| Clone Name | rbags8j09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_640568.1| Dictyostelium discoideum hypothetical protein (DDB0202851), partial mRNA Length = 1593 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ttaaaaccaaaaaatctgaac 36 ||||||||||||||||||||| Sbjct: 641 ttaaaaccaaaaaatctgaac 661
>ref|XM_633185.1| Dictyostelium discoideum hypothetical protein (DDB0191423), partial mRNA Length = 2100 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaccaaataagaaactaatg 88 |||||||||||||||||||| Sbjct: 1186 aaccaaataagaaactaatg 1167
>gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, complete sequence Length = 139851 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaaatctgaaccctaaggc 44 |||||||||||||||||||| Sbjct: 78590 aaaaatctgaaccctaaggc 78571
>gb|AY191016.1| Dictyostelium discoideum autophagy protein 9 (apg9) gene, partial cds Length = 2203 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaccaaataagaaactaatg 88 |||||||||||||||||||| Sbjct: 1325 aaccaaataagaaactaatg 1306
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 taaaaccaaaaaatctgaac 36 |||||||||||||||||||| Sbjct: 1898228 taaaaccaaaaaatctgaac 1898209
>dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, section 50/105 Length = 340000 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaaatctgaaccctaaggc 44 |||||||||||||||||||| Sbjct: 268144 aaaaatctgaaccctaaggc 268125
>dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-355D16, complete sequence Length = 159121 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaaatctgaaccctaaggc 44 |||||||||||||||||||| Sbjct: 88125 aaaaatctgaaccctaaggc 88106
>dbj|AP000195.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B355D16-T1073, segment 1/8, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaaaatctgaaccctaaggc 44 |||||||||||||||||||| Sbjct: 70997 aaaaatctgaaccctaaggc 71016
>dbj|AP000091.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, B335D16-P10G11 region, segment 1/7 Length = 100000 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaaaatctgaaccctaaggc 44 |||||||||||||||||||| Sbjct: 70997 aaaaatctgaaccctaaggc 71016
>ref|NM_009911.2| Mus musculus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA Length = 1877 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1682 gatggcacttaaaaccaaa 1700
>gb|BC031665.1| Mus musculus chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone MGC:36266 IMAGE:3592479), complete cds Length = 1817 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1639 gatggcacttaaaaccaaa 1657
>gb|AC123507.4| Rattus norvegicus 11 BAC CH230-18C5 (Children's Hospital Oakland Research Institute) complete sequence Length = 166073 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 6 ctgatggcacttaaaaccaaaaa 28 |||| |||||||||||||||||| Sbjct: 4075 ctgaaggcacttaaaaccaaaaa 4097
>gb|AC161170.7| Mus musculus chromosome 1, clone RP23-307G23, complete sequence Length = 222820 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 27921 gatggcacttaaaaccaaa 27939
>gb|AC004547.1| Homo sapiens PAC clone RP5-982C16 from 7, complete sequence Length = 130632 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 aaaaccaaaaaatctgaac 36 ||||||||||||||||||| Sbjct: 101874 aaaaccaaaaaatctgaac 101856
>emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on chromosome 1 Contains a novel gene, complete sequence Length = 143508 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaccaaataagaaactaat 87 ||||||||||||||||||| Sbjct: 44689 aaccaaataagaaactaat 44671
>gb|BC098322.1| Mus musculus chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone MGC:102523 IMAGE:2864967), complete cds Length = 1802 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1631 gatggcacttaaaaccaaa 1649
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete sequence Length = 94029 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 taaaaccaaaaaatctgaa 35 ||||||||||||||||||| Sbjct: 39763 taaaaccaaaaaatctgaa 39745
>dbj|AK088663.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430023B02 product:chemokine (C-X-C) receptor 4 / CXCR-4, full insert sequence Length = 513 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 360 gatggcacttaaaaccaaa 378
>gb|AF129078.2|AF129078 Homo sapiens chromosome 21 clone PAC B22238 map 21q22.1, complete sequence Length = 78338 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 taaaaccaaaaaatctgaa 35 ||||||||||||||||||| Sbjct: 25942 taaaaccaaaaaatctgaa 25960
>emb|AL163247.2|HS21C047 Homo sapiens chromosome 21 segment HS21C047 Length = 340000 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 taaaaccaaaaaatctgaa 35 ||||||||||||||||||| Sbjct: 288557 taaaaccaaaaaatctgaa 288575
>gb|BC089804.1| Rattus norvegicus chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone MGC:108696 IMAGE:7380432), complete cds Length = 1714 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1550 gatggcacttaaaaccaaa 1568
>gb|AC147556.3| Mus musculus BAC clone RP23-480N14 from 1, complete sequence Length = 175641 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 59408 gatggcacttaaaaccaaa 59426
>ref|NM_022205.3| Rattus norvegicus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA Length = 1726 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1570 gatggcacttaaaaccaaa 1588
>dbj|D87747.1| Mus musculus mRNA for murine CXCR-4, complete cds Length = 1877 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1682 gatggcacttaaaaccaaa 1700
>dbj|AB000803.1| Mouse mRNA for murine CXCR-4, complete cds Length = 1809 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gatggcacttaaaaccaaa 26 ||||||||||||||||||| Sbjct: 1640 gatggcacttaaaaccaaa 1658 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,050,585 Number of Sequences: 3902068 Number of extensions: 1050585 Number of successful extensions: 72088 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72038 Number of HSP's gapped (non-prelim): 50 length of query: 96 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 75 effective length of database: 17,151,101,840 effective search space: 1286332638000 effective search space used: 1286332638000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)