcctcgtcttgccgacgaacaggtccttggatttga 294
             |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 83341 cttcctcgtcttcccgacaaacagatccttagatttga 83378
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>gb|BT008451.1| Arabidopsis thaliana At3g44190 gene, complete cds
          Length = 1104

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 257  cttcctcgtcttgccgacgaacaggtccttggatttga 294
            |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 1068 cttcctcgtcttcccgacaaacagatccttagatttga 1031
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>emb|BX823155.1|CNS0A7AM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB93ZH08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1316

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 257  cttcctcgtcttgccgacgaacaggtccttggatttga 294
            |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 1103 cttcctcgtcttcccgacaaacagatccttagatttga 1066
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>emb|BX823570.1|CNS0A6LH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZG01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1359

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 257  cttcctcgtcttgccgacgaacaggtccttggatttga 294
            |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 1136 cttcctcgtcttcccgacaaacagatccttagatttga 1099
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>gb|AY084651.1| Arabidopsis thaliana clone 114123 mRNA, complete sequence
          Length = 1505

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 257  cttcctcgtcttgccgacgaacaggtccttggatttga 294
            |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 1274 cttcctcgtcttcccgacaaacagatccttagatttga 1237
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>gb|BT002026.1| Arabidopsis thaliana putative protein (At3g44190) mRNA, complete cds
          Length = 1423

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 257  cttcctcgtcttgccgacgaacaggtccttggatttga 294
            |||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 1164 cttcctcgtcttcccgacaaacagatccttagatttga 1127
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>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 334   gctgcgccagcccttccttccttcc 358
             ||||| |||||||||||||||||||
Sbjct: 93611 gctgccccagcccttccttccttcc 93635
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>gb|AC153139.5| Mus musculus BAC clone RP23-411M4 from chromosome 13, complete sequence
          Length = 192541

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 334    gctgcgccagcccttccttccttcc 358
              ||||| |||||||||||||||||||
Sbjct: 161962 gctgccccagcccttccttccttcc 161986
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>gb|AC064856.5| Homo sapiens BAC clone RP11-264N11 from 2, complete sequence
          Length = 107706

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  ggtccttggatttgagcatcc 300
            |||||||||||||||||||||
Sbjct: 4867 ggtccttggatttgagcatcc 4847
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>gb|AC160651.2| Pan troglodytes BAC clone CH251-489P13 from chromosome unknown,
             complete sequence
          Length = 209305

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ggtccttggatttgagcatcc 300
             |||||||||||||||||||||
Sbjct: 12506 ggtccttggatttgagcatcc 12486
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>ref|NM_116172.3| Arabidopsis thaliana unknown protein AT3G63070 mRNA, complete cds
          Length = 4429

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  aaatgttcatcaccattctc 131
            ||||||||||||||||||||
Sbjct: 1525 aaatgttcatcaccattctc 1506
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>gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, complete sequence
          Length = 166451

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    tccttccttcccagggagac 367
              ||||||||||||||||||||
Sbjct: 111676 tccttccttcccagggagac 111695
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>gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, complete sequence
          Length = 203772

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    tcaggcccatctgcttcctc 263
              ||||||||||||||||||||
Sbjct: 182713 tcaggcccatctgcttcctc 182694
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>ref|XM_659299.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6787.2), mRNA
          Length = 1761

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 321  gtcaggtagggcagctgcgccagc 344
            |||||||||||||||||| |||||
Sbjct: 1175 gtcaggtagggcagctgctccagc 1152
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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 629    tggcttgccaatacacacaa 648
              ||||||||||||||||||||
Sbjct: 113510 tggcttgccaatacacacaa 113529
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>gb|AC140359.2| Mus musculus BAC clone RP24-240P8 from chromosome 5, complete sequence
          Length = 167021

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tgcgtacatgtacattcaca 102
             ||||||||||||||||||||
Sbjct: 74880 tgcgtacatgtacattcaca 74899
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>gb|AC122045.3| Mus musculus BAC clone RP24-449H18 from 5, complete sequence
          Length = 142673

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tgcgtacatgtacattcaca 102
             ||||||||||||||||||||
Sbjct: 96839 tgcgtacatgtacattcaca 96858
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>gb|AC110573.11| Mus musculus chromosome 16, clone RP23-322A15, complete sequence
          Length = 190173

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 485    tttgatttcaggaatatctg 504
              ||||||||||||||||||||
Sbjct: 100847 tttgatttcaggaatatctg 100866
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>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence
          Length = 38345

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   cgcgtgcttctgggcgaggt 477
             ||||||||||||||||||||
Sbjct: 35606 cgcgtgcttctgggcgaggt 35587
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>gb|AC166575.1| Mus musculus BAC clone RP23-99E16 from chromosome 17, complete sequence
          Length = 200353

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   gccagcccttccttccttcc 358
             ||||||||||||||||||||
Sbjct: 41557 gccagcccttccttccttcc 41576
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>emb|AL139328.8| Human DNA sequence from clone RP11-84N7 on chromosome 13 Contains part
             of the DGKH gene for diacylglycerol kinase eta, complete
             sequence
          Length = 148430

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   agcccttccttccttcccag 361
             ||||||||||||||||||||
Sbjct: 73093 agcccttccttccttcccag 73074
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>emb|AL020995.14|HS117O3 Human DNA sequence from clone RP1-117O3 on chromosome 1p33-34.3 Contains
              the 3' end of a novel gene, the AK2 gene for adenylate
              kinase 2, the gene for ornithine decarboxylase-like (ODC-p)
              and a CpG island, complete sequence
          Length = 150997

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gccagcccttccttccttcc 358
              ||||||||||||||||||||
Sbjct: 145628 gccagcccttccttccttcc 145647
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>gb|AC074336.14| Mus musculus Strain C57BL6/J chromosome 1 BAC, RP23-366C17, Complete
              Sequence, complete sequence
          Length = 217768

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    cttccttccttcccagggag 365
              ||||||||||||||||||||
Sbjct: 149455 cttccttccttcccagggag 149474
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>emb|Z11595.1|EBHCOMPMR Eptatretus burgeri partial mRNA for hagfish complement
          Length = 4902

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 543  actctcaagtccttctccac 562
            ||||||||||||||||||||
Sbjct: 2681 actctcaagtccttctccac 2662
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>emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8
          Length = 38397

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 331   gcagctgcgccagcccttccttcc 354
             |||||||||||||||| |||||||
Sbjct: 26291 gcagctgcgccagcccatccttcc 26268
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>gb|AC090881.9| Mus Musculus Strain C57BL6/J chromosome 17 BAC, RP23-465G4, Complete
             Sequence, complete sequence
          Length = 167475

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   gccagcccttccttccttcc 358
             ||||||||||||||||||||
Sbjct: 15373 gccagcccttccttccttcc 15354
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>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181360

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 331   gcagctgcgccagcccttccttcc 354
             |||||||||||||||| |||||||
Sbjct: 22682 gcagctgcgccagcccatccttcc 22659
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>gb|AY119282.1| Drosophila melanogaster SD27341 full insert cDNA
          Length = 2338

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 331  gcagctgcgccagcccttccttcc 354
            |||||||||||||||| |||||||
Sbjct: 1245 gcagctgcgccagcccatccttcc 1268
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>ref|NM_206602.1| Drosophila melanogaster CG11418-RB, transcript variant B (CG11418),
           mRNA
          Length = 1372

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 331 gcagctgcgccagcccttccttcc 354
           |||||||||||||||| |||||||
Sbjct: 300 gcagctgcgccagcccatccttcc 323
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>ref|NM_130548.2| Drosophila melanogaster CG11418-RA, transcript variant A (CG11418),
            mRNA
          Length = 2317

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 331  gcagctgcgccagcccttccttcc 354
            |||||||||||||||| |||||||
Sbjct: 1245 gcagctgcgccagcccatccttcc 1268
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>gb|AC106822.3| Homo sapiens chromosome 5 clone RP11-772C9, complete sequence
          Length = 115988

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    cccttccttccttcccaggg 363
              ||||||||||||||||||||
Sbjct: 105831 cccttccttccttcccaggg 105812
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>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 164252

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 331   gcagctgcgccagcccttccttcc 354
             |||||||||||||||| |||||||
Sbjct: 82197 gcagctgcgccagcccatccttcc 82174
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>gb|AC015468.5|AC015468 Homo sapiens chromosome 8, clone RP11-369E15, complete sequence
          Length = 189662

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ccagcccttccttccttccc 359
              ||||||||||||||||||||
Sbjct: 111608 ccagcccttccttccttccc 111627
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>gb|AC019181.4| Homo sapiens BAC clone RP11-272E3 from 2, complete sequence
          Length = 190998

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   tgatgtcaccgattgcaaaa 524
             ||||||||||||||||||||
Sbjct: 82239 tgatgtcaccgattgcaaaa 82258
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 454    gcagcgcgtgcttctgggcgaggt 477
              ||||||||||||||||| ||||||
Sbjct: 127601 gcagcgcgtgcttctggacgaggt 127624
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>gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  gtttatttgttttgcctgga 224
            ||||||||||||||||||||
Sbjct: 5166 gtttatttgttttgcctgga 5147
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>gb|AC006142.1|AC006142 Homo sapiens PAC clone RP4-572A3, complete sequence
          Length = 143623

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   cccttccttccttcccaggg 363
             ||||||||||||||||||||
Sbjct: 58827 cccttccttccttcccaggg 58808
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>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete
              sequence
          Length = 308311

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 331    gcagctgcgccagcccttccttcc 354
              |||||||||||||||| |||||||
Sbjct: 193517 gcagctgcgccagcccatccttcc 193494
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>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete
             sequence
          Length = 201738

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 557   ctccaccattactcttcccttggt 580
             |||| |||||||||||||||||||
Sbjct: 81483 ctcccccattactcttcccttggt 81460
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>gb|AC134554.6| Mus musculus BAC clone RP24-313F7 from chromosome 15, complete sequence
          Length = 148029

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcaggcccatctgcttcctc 263
             ||||||||||||||||||||
Sbjct: 93666 tcaggcccatctgcttcctc 93647
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>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 340    ccagcccttccttccttcccaggg 363
              |||||||||| |||||||||||||
Sbjct: 148254 ccagcccttctttccttcccaggg 148231
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>emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20O10
          Length = 83122

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   aaatgttcatcaccattctc 131
             ||||||||||||||||||||
Sbjct: 48056 aaatgttcatcaccattctc 48037
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>gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, complete sequence
          Length = 228174

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   gccagcccttccttccttcc 358
             ||||||||||||||||||||
Sbjct: 32454 gccagcccttccttccttcc 32473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,118,797
Number of Sequences: 3902068
Number of extensions: 6118797
Number of successful extensions: 597264
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 596739
Number of HSP's gapped (non-prelim): 518
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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