ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC121137.18| Mus musculus chromosome 14, clone RP23-406K12, c... 44 0.48
2gb|AC123983.8| Pan troglodytes clone rp43-42n4, complete sequence 44 0.48
3gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.9
4gb|AC093813.3| Homo sapiens BAC clone RP11-362B23 from 7, comple... 42 1.9
5gb|AY490259.1| Geobacter metallireducens citrate synthase (gltA)... 42 1.9
6emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in ... 42 1.9
7gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, co... 40 7.5
8gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, compl... 40 7.5
9gb|AC157933.4| Mus musculus chromosome 5, clone RP24-189N4, comp... 40 7.5
10gb|AC138741.7| Mus musculus chromosome 1, clone RP24-260D21, com... 40 7.5
11gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chrom... 40 7.5
12gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromo... 40 7.5
13gb|AC182469.3| Pan troglodytes BAC clone CH251-496G17 from chrom... 40 7.5
14gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromo... 40 7.5
15gb|AC183918.1| Homo sapiens BAC clone RP11-170N9 from chromosome... 40 7.5
16gb|AC183532.3| Pan troglodytes BAC clone CH251-569N9 from chromo... 40 7.5
17gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete... 40 7.5
18gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complet... 40 7.5
19emb|CR388042.8| Zebrafish DNA sequence from clone CH211-254C12 i... 40 7.5
20emb|BX664743.23| Zebrafish DNA sequence from clone DKEY-11D20 in... 40 7.5
21emb|AJ297901.1|ZMA297901 Zea mays mRNA for basal layer antifunga... 40 7.5
22gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, co... 40 7.5
23gb|AC117623.7| Mus musculus chromosome 1, clone RP23-114L12, com... 40 7.5
24emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 o... 40 7.5
25gb|AC138772.4| Homo sapiens BAC clone RP11-1345A16 from UL, comp... 40 7.5
26gb|AC145212.1| Homo sapiens BAC clone RP11-1368F8 from UL, compl... 40 7.5
27emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12... 40 7.5
28emb|BX248243.23| Zebrafish DNA sequence from clone CH211-225L7 i... 40 7.5
29emb|CR376846.9| Zebrafish DNA sequence from clone CH211-240P12 i... 40 7.5
30emb|BX005225.20| Zebrafish DNA sequence from clone DKEY-34L15 in... 40 7.5
31emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chro... 40 7.5
32emb|CR589946.2| Human DNA sequence from clone WI2-679O21 on chro... 40 7.5
33emb|CR381535.11| Human DNA sequence from clone bP-2154M18 on chr... 40 7.5
34gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complet... 40 7.5
35gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, comp... 40 7.5
36gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, com... 40 7.5
37ref|XM_687203.1| PREDICTED: Danio rerio similar to LReO_3 (LOC56... 40 7.5
38ref|XM_689481.1| PREDICTED: Danio rerio similar to LReO_3 (LOC56... 40 7.5
39ref|XM_682830.1| PREDICTED: Danio rerio similar to LReO_3 (LOC55... 40 7.5
40ref|XM_685851.1| PREDICTED: Danio rerio similar to LReO_3 (LOC56... 40 7.5
41emb|CR381670.5| Human DNA sequence from clone bP-2189O9 on chrom... 40 7.5
42emb|BX784031.5| Zebrafish DNA sequence from clone DKEY-174E15 in... 40 7.5
43gb|AC138776.2| Homo sapiens BAC clone RP11-1277N13 from UL, comp... 40 7.5
44gb|AC138777.3| Homo sapiens BAC clone RP11-1220P14 from 2, compl... 40 7.5
45gb|AC097374.3| Homo sapiens BAC clone RP11-71B7 from 2, complete... 40 7.5
46emb|BX855590.3| Zebrafish DNA sequence from clone CH211-245N8, c... 40 7.5
47gb|AC148028.2| Homo sapiens chromosome UNKNOWN clone RP11-238G20... 40 7.5
48emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, ... 40 7.5
49emb|BX088583.12| Zebrafish DNA sequence from clone CH211-211K8 i... 40 7.5
50emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on ch... 40 7.5
51emb|AL354822.8| Human DNA sequence from clone RP11-474C22 on chr... 40 7.5
52emb|BX572084.5| Human DNA sequence from clone RP11-423O2 on chro... 40 7.5
53gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete se... 40 7.5
54emb|CR936401.6| Zebrafish DNA sequence from clone CH73-348K23 in... 40 7.5
55emb|AL355793.6| Human DNA sequence from clone RP4-694M10 on chro... 40 7.5
56emb|BX004987.9| Human DNA sequence from clone RP11-435B5 on chro... 40 7.5
57emb|CR392001.6| Zebrafish DNA sequence from clone DKEY-70B24 in ... 40 7.5
58gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 7.5 
>gb|AC121137.18| Mus musculus chromosome 14, clone RP23-406K12, complete sequence
          Length = 164557

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 507   acaatgcatcaacaccacccac 528
             ||||||||||||||||||||||
Sbjct: 30379 acaatgcatcaacaccacccac 30400
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>gb|AC123983.8| Pan troglodytes clone rp43-42n4, complete sequence
          Length = 187806

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 200   agacatccattgaaaaagaagg 221
             ||||||||||||||||||||||
Sbjct: 43464 agacatccattgaaaaagaagg 43443
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 518     acaccacccacctggtgcatt 538
               |||||||||||||||||||||
Sbjct: 1245200 acaccacccacctggtgcatt 1245220
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>gb|AC093813.3| Homo sapiens BAC clone RP11-362B23 from 7, complete sequence
          Length = 120466

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    tattacaatgtgggctcagga 79
             |||||||||||||||||||||
Sbjct: 28135 tattacaatgtgggctcagga 28115
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>gb|AY490259.1| Geobacter metallireducens citrate synthase (gltA) gene, complete
           cds
          Length = 1317

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 518 acaccacccacctggtgcatt 538
           |||||||||||||||||||||
Sbjct: 725 acaccacccacctggtgcatt 745
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>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7, complete
              sequence
          Length = 199752

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 479    ctggatttactgtcatgactt 499
              |||||||||||||||||||||
Sbjct: 177469 ctggatttactgtcatgactt 177449
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>gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, complete sequence
          Length = 180451

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   cagcaatttctctacatttg 455
             ||||||||||||||||||||
Sbjct: 85211 cagcaatttctctacatttg 85230
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>gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, complete sequence
          Length = 227044

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  cacattgttgctatgaatct 345
            ||||||||||||||||||||
Sbjct: 6013 cacattgttgctatgaatct 5994
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>gb|AC157933.4| Mus musculus chromosome 5, clone RP24-189N4, complete sequence
          Length = 185286

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    cacattgttgctatgaatct 345
              ||||||||||||||||||||
Sbjct: 118261 cacattgttgctatgaatct 118242
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>gb|AC138741.7| Mus musculus chromosome 1, clone RP24-260D21, complete sequence
          Length = 161846

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   ttacaatgtgggctcaggat 80
            ||||||||||||||||||||
Sbjct: 8190 ttacaatgtgggctcaggat 8209
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>gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chromosome 2, complete
             sequence
          Length = 139973

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 67180 taaaacagacatccattgaaaaag 67203
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>gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromosome 2, complete
             sequence
          Length = 211457

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 59224 taaaacagacatccattgaaaaag 59201
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>gb|AC182469.3| Pan troglodytes BAC clone CH251-496G17 from chromosome 4, complete
              sequence
          Length = 191618

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 194    taaaagagacatccattgaaaaag 217
              ||||| ||||||||||||||||||
Sbjct: 118875 taaaatagacatccattgaaaaag 118852
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>gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromosome 2, complete
              sequence
          Length = 179528

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    taaaagagacatccattgaaaaag 217
              ||||| ||||||||||||||||||
Sbjct: 144765 taaaacagacatccattgaaaaag 144788
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>gb|AC183918.1| Homo sapiens BAC clone RP11-170N9 from chromosome unknown, complete
              sequence
          Length = 151064

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    taaaagagacatccattgaaaaag 217
              ||||| ||||||||||||||||||
Sbjct: 127283 taaaatagacatccattgaaaaag 127306
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>gb|AC183532.3| Pan troglodytes BAC clone CH251-569N9 from chromosome 2, complete
              sequence
          Length = 192494

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 194    taaaagagacatccattgaaaaag 217
              ||||| ||||||||||||||||||
Sbjct: 156790 taaaacagacatccattgaaaaag 156767
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>gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete sequence
          Length = 155655

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 55251 taaaatagacatccattgaaaaag 55274
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>gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complete sequence
          Length = 155813

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    taaaagagacatccattgaaaaag 217
              ||||| ||||||||||||||||||
Sbjct: 139980 taaaatagacatccattgaaaaag 140003
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>emb|CR388042.8| Zebrafish DNA sequence from clone CH211-254C12 in linkage group 15,
             complete sequence
          Length = 158539

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 70386 ccattgaaaaagaaggattg 70367
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>emb|BX664743.23| Zebrafish DNA sequence from clone DKEY-11D20 in linkage group 22,
              complete sequence
          Length = 180012

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ccattgaaaaagaaggattg 225
              ||||||||||||||||||||
Sbjct: 154935 ccattgaaaaagaaggattg 154916
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>emb|AJ297901.1|ZMA297901 Zea mays mRNA for basal layer antifungal peptide (bap-1a gene)
          Length = 563

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 taaaagatagatcatgcatt 430
           ||||||||||||||||||||
Sbjct: 523 taaaagatagatcatgcatt 504
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>gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, complete sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    tgacttagaagggattgaaa 395
              ||||||||||||||||||||
Sbjct: 120737 tgacttagaagggattgaaa 120756
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>gb|AC117623.7| Mus musculus chromosome 1, clone RP23-114L12, complete sequence
          Length = 211821

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ttacaatgtgggctcaggat 80
             ||||||||||||||||||||
Sbjct: 53384 ttacaatgtgggctcaggat 53365
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>emb|Z97054.1|HS339A18 Human DNA sequence from clone RP3-339A18 on chromosome Xp11.1-11.4
             Contains the 5' end of the SMC1L1 gene for SMC1 structural
             maintenance of chromosomes 1-like 1 (yeast), a novel
             RIB43A domain containing protein (FLJ32783), the HADH2
             gene for hydroxyacyl-Coenzyme A dehydrogenase type II, a
             novel pseudogene (FLJ20516), the 3' end of the gene for
             upstream regulatory element binding protein 1 (UREB1), a
             novel gene and three CpG islands, complete sequence
          Length = 132805

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   tgctgtccatcctggtatag 318
             ||||||||||||||||||||
Sbjct: 44630 tgctgtccatcctggtatag 44611
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>gb|AC138772.4| Homo sapiens BAC clone RP11-1345A16 from UL, complete sequence
          Length = 213227

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    taaaagagacatccattgaaaaag 217
              ||||| ||||||||||||||||||
Sbjct: 178298 taaaatagacatccattgaaaaag 178321
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>gb|AC145212.1| Homo sapiens BAC clone RP11-1368F8 from UL, complete sequence
          Length = 191469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 36003 taaaatagacatccattgaaaaag 35980
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>emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12 on chromosome Xq13.1-21.2
              Contains the 5' end of the ITM2A gene for integral membrane
              protein 2A, complete sequence
          Length = 135090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    gatcaatgtaacagaaaatt 161
              ||||||||||||||||||||
Sbjct: 118612 gatcaatgtaacagaaaatt 118631
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>emb|BX248243.23| Zebrafish DNA sequence from clone CH211-225L7 in linkage group 7,
             complete sequence
          Length = 161572

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 12868 ccattgaaaaagaaggattg 12849
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>emb|CR376846.9| Zebrafish DNA sequence from clone CH211-240P12 in linkage group 1,
             complete sequence
          Length = 145408

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 68782 ccattgaaaaagaaggattg 68763
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>emb|BX005225.20| Zebrafish DNA sequence from clone DKEY-34L15 in linkage group 14,
             complete sequence
          Length = 206042

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 79571 ccattgaaaaagaaggattg 79552
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>emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chromosome 21, complete
             sequence
          Length = 158069

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 93893 taaaatagacatccattgaaaaag 93916
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>emb|CR589946.2| Human DNA sequence from clone WI2-679O21 on chromosome 1, complete
             sequence
          Length = 16121

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 13986 taaaatagacatccattgaaaaag 14009
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>emb|CR381535.11| Human DNA sequence from clone bP-2154M18 on chromosome 21, complete
            sequence
          Length = 152296

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  taaaagagacatccattgaaaaag 217
            ||||| ||||||||||||||||||
Sbjct: 6991 taaaatagacatccattgaaaaag 6968
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>gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complete sequence
          Length = 129203

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   caatttctctacatttgcat 458
             ||||||||||||||||||||
Sbjct: 44880 caatttctctacatttgcat 44861
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>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence
          Length = 174399

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 92124 taaaatagacatccattgaaaaag 92147
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>gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, complete sequence
          Length = 149059

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   gctgacttagaagggattga 393
             ||||||||||||||||||||
Sbjct: 51732 gctgacttagaagggattga 51713
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>ref|XM_687203.1| PREDICTED: Danio rerio similar to LReO_3 (LOC563839), mRNA
          Length = 4491

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ccattgaaaaagaaggattg 225
            ||||||||||||||||||||
Sbjct: 4154 ccattgaaaaagaaggattg 4173
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>ref|XM_689481.1| PREDICTED: Danio rerio similar to LReO_3 (LOC566211), mRNA
          Length = 4563

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ccattgaaaaagaaggattg 225
            ||||||||||||||||||||
Sbjct: 4154 ccattgaaaaagaaggattg 4173
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>ref|XM_682830.1| PREDICTED: Danio rerio similar to LReO_3 (LOC559487), mRNA
          Length = 5376

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ccattgaaaaagaaggattg 225
            ||||||||||||||||||||
Sbjct: 4154 ccattgaaaaagaaggattg 4173
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>ref|XM_685851.1| PREDICTED: Danio rerio similar to LReO_3 (LOC562472), mRNA
          Length = 4491

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ccattgaaaaagaaggattg 225
            ||||||||||||||||||||
Sbjct: 4154 ccattgaaaaagaaggattg 4173
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>emb|CR381670.5| Human DNA sequence from clone bP-2189O9 on chromosome 21, complete
             sequence
          Length = 129889

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 94274 taaaatagacatccattgaaaaag 94251
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>emb|BX784031.5| Zebrafish DNA sequence from clone DKEY-174E15 in linkage group 21,
             complete sequence
          Length = 231014

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 55671 ccattgaaaaagaaggattg 55690
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>gb|AC138776.2| Homo sapiens BAC clone RP11-1277N13 from UL, complete sequence
          Length = 202926

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 86165 taaaatagacatccattgaaaaag 86142
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>gb|AC138777.3| Homo sapiens BAC clone RP11-1220P14 from 2, complete sequence
          Length = 220281

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  taaaagagacatccattgaaaaag 217
            ||||| ||||||||||||||||||
Sbjct: 6321 taaaatagacatccattgaaaaag 6298
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>gb|AC097374.3| Homo sapiens BAC clone RP11-71B7 from 2, complete sequence
          Length = 127075

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 68287 taaaacagacatccattgaaaaag 68310
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>emb|BX855590.3| Zebrafish DNA sequence from clone CH211-245N8, complete sequence
          Length = 179373

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 39917 ccattgaaaaagaaggattg 39898
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>gb|AC148028.2| Homo sapiens chromosome UNKNOWN clone RP11-238G20, complete sequence
          Length = 172857

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 30080 taaaatagacatccattgaaaaag 30057
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>emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, complete sequence
          Length = 170736

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ccattgaaaaagaaggattg 225
              ||||||||||||||||||||
Sbjct: 106228 ccattgaaaaagaaggattg 106209
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>emb|BX088583.12| Zebrafish DNA sequence from clone CH211-211K8 in linkage group 22,
             complete sequence
          Length = 202012

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 19516 ccattgaaaaagaaggattg 19535
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>emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on chromosome 22, complete
             sequence
          Length = 166566

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 83684 taaaatagacatccattgaaaaag 83661
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>emb|AL354822.8| Human DNA sequence from clone RP11-474C22 on chromosome 22, complete
             sequence
          Length = 161147

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 21236 taaaatagacatccattgaaaaag 21213
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>emb|BX572084.5| Human DNA sequence from clone RP11-423O2 on chromosome 1, complete
             sequence
          Length = 186739

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   taaaagagacatccattgaaaaag 217
             ||||| ||||||||||||||||||
Sbjct: 16203 taaaatagacatccattgaaaaag 16180
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>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence
          Length = 182571

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   aaaattgctagaattctcca 175
             ||||||||||||||||||||
Sbjct: 53336 aaaattgctagaattctcca 53355
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>emb|CR936401.6| Zebrafish DNA sequence from clone CH73-348K23 in linkage group 22,
              complete sequence
          Length = 119387

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ccattgaaaaagaaggattg 225
              ||||||||||||||||||||
Sbjct: 113729 ccattgaaaaagaaggattg 113710
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>emb|AL355793.6| Human DNA sequence from clone RP4-694M10 on chromosome 1, complete
            sequence
          Length = 101333

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  taaaagagacatccattgaaaaag 217
            ||||| ||||||||||||||||||
Sbjct: 4785 taaaatagacatccattgaaaaag 4762
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>emb|BX004987.9| Human DNA sequence from clone RP11-435B5 on chromosome 1, complete
            sequence
          Length = 201709

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  taaaagagacatccattgaaaaag 217
            ||||| ||||||||||||||||||
Sbjct: 6150 taaaatagacatccattgaaaaag 6127
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>emb|CR392001.6| Zebrafish DNA sequence from clone DKEY-70B24 in linkage group 14,
             complete sequence
          Length = 182769

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ccattgaaaaagaaggattg 225
             ||||||||||||||||||||
Sbjct: 13206 ccattgaaaaagaaggattg 13187
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    aaaattgctagaattctcca 175
              ||||||||||||||||||||
Sbjct: 896422 aaaattgctagaattctcca 896441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,967,053
Number of Sequences: 3902068
Number of extensions: 4967053
Number of successful extensions: 91255
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91149
Number of HSP's gapped (non-prelim): 106
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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