| Clone Name | rbags8j17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF542967.1| Triticum aestivum annexin P35-like mRNA, partial sequence Length = 766 Score = 61.9 bits (31), Expect = 2e-07 Identities = 38/41 (92%) Strand = Plus / Minus Query: 39 tccagggggacgctgntcctcttctggtacgcctnctttat 79 ||||| ||||||||| |||||||||||||||||| |||||| Sbjct: 642 tccagcgggacgctgttcctcttctggtacgcctcctttat 602
>emb|X98244.2|ZMANNP33 Z.mays mRNA for annexin p33 Length = 1277 Score = 50.1 bits (25), Expect = 9e-04 Identities = 35/39 (89%) Strand = Plus / Minus Query: 38 ctccagggggacgctgntcctcttctggtacgcctnctt 76 |||||| || |||||| |||||||||||||||||| ||| Sbjct: 960 ctccagcggcacgctgttcctcttctggtacgcctcctt 922
>gb|AY105151.1| Zea mays PCO072293 mRNA sequence Length = 1369 Score = 50.1 bits (25), Expect = 9e-04 Identities = 35/39 (89%) Strand = Plus / Minus Query: 38 ctccagggggacgctgntcctcttctggtacgcctnctt 76 |||||| || |||||| |||||||||||||||||| ||| Sbjct: 977 ctccagcggcacgctgttcctcttctggtacgcctcctt 939
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.003 Identities = 32/35 (91%) Strand = Plus / Minus Query: 38 ctccagggggacgctgntcctcttctggtacgcct 72 |||||| ||||| ||| |||||||||||||||||| Sbjct: 6264228 ctccagcgggacactgttcctcttctggtacgcct 6264194
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 48.1 bits (24), Expect = 0.003 Identities = 32/35 (91%) Strand = Plus / Minus Query: 38 ctccagggggacgctgntcctcttctggtacgcct 72 |||||| ||||| ||| |||||||||||||||||| Sbjct: 58304 ctccagcgggacactgttcctcttctggtacgcct 58270
>dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full insert sequence Length = 1274 Score = 48.1 bits (24), Expect = 0.003 Identities = 32/35 (91%) Strand = Plus / Minus Query: 38 ctccagggggacgctgntcctcttctggtacgcct 72 |||||| ||||| ||| |||||||||||||||||| Sbjct: 977 ctccagcgggacactgttcctcttctggtacgcct 943
>ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1223 Score = 40.1 bits (20), Expect = 0.85 Identities = 60/74 (81%) Strand = Plus / Minus Query: 6 tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65 |||||||||||||| || || | |||||| ||||| ||||| ||| | ||||||||| Sbjct: 1023 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 964 Query: 66 tacgcctnctttat 79 || |||| |||||| Sbjct: 963 taggcctcctttat 950
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 0.85 Identities = 60/74 (81%) Strand = Plus / Plus Query: 6 tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65 |||||||||||||| || || | |||||| ||||| ||||| ||| | ||||||||| Sbjct: 31716897 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 31716956 Query: 66 tacgcctnctttat 79 || |||| |||||| Sbjct: 31716957 taggcctcctttat 31716970
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 40.1 bits (20), Expect = 0.85 Identities = 60/74 (81%) Strand = Plus / Plus Query: 6 tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65 |||||||||||||| || || | |||||| ||||| ||||| ||| | ||||||||| Sbjct: 12695 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 12754 Query: 66 tacgcctnctttat 79 || |||| |||||| Sbjct: 12755 taggcctcctttat 12768
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 40.1 bits (20), Expect = 0.85 Identities = 60/74 (81%) Strand = Plus / Plus Query: 6 tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65 |||||||||||||| || || | |||||| ||||| ||||| ||| | ||||||||| Sbjct: 96684 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 96743 Query: 66 tacgcctnctttat 79 || |||| |||||| Sbjct: 96744 taggcctcctttat 96757
>dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F07, full insert sequence Length = 1223 Score = 40.1 bits (20), Expect = 0.85 Identities = 60/74 (81%) Strand = Plus / Minus Query: 6 tagtctctggttgtgtccttggaaacagccttctccagggggacgctgntcctcttctgg 65 |||||||||||||| || || | |||||| ||||| ||||| ||| | ||||||||| Sbjct: 1023 tagtctctggttgtatctttagcaacagctcgctccaatgggacactgtttctcttctgg 964 Query: 66 tacgcctnctttat 79 || |||| |||||| Sbjct: 963 taggcctcctttat 950
>gb|BC088398.1| Rattus norvegicus sorbitol dehydrogenase, mRNA (cDNA clone IMAGE:7112546), partial cds Length = 2197 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 1078 acagccttctccaggggga 1060
>ref|NM_017052.2| Rattus norvegicus sorbitol dehydrogenase (Sord), mRNA Length = 2197 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 1078 acagccttctccaggggga 1060
>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete sequence Length = 199646 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 aaacagccttctccagggg 46 ||||||||||||||||||| Sbjct: 154 aaacagccttctccagggg 172
>gb|AY387057.1| Rattus norvegicus LRRGT00071 mRNA, complete cds Length = 2433 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 941 acagccttctccaggggga 923
>emb|X74593.1|RNSDHMR R.norvegicus mRNA for sorbitol dehydrogenase Length = 2277 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 1177 acagccttctccaggggga 1159
>emb|X59037.1|RNSD Rat mRNA for sorbitol dehydrogenase Length = 1358 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 1018 acagccttctccaggggga 1000
>gb|BC098919.1| Rattus norvegicus sorbitol dehydrogenase, mRNA (cDNA clone IMAGE:7373210), partial cds Length = 2122 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 1025 acagccttctccaggggga 1007
>gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome 16, complete sequence Length = 148167 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gaaacagccttctccaggg 45 ||||||||||||||||||| Sbjct: 56238 gaaacagccttctccaggg 56220
>gb|AC092530.35| Rattus norvegicus clone rp32-28p17, complete sequence Length = 221618 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 acagccttctccaggggga 48 ||||||||||||||||||| Sbjct: 66719 acagccttctccaggggga 66737
>gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419L20, complete sequence Length = 175742 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gaaacagccttctccaggg 45 ||||||||||||||||||| Sbjct: 10104 gaaacagccttctccaggg 10122
>gb|AC154904.4| Mus musculus BAC clone RP23-416C3 from chromosome 12, complete sequence Length = 194547 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 aaacagccttctccagggg 46 ||||||||||||||||||| Sbjct: 138013 aaacagccttctccagggg 138031
>dbj|AP000427.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1171G1 Length = 187189 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gaaacagccttctccaggg 45 ||||||||||||||||||| Sbjct: 85302 gaaacagccttctccaggg 85284
>gb|AC005304.1|AC005304 Homo sapiens chromosome 17, clone hRPK.131_K_5, complete sequence Length = 164017 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 catagtctctggttgtgtc 22 ||||||||||||||||||| Sbjct: 73384 catagtctctggttgtgtc 73366
>gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, complete sequence Length = 228657 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gaaacagccttctccaggg 45 ||||||||||||||||||| Sbjct: 109598 gaaacagccttctccaggg 109580
>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete sequence Length = 110623 Score = 38.2 bits (19), Expect = 3.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 tgtgtccttggaaacagccttct 39 ||||||||||| ||||||||||| Sbjct: 65004 tgtgtccttgggaacagccttct 64982 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 592,516 Number of Sequences: 3902068 Number of extensions: 592516 Number of successful extensions: 66507 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66458 Number of HSP's gapped (non-prelim): 49 length of query: 81 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 60 effective length of database: 17,151,101,840 effective search space: 1029066110400 effective search space used: 1029066110400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)