ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8j17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF542967.1| Triticum aestivum annexin P35-like mRNA, partial ... 62 2e-07
2emb|X98244.2|ZMANNP33 Z.mays mRNA for annexin p33 50 9e-04
3gb|AY105151.1| Zea mays PCO072293 mRNA sequence 50 9e-04
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.003
5dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.003
6dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.003
7ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA 40 0.85
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.85
9dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.85
10dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.85
11dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.85
12gb|BC088398.1| Rattus norvegicus sorbitol dehydrogenase, mRNA (c... 38 3.4
13ref|NM_017052.2| Rattus norvegicus sorbitol dehydrogenase (Sord)... 38 3.4
14gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosom... 38 3.4
15gb|AY387057.1| Rattus norvegicus LRRGT00071 mRNA, complete cds 38 3.4
16emb|X74593.1|RNSDHMR R.norvegicus mRNA for sorbitol dehydrogenase 38 3.4
17emb|X59037.1|RNSD Rat mRNA for sorbitol dehydrogenase 38 3.4
18gb|BC098919.1| Rattus norvegicus sorbitol dehydrogenase, mRNA (c... 38 3.4
19gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome... 38 3.4
20gb|AC092530.35| Rattus norvegicus clone rp32-28p17, complete seq... 38 3.4
21gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419... 38 3.4
22gb|AC154904.4| Mus musculus BAC clone RP23-416C3 from chromosome... 38 3.4
23dbj|AP000427.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 3.4
24gb|AC005304.1|AC005304 Homo sapiens chromosome 17, clone hRPK.13... 38 3.4
25gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, comple... 38 3.4
26emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chrom... 38 3.4

>gb|AF542967.1| Triticum aestivum annexin P35-like mRNA, partial sequence
          Length = 766

 Score = 61.9 bits (31), Expect = 2e-07
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 39  tccagggggacgctgntcctcttctggtacgcctnctttat 79
           ||||| ||||||||| |||||||||||||||||| ||||||
Sbjct: 642 tccagcgggacgctgttcctcttctggtacgcctcctttat 602



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>emb|X98244.2|ZMANNP33 Z.mays mRNA for annexin p33
          Length = 1277

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 38  ctccagggggacgctgntcctcttctggtacgcctnctt 76
           |||||| || |||||| |||||||||||||||||| |||
Sbjct: 960 ctccagcggcacgctgttcctcttctggtacgcctcctt 922



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>gb|AY105151.1| Zea mays PCO072293 mRNA sequence
          Length = 1369

 Score = 50.1 bits (25), Expect = 9e-04
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 38  ctccagggggacgctgntcctcttctggtacgcctnctt 76
           |||||| || |||||| |||||||||||||||||| |||
Sbjct: 977 ctccagcggcacgctgttcctcttctggtacgcctcctt 939



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 38      ctccagggggacgctgntcctcttctggtacgcct 72
               |||||| ||||| ||| ||||||||||||||||||
Sbjct: 6264228 ctccagcgggacactgttcctcttctggtacgcct 6264194



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>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0516A04
          Length = 145107

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 38    ctccagggggacgctgntcctcttctggtacgcct 72
             |||||| ||||| ||| ||||||||||||||||||
Sbjct: 58304 ctccagcgggacactgttcctcttctggtacgcct 58270



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>dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full
           insert sequence
          Length = 1274

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 38  ctccagggggacgctgntcctcttctggtacgcct 72
           |||||| ||||| ||| ||||||||||||||||||
Sbjct: 977 ctccagcgggacactgttcctcttctggtacgcct 943



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>ref|XM_467846.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1223

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 60/74 (81%)
 Strand = Plus / Minus

                                                                        
Query: 6    tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65
            |||||||||||||| || || | ||||||   |||||  ||||| ||| | |||||||||
Sbjct: 1023 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 964

                          
Query: 66   tacgcctnctttat 79
            || |||| ||||||
Sbjct: 963  taggcctcctttat 950



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 60/74 (81%)
 Strand = Plus / Plus

                                                                            
Query: 6        tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65
                |||||||||||||| || || | ||||||   |||||  ||||| ||| | |||||||||
Sbjct: 31716897 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 31716956

                              
Query: 66       tacgcctnctttat 79
                || |||| ||||||
Sbjct: 31716957 taggcctcctttat 31716970



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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0627E03
          Length = 159861

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 60/74 (81%)
 Strand = Plus / Plus

                                                                         
Query: 6     tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65
             |||||||||||||| || || | ||||||   |||||  ||||| ||| | |||||||||
Sbjct: 12695 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 12754

                           
Query: 66    tacgcctnctttat 79
             || |||| ||||||
Sbjct: 12755 taggcctcctttat 12768



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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_G09
          Length = 109672

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 60/74 (81%)
 Strand = Plus / Plus

                                                                         
Query: 6     tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65
             |||||||||||||| || || | ||||||   |||||  ||||| ||| | |||||||||
Sbjct: 96684 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 96743

                           
Query: 66    tacgcctnctttat 79
             || |||| ||||||
Sbjct: 96744 taggcctcctttat 96757



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>dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F07, full
            insert sequence
          Length = 1223

 Score = 40.1 bits (20), Expect = 0.85
 Identities = 60/74 (81%)
 Strand = Plus / Minus

                                                                        
Query: 6    tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65
            |||||||||||||| || || | ||||||   |||||  ||||| ||| | |||||||||
Sbjct: 1023 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 964

                          
Query: 66   tacgcctnctttat 79
            || |||| ||||||
Sbjct: 963  taggcctcctttat 950



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>gb|BC088398.1| Rattus norvegicus sorbitol dehydrogenase, mRNA (cDNA clone
            IMAGE:7112546), partial cds
          Length = 2197

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   acagccttctccaggggga 48
            |||||||||||||||||||
Sbjct: 1078 acagccttctccaggggga 1060



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>ref|NM_017052.2| Rattus norvegicus sorbitol dehydrogenase (Sord), mRNA
          Length = 2197

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   acagccttctccaggggga 48
            |||||||||||||||||||
Sbjct: 1078 acagccttctccaggggga 1060



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>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete
           sequence
          Length = 199646

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  aaacagccttctccagggg 46
           |||||||||||||||||||
Sbjct: 154 aaacagccttctccagggg 172



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>gb|AY387057.1| Rattus norvegicus LRRGT00071 mRNA, complete cds
          Length = 2433

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 30  acagccttctccaggggga 48
           |||||||||||||||||||
Sbjct: 941 acagccttctccaggggga 923



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>emb|X74593.1|RNSDHMR R.norvegicus mRNA for sorbitol dehydrogenase
          Length = 2277

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   acagccttctccaggggga 48
            |||||||||||||||||||
Sbjct: 1177 acagccttctccaggggga 1159



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>emb|X59037.1|RNSD Rat mRNA for sorbitol dehydrogenase
          Length = 1358

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   acagccttctccaggggga 48
            |||||||||||||||||||
Sbjct: 1018 acagccttctccaggggga 1000



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>gb|BC098919.1| Rattus norvegicus sorbitol dehydrogenase, mRNA (cDNA clone
            IMAGE:7373210), partial cds
          Length = 2122

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   acagccttctccaggggga 48
            |||||||||||||||||||
Sbjct: 1025 acagccttctccaggggga 1007



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>gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome 16, complete sequence
          Length = 148167

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    gaaacagccttctccaggg 45
             |||||||||||||||||||
Sbjct: 56238 gaaacagccttctccaggg 56220



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>gb|AC092530.35| Rattus norvegicus clone rp32-28p17, complete sequence
          Length = 221618

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    acagccttctccaggggga 48
             |||||||||||||||||||
Sbjct: 66719 acagccttctccaggggga 66737



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>gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419L20, complete sequence
          Length = 175742

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    gaaacagccttctccaggg 45
             |||||||||||||||||||
Sbjct: 10104 gaaacagccttctccaggg 10122



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>gb|AC154904.4| Mus musculus BAC clone RP23-416C3 from chromosome 12, complete sequence
          Length = 194547

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     aaacagccttctccagggg 46
              |||||||||||||||||||
Sbjct: 138013 aaacagccttctccagggg 138031



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>dbj|AP000427.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1171G1
          Length = 187189

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    gaaacagccttctccaggg 45
             |||||||||||||||||||
Sbjct: 85302 gaaacagccttctccaggg 85284



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>gb|AC005304.1|AC005304 Homo sapiens chromosome 17, clone hRPK.131_K_5, complete sequence
          Length = 164017

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     catagtctctggttgtgtc 22
             |||||||||||||||||||
Sbjct: 73384 catagtctctggttgtgtc 73366



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>gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, complete sequence
          Length = 228657

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     gaaacagccttctccaggg 45
              |||||||||||||||||||
Sbjct: 109598 gaaacagccttctccaggg 109580



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>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete
             sequence
          Length = 110623

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 17    tgtgtccttggaaacagccttct 39
             ||||||||||| |||||||||||
Sbjct: 65004 tgtgtccttgggaacagccttct 64982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 592,516
Number of Sequences: 3902068
Number of extensions: 592516
Number of successful extensions: 66507
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66458
Number of HSP's gapped (non-prelim): 49
length of query: 81
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 60
effective length of database: 17,151,101,840
effective search space: 1029066110400
effective search space used: 1029066110400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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