ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_640568.1| Dictyostelium discoideum hypothetical protein (... 42 0.27
2ref|XM_633185.1| Dictyostelium discoideum hypothetical protein (... 40 1.1
3gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, compl... 40 1.1
4gb|AY191016.1| Dictyostelium discoideum autophagy protein 9 (apg... 40 1.1
5dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 1.1
6dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 1.1
7dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 1.1
8dbj|AP000195.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 1.1
9dbj|AP000091.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 40 1.1
10ref|NM_009911.2| Mus musculus chemokine (C-X-C motif) receptor 4... 38 4.2
11gb|BC031665.1| Mus musculus chemokine (C-X-C motif) receptor 4, ... 38 4.2
12gb|AC123507.4| Rattus norvegicus 11 BAC CH230-18C5 (Children's H... 38 4.2
13gb|AC161170.7| Mus musculus chromosome 1, clone RP23-307G23, com... 38 4.2
14gb|AC004547.1| Homo sapiens PAC clone RP5-982C16 from 7, complet... 38 4.2
15emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on ch... 38 4.2
16gb|BC098322.1| Mus musculus chemokine (C-X-C motif) receptor 4, ... 38 4.2
17gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map... 38 4.2
18dbj|AK088663.1| Mus musculus 2 days neonate thymus thymic cells ... 38 4.2
19gb|AF129078.2|AF129078 Homo sapiens chromosome 21 clone PAC B222... 38 4.2
20emb|AL163247.2|HS21C047 Homo sapiens chromosome 21 segment HS21C047 38 4.2
21gb|BC089804.1| Rattus norvegicus chemokine (C-X-C motif) recepto... 38 4.2
22gb|AC147556.3| Mus musculus BAC clone RP23-480N14 from 1, comple... 38 4.2
23ref|NM_022205.3| Rattus norvegicus chemokine (C-X-C motif) recep... 38 4.2
24dbj|D87747.1| Mus musculus mRNA for murine CXCR-4, complete cds 38 4.2
25dbj|AB000803.1| Mouse mRNA for murine CXCR-4, complete cds 38 4.2

>ref|XM_640568.1| Dictyostelium discoideum hypothetical protein (DDB0202851), partial
           mRNA
          Length = 1593

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 16  ttaaaaccaaaaaatctgaac 36
           |||||||||||||||||||||
Sbjct: 641 ttaaaaccaaaaaatctgaac 661



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>ref|XM_633185.1| Dictyostelium discoideum hypothetical protein (DDB0191423), partial
            mRNA
          Length = 2100

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   aaccaaataagaaactaatg 88
            ||||||||||||||||||||
Sbjct: 1186 aaccaaataagaaactaatg 1167



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>gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, complete sequence
          Length = 139851

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaatctgaaccctaaggc 44
             ||||||||||||||||||||
Sbjct: 78590 aaaaatctgaaccctaaggc 78571



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>gb|AY191016.1| Dictyostelium discoideum autophagy protein 9 (apg9) gene, partial cds
          Length = 2203

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   aaccaaataagaaactaatg 88
            ||||||||||||||||||||
Sbjct: 1325 aaccaaataagaaactaatg 1306



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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 17      taaaaccaaaaaatctgaac 36
               ||||||||||||||||||||
Sbjct: 1898228 taaaaccaaaaaatctgaac 1898209



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>dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, section 50/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aaaaatctgaaccctaaggc 44
              ||||||||||||||||||||
Sbjct: 268144 aaaaatctgaaccctaaggc 268125



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>dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-355D16, complete
             sequence
          Length = 159121

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaatctgaaccctaaggc 44
             ||||||||||||||||||||
Sbjct: 88125 aaaaatctgaaccctaaggc 88106



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>dbj|AP000195.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B355D16-T1073, segment 1/8, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aaaaatctgaaccctaaggc 44
             ||||||||||||||||||||
Sbjct: 70997 aaaaatctgaaccctaaggc 71016



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>dbj|AP000091.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             B335D16-P10G11 region, segment 1/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aaaaatctgaaccctaaggc 44
             ||||||||||||||||||||
Sbjct: 70997 aaaaatctgaaccctaaggc 71016



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>ref|NM_009911.2| Mus musculus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA
          Length = 1877

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1682 gatggcacttaaaaccaaa 1700



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>gb|BC031665.1| Mus musculus chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone
            MGC:36266 IMAGE:3592479), complete cds
          Length = 1817

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1639 gatggcacttaaaaccaaa 1657



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>gb|AC123507.4| Rattus norvegicus 11 BAC CH230-18C5 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 166073

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 6    ctgatggcacttaaaaccaaaaa 28
            |||| ||||||||||||||||||
Sbjct: 4075 ctgaaggcacttaaaaccaaaaa 4097



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>gb|AC161170.7| Mus musculus chromosome 1, clone RP23-307G23, complete sequence
          Length = 222820

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gatggcacttaaaaccaaa 26
             |||||||||||||||||||
Sbjct: 27921 gatggcacttaaaaccaaa 27939



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>gb|AC004547.1| Homo sapiens PAC clone RP5-982C16 from 7, complete sequence
          Length = 130632

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     aaaaccaaaaaatctgaac 36
              |||||||||||||||||||
Sbjct: 101874 aaaaccaaaaaatctgaac 101856



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>emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 143508

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    aaccaaataagaaactaat 87
             |||||||||||||||||||
Sbjct: 44689 aaccaaataagaaactaat 44671



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>gb|BC098322.1| Mus musculus chemokine (C-X-C motif) receptor 4, mRNA (cDNA clone
            MGC:102523 IMAGE:2864967), complete cds
          Length = 1802

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1631 gatggcacttaaaaccaaa 1649



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>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
             sequence
          Length = 94029

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    taaaaccaaaaaatctgaa 35
             |||||||||||||||||||
Sbjct: 39763 taaaaccaaaaaatctgaa 39745



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>dbj|AK088663.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430023B02
           product:chemokine (C-X-C) receptor 4 / CXCR-4, full
           insert sequence
          Length = 513

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   gatggcacttaaaaccaaa 26
           |||||||||||||||||||
Sbjct: 360 gatggcacttaaaaccaaa 378



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>gb|AF129078.2|AF129078 Homo sapiens chromosome 21 clone PAC B22238 map 21q22.1, complete
             sequence
          Length = 78338

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    taaaaccaaaaaatctgaa 35
             |||||||||||||||||||
Sbjct: 25942 taaaaccaaaaaatctgaa 25960



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>emb|AL163247.2|HS21C047 Homo sapiens chromosome 21 segment HS21C047
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     taaaaccaaaaaatctgaa 35
              |||||||||||||||||||
Sbjct: 288557 taaaaccaaaaaatctgaa 288575



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>gb|BC089804.1| Rattus norvegicus chemokine (C-X-C motif) receptor 4, mRNA (cDNA
            clone MGC:108696 IMAGE:7380432), complete cds
          Length = 1714

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1550 gatggcacttaaaaccaaa 1568



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>gb|AC147556.3| Mus musculus BAC clone RP23-480N14 from 1, complete sequence
          Length = 175641

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gatggcacttaaaaccaaa 26
             |||||||||||||||||||
Sbjct: 59408 gatggcacttaaaaccaaa 59426



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>ref|NM_022205.3| Rattus norvegicus chemokine (C-X-C motif) receptor 4 (Cxcr4), mRNA
          Length = 1726

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1570 gatggcacttaaaaccaaa 1588



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>dbj|D87747.1| Mus musculus mRNA for murine CXCR-4, complete cds
          Length = 1877

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1682 gatggcacttaaaaccaaa 1700



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>dbj|AB000803.1| Mouse mRNA for murine CXCR-4, complete cds
          Length = 1809

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gatggcacttaaaaccaaa 26
            |||||||||||||||||||
Sbjct: 1640 gatggcacttaaaaccaaa 1658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,050,585
Number of Sequences: 3902068
Number of extensions: 1050585
Number of successful extensions: 72088
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72038
Number of HSP's gapped (non-prelim): 50
length of query: 96
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 75
effective length of database: 17,151,101,840
effective search space: 1286332638000
effective search space used: 1286332638000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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