ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596540.1| Saccharum officinarum clone SCCCLR2001D07, comple... 76 8e-11
2gb|AY105120.1| Zea mays PCO133097 mRNA sequence 68 2e-08
3ref|XM_468227.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
4ref|XM_507542.1| PREDICTED Oryza sativa (japonica cultivar-group... 58 2e-05
5ref|XM_507541.1| PREDICTED Oryza sativa (japonica cultivar-group... 58 2e-05
6ref|XM_507023.2| PREDICTED Oryza sativa (japonica cultivar-group... 58 2e-05
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
8dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
9dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
10dbj|AK119191.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
11dbj|AK106174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
12dbj|AK104731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
13dbj|AK068367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
14gb|BT014207.1| Lycopersicon esculentum clone 133384F, mRNA sequence 48 0.017
15emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chro... 44 0.27
16ref|NM_101485.2| Arabidopsis thaliana unknown protein AT1G16180 ... 40 4.2
17dbj|AK221101.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 4.2
18emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, c... 40 4.2
19gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D1... 40 4.2 
>gb|AY596540.1| Saccharum officinarum clone SCCCLR2001D07, complete sequence
          Length = 1804

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            |||||||| ||||| |||| ||| ||||| || ||||| |||||||| ||||| || |||
Sbjct: 1411 tccctgtcggggaagaggatgggtgcaacaagcgaccatatgaacagacctgccgtcgcc 1352

                                                       
Query: 280  cactgggtcgngatcctgacccanacagacggncacccgacat 322
            |||||||| |  ||||||||||| ||||| || ||||| ||||
Sbjct: 1351 cactgggttgcaatcctgacccagacagatggccacccaacat 1309
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>gb|AY105120.1| Zea mays PCO133097 mRNA sequence
          Length = 1778

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            |||||||| || || |||| ||| ||||| || ||||| |||||||| ||||| || |||
Sbjct: 1460 tccctgtcgggaaagaggacgggtgcaacaagcgaccatatgaacagacctgccgtcgcc 1401

                                                       
Query: 280  cactgggtcgngatcctgacccanacagacggncacccgacat 322
            |||||||| |  ||||||||||| ||||| || ||||| ||||
Sbjct: 1400 cactgggttgcaatcctgacccagacagatggccacccaacat 1358
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>ref|XM_468227.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1587

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1348 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1289

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1288 cactgggttgcaatcctgacccaaacggatggccaccc 1251
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>ref|XM_507542.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA
          Length = 1696

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1355 cactgggttgcaatcctgacccaaacggatggccaccc 1318
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>ref|XM_507541.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA
          Length = 1696

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1355 cactgggttgcaatcctgacccaaacggatggccaccc 1318
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>ref|XM_507023.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA
          Length = 1741

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1430 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1371

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1370 cactgggttgcaatcctgacccaaacggatggccaccc 1333
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                            
Query: 220      tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
                ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 33709595 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 33709654

                                                      
Query: 280      cactgggtcgngatcctgacccanacagacggncaccc 317
                |||||||| |  ||||||||||| || || || |||||
Sbjct: 33709655 cactgggttgcaatcctgacccaaacggatggccaccc 33709692
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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                         
Query: 220   tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
             ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 78002 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 78061

                                                   
Query: 280   cactgggtcgngatcctgacccanacagacggncaccc 317
             |||||||| |  ||||||||||| || || || |||||
Sbjct: 78062 cactgggttgcaatcctgacccaaacggatggccaccc 78099
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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                         
Query: 220   tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
             ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 40462 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 40521

                                                   
Query: 280   cactgggtcgngatcctgacccanacagacggncaccc 317
             |||||||| |  ||||||||||| || || || |||||
Sbjct: 40522 cactgggttgcaatcctgacccaaacggatggccaccc 40559
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>dbj|AK119191.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H03, full
            insert sequence
          Length = 1587

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1348 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1289

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1288 cactgggttgcaatcctgacccaaacggatggccaccc 1251
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>dbj|AK106174.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C06, full
            insert sequence
          Length = 1696

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1355 cactgggttgcaatcctgacccaaacggatggccaccc 1318
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>dbj|AK104731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C07, full
            insert sequence
          Length = 1696

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1355 cactgggttgcaatcctgacccaaacggatggccaccc 1318
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>dbj|AK068367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147C17, full
            insert sequence
          Length = 1742

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                        
Query: 220  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 279
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1430 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1371

                                                  
Query: 280  cactgggtcgngatcctgacccanacagacggncaccc 317
            |||||||| |  ||||||||||| || || || |||||
Sbjct: 1370 cactgggttgcaatcctgacccaaacggatggccaccc 1333
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>gb|BT014207.1| Lycopersicon esculentum clone 133384F, mRNA sequence
          Length = 1582

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                        
Query: 217  aactccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgtt 276
            ||||| ||||| |||||||| |  ||||||||  | |||||||||||||   |||| |||
Sbjct: 1371 aactctctgtccgggaacagaattggagcaacctgagaccagatgaacaaagctgcagtt 1312

                                                     
Query: 277  gcccactgggtcgngatcctgacccanacagacggncaccc 317
            ||||||   |||  |||||||||||| ||||| || |||||
Sbjct: 1311 gcccacccagtcacgatcctgacccagacagatggccaccc 1271
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>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete
              sequence
          Length = 249021

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 266    ggcctgctgttgcccactgggt 287
              ||||||||||||||||||||||
Sbjct: 166856 ggcctgctgttgcccactgggt 166835
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>ref|NM_101485.2| Arabidopsis thaliana unknown protein AT1G16180 mRNA, complete cds
          Length = 1471

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 240  gggagcaacgagggaccagatgaa 263
            ||||||||| ||||||||||||||
Sbjct: 1212 gggagcaacaagggaccagatgaa 1189
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>dbj|AK221101.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-88-C14
          Length = 391

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 gggagcaacgagggaccagatgaa 263
           ||||||||| ||||||||||||||
Sbjct: 183 gggagcaacaagggaccagatgaa 160
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>emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, complete sequence
          Length = 157845

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tttgctcacacaatattaca 100
              ||||||||||||||||||||
Sbjct: 123362 tttgctcacacaatattaca 123381
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>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete
             sequence
          Length = 80442

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 240   gggagcaacgagggaccagatgaa 263
             ||||||||| ||||||||||||||
Sbjct: 77894 gggagcaacaagggaccagatgaa 77871


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,520,498
Number of Sequences: 3902068
Number of extensions: 1520498
Number of successful extensions: 24689
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24651
Number of HSP's gapped (non-prelim): 38
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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