ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8j04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469973.1| Oryza sativa (japonica cultivar-group), mRNA 281 1e-72
2dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
3dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
4gb|AY104601.1| Zea mays PCO085879 mRNA sequence 232 1e-57
5gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence 208 2e-50
6gb|BT016441.1| Zea mays clone Contig274 mRNA sequence 206 6e-50
7gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence 200 4e-48
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 184 2e-43
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
10gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 184 2e-43
11gb|AY389644.1| Hyacinthus orientalis vacuolar protein sorting-as... 78 4e-11
12ref|NM_106235.3| Arabidopsis thaliana unknown protein AT1G75850 ... 60 9e-06
13emb|CR936327.2| Medicago truncatula chromosome 5 clone mte1-68g1... 52 0.002
14emb|AJ719889.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.53
15gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete seq... 44 0.53
16gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosom... 44 0.53
17ref|NM_114990.2| Arabidopsis thaliana unknown protein AT3G51310 ... 42 2.1
18gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 2.1
19emb|BX825234.1|CNS0A66M Arabidopsis thaliana Full-length cDNA Co... 42 2.1
20gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete s... 42 2.1
21dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.1
22dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.1
23gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, comp... 40 8.3
24gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
25gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
26ref|XM_581035.2| PREDICTED: Bos taurus similar to CG15021-PA, tr... 40 8.3
27gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, com... 40 8.3
28gb|AC102532.12| Mus musculus chromosome 12, clone RP23-49D23, co... 40 8.3
29gb|U39651.1| Caenorhabditis elegans cosmid ZK470, complete sequence 40 8.3
30gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome... 40 8.3
31ref|XM_445920.1| Candida glabrata CBS138, CAGL0E05324g partial mRNA 40 8.3
32gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosom... 40 8.3
33gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, comple... 40 8.3
34gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, co... 40 8.3
35gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, comp... 40 8.3
36emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 8.3
37emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 ... 40 8.3
38dbj|AK139683.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 8.3
39gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, com... 40 8.3
40ref|NM_076305.4| Caenorhabditis elegans NCK (Non-Catalytic regio... 40 8.3
41ref|NM_076306.3| Caenorhabditis elegans NCK (Non-Catalytic regio... 40 8.3
42dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
44gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana... 40 8.3
45dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
46gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, com... 40 8.3
47ref|NR_002886.1| Mus musculus tubulin, alpha 2 pseudogene (LOC62... 40 8.3
48emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 ... 40 8.3 
>ref|XM_469973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2851

 Score =  281 bits (142), Expect = 1e-72
 Identities = 253/290 (87%)
 Strand = Plus / Minus

                                                                        
Query: 314  ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 373
            |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2420 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2361

                                                                        
Query: 374  tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 433
             |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 2360 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2301

                                                                        
Query: 434  cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 493
            |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 2300 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2241

                                                                        
Query: 494  tcctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatcc 553
            ||||||||| |||||||||| |||||||||||||||||| ||||||||   |||||||||
Sbjct: 2240 tcctttctcgaagaagtacaaatacttgttcaaaatttcgataaatagcgcgacagatcc 2181

                                                              
Query: 554  gctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 603
            ||| |||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 2180 gctacttccccttgttacattagccatctgttgagcggcatttgcaattc 2131



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 70/81 (86%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    atatacaacaatggcactccggtacacaagtatc-ctgtacagacctgagcttcccaaag 60
            |||||||||||||  |||| |||||||||||  | ||||||||| ||||||||||| |||
Sbjct: 2706 atatacaacaatgatactctggtacacaagttgcgctgtacagatctgagcttccc-aag 2648

                                 
Query: 61   ngtacagcttattaccacctg 81
             ||| |||||||| |||||||
Sbjct: 2647 ggtaaagcttattgccacctg 2627
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>dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P21, full
            insert sequence
          Length = 2931

 Score =  281 bits (142), Expect = 1e-72
 Identities = 253/290 (87%)
 Strand = Plus / Minus

                                                                        
Query: 314  ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 373
            |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2512 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2453

                                                                        
Query: 374  tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 433
             |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 2452 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2393

                                                                        
Query: 434  cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 493
            |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 2392 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2333

                                                                        
Query: 494  tcctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatcc 553
            ||||||||| |||||||||| |||||||||||||||||| ||||||||   |||||||||
Sbjct: 2332 tcctttctcgaagaagtacaaatacttgttcaaaatttcgataaatagcgcgacagatcc 2273

                                                              
Query: 554  gctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 603
            ||| |||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 2272 gctacttccccttgttacattagccatctgttgagcggcatttgcaattc 2223



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 70/81 (86%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    atatacaacaatggcactccggtacacaagtatc-ctgtacagacctgagcttcccaaag 60
            |||||||||||||  |||| |||||||||||  | ||||||||| ||||||||||| |||
Sbjct: 2798 atatacaacaatgatactctggtacacaagttgcgctgtacagatctgagcttccc-aag 2740

                                 
Query: 61   ngtacagcttattaccacctg 81
             ||| |||||||| |||||||
Sbjct: 2739 ggtaaagcttattgccacctg 2719
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>dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full
            insert sequence
          Length = 3011

 Score =  281 bits (142), Expect = 1e-72
 Identities = 253/290 (87%)
 Strand = Plus / Minus

                                                                        
Query: 314  ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 373
            |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2580 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2521

                                                                        
Query: 374  tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 433
             |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 2520 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2461

                                                                        
Query: 434  cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 493
            |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 2460 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2401

                                                                        
Query: 494  tcctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatcc 553
            ||||||||| |||||||||| |||||||||||||||||| ||||||||   |||||||||
Sbjct: 2400 tcctttctcgaagaagtacaaatacttgttcaaaatttcgataaatagcgcgacagatcc 2341

                                                              
Query: 554  gctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 603
            ||| |||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct: 2340 gctacttccccttgttacattagccatctgttgagcggcatttgcaattc 2291



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 70/81 (86%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    atatacaacaatggcactccggtacacaagtatc-ctgtacagacctgagcttcccaaag 60
            |||||||||||||  |||| |||||||||||  | ||||||||| ||||||||||| |||
Sbjct: 2866 atatacaacaatgatactctggtacacaagttgcgctgtacagatctgagcttccc-aag 2808

                                 
Query: 61   ngtacagcttattaccacctg 81
             ||| |||||||| |||||||
Sbjct: 2807 ggtaaagcttattgccacctg 2787
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>gb|AY104601.1| Zea mays PCO085879 mRNA sequence
          Length = 1686

 Score =  232 bits (117), Expect = 1e-57
 Identities = 246/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 315  tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 374
            |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| 
Sbjct: 1155 tttatctgttcatatttttcgcctatgctcccacctttctgcttctgaaattcaatgtac 1096

                                                                        
Query: 375  cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 434
            || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 1095 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 1036

                                                                        
Query: 435  ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 494
            ||||| || || |||| ||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 1035 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 976

                                                                        
Query: 495  cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 554
            |||||||||||||||||||  ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 975  cctttctcaaagaagtacaagtacttgttcaaaatttcaataaatagggttacagatcca 916

                                                             
Query: 555  ctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 603
            ||||| ||| |||   || ||||||| ||||||||||||||||| ||||
Sbjct: 915  ctgctcccccttgtagcactagccatctgttgagcagcatttgcgattc 867



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                      
Query: 25   acacaagta-tcctgtacagacctgagcttcccaaagngtacagcttattaccacctg 81
            ||||||||| ||||||||||||||| ||| |||||||   |||||||||| |||||||
Sbjct: 1421 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctg 1364
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>gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence
          Length = 2855

 Score =  208 bits (105), Expect = 2e-50
 Identities = 243/289 (84%)
 Strand = Plus / Minus

                                                                        
Query: 315  tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 374
            ||||| |||||||| ||||| |||||  ||||||||||||||||||| ||||| ||||| 
Sbjct: 2482 tttatttgttcatatttttcgcctatagttccacctttctgcttctgaaattcaatgtac 2423

                                                                        
Query: 375  cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 434
            || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 2422 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 2363

                                                                        
Query: 435  ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 494
            ||||| || || |||| ||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 2362 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 2303

                                                                        
Query: 495  cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 554
            |||||||||||||||||||  ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 2302 cctttctcaaagaagtacaagtacttgttcaaaatttcaataaatagggttacagatcca 2243

                                                             
Query: 555  ctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 603
            ||||| ||| |||   |  ||||||| ||||||||||||||||| ||||
Sbjct: 2242 ctgctcccccttgtagcgctagccatctgttgagcagcatttgcgattc 2194



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                      
Query: 25   acacaagta-tcctgtacagacctgagcttcccaaagngtacagcttattaccacctg 81
            ||||||||| ||||||||||||||| |||  ||||||   |||||||||| |||||||
Sbjct: 2747 acacaagtaatcctgtacagacctgtgctcaccaaagg--acagcttattgccacctg 2692
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>gb|BT016441.1| Zea mays clone Contig274 mRNA sequence
          Length = 1532

 Score =  206 bits (104), Expect = 6e-50
 Identities = 239/284 (84%)
 Strand = Plus / Minus

                                                                        
Query: 315  tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 374
            ||||| |||||||| ||||| |||||  ||||||||||||||||||| ||||| ||||| 
Sbjct: 1165 tttatttgttcatatttttcgcctatagttccacctttctgcttctgaaattcaatgtac 1106

                                                                        
Query: 375  cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 434
            || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 1105 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 1046

                                                                        
Query: 435  ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 494
            ||||| || || |||| ||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 1045 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 986

                                                                        
Query: 495  cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 554
            |||||||||||||||||||  ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 985  cctttctcaaagaagtacaagtacttgttcaaaatttcaataaatagggttacagatcca 926

                                                        
Query: 555  ctgcttccctttgatacattagccatttgttgagcagcatttgc 598
            ||||| ||| |||   |  ||||||| |||||||||||||||||
Sbjct: 925  ctgctcccccttgtagcgctagccatctgttgagcagcatttgc 882



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                      
Query: 25   acacaagta-tcctgtacagacctgagcttcccaaagngtacagcttattaccacctg 81
            ||||||||| ||||||||||||||| |||  ||||||   |||||||||| |||||||
Sbjct: 1430 acacaagtaatcctgtacagacctgtgctcaccaaagg--acagcttattgccacctg 1375
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>gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence
          Length = 1093

 Score =  200 bits (101), Expect = 4e-48
 Identities = 242/289 (83%)
 Strand = Plus / Minus

                                                                       
Query: 315 tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 374
           |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| 
Sbjct: 717 tttatctgttcatatttttcgcctatgctcccacctttctgcttctgaaattcaatgtac 658

                                                                       
Query: 375 cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 434
           || | |||||| | |||||| || || | ||||||||||| | ||  | | ||| |||||
Sbjct: 657 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 598

                                                                       
Query: 435 ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 494
           ||||| || || |||| ||| ||||||||||| || || || || ||||| || ||||||
Sbjct: 597 ttctccgttctaatcaattcaatcaaatcttgaatcacggtatttgtgatctgcggaatt 538

                                                                       
Query: 495 cctttctcaaagaagtacagatacttgttcaaaatttcaataaatagaatgacagatccg 554
           |||||||||||||||||||  |||||||||||||| |||||||||||| | || ||||| 
Sbjct: 537 cctttctcaaagaagtacaagtacttgttcaaaatctcaataaatagagttacggatcca 478

                                                            
Query: 555 ctgcttccctttgatacattagccatttgttgagcagcatttgcaattc 603
           ||||||||| |||   || ||||||| ||||||||||||||||| ||||
Sbjct: 477 ctgcttccccttgtagcactagccatctgttgagcagcatttgcgattc 429



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 25  acacaagta-tcctgtacagacctgagcttcccaaagngtacagcttattaccacctg 81
           ||||||||| ||||||||||||||| ||| |||||||   |||||||||| |||||||
Sbjct: 983 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctg 926
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  184 bits (93), Expect = 2e-43
 Identities = 177/205 (86%)
 Strand = Plus / Minus

                                                                            
Query: 314      ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 373
                |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 33128712 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 33128653

                                                                            
Query: 374      tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 433
                 |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 33128652 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 33128593

                                                                            
Query: 434      cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 493
                |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 33128592 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 33128533

                                         
Query: 494      tcctttctcaaagaagtacagatac 518
                ||||||||| |||||||||| ||||
Sbjct: 33128532 tcctttctcgaagaagtacaaatac 33128508



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 516      tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 575
                ||||||||||||||||| ||||||||   |||||||||||| |||||| ||| |||||||
Sbjct: 33128428 tacttgttcaaaatttcgataaatagcgcgacagatccgctacttccccttgttacatta 33128369

                                            
Query: 576      gccatttgttgagcagcatttgcaattc 603
                ||||| |||||||| |||||||||||||
Sbjct: 33128368 gccatctgttgagcggcatttgcaattc 33128341



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 70/81 (86%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                            
Query: 2        atatacaacaatggcactccggtacacaagtatc-ctgtacagacctgagcttcccaaag 60
                |||||||||||||  |||| |||||||||||  | ||||||||| ||||||||||| |||
Sbjct: 33128998 atatacaacaatgatactctggtacacaagttgcgctgtacagatctgagcttccc-aag 33128940

                                     
Query: 61       ngtacagcttattaccacctg 81
                 ||| |||||||| |||||||
Sbjct: 33128939 ggtaaagcttattgccacctg 33128919
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  184 bits (93), Expect = 2e-43
 Identities = 177/205 (86%)
 Strand = Plus / Minus

                                                                            
Query: 314      ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 373
                |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 33219222 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 33219163

                                                                            
Query: 374      tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 433
                 |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 33219162 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 33219103

                                                                            
Query: 434      cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 493
                |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 33219102 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 33219043

                                         
Query: 494      tcctttctcaaagaagtacagatac 518
                ||||||||| |||||||||| ||||
Sbjct: 33219042 tcctttctcgaagaagtacaaatac 33219018



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 516      tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 575
                ||||||||||||||||| ||||||||   |||||||||||| |||||| ||| |||||||
Sbjct: 33218938 tacttgttcaaaatttcgataaatagcgcgacagatccgctacttccccttgttacatta 33218879

                                            
Query: 576      gccatttgttgagcagcatttgcaattc 603
                ||||| |||||||| |||||||||||||
Sbjct: 33218878 gccatctgttgagcggcatttgcaattc 33218851



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 70/81 (86%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                            
Query: 2        atatacaacaatggcactccggtacacaagtatc-ctgtacagacctgagcttcccaaag 60
                |||||||||||||  |||| |||||||||||  | ||||||||| ||||||||||| |||
Sbjct: 33219508 atatacaacaatgatactctggtacacaagttgcgctgtacagatctgagcttccc-aag 33219450

                                     
Query: 61       ngtacagcttattaccacctg 81
                 ||| |||||||| |||||||
Sbjct: 33219449 ggtaaagcttattgccacctg 33219429
to top
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
              sequence
          Length = 144487

 Score =  184 bits (93), Expect = 2e-43
 Identities = 177/205 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 373
              |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 115843 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 115902

                                                                          
Query: 374    tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 433
               |||| ||||||||||||||| || || |  |||||||||| | || || | ||| ||||
Sbjct: 115903 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 115962

                                                                          
Query: 434    cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 493
              |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | ||||||
Sbjct: 115963 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 116022

                                       
Query: 494    tcctttctcaaagaagtacagatac 518
              ||||||||| |||||||||| ||||
Sbjct: 116023 tcctttctcgaagaagtacaaatac 116047



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                          
Query: 516    tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 575
              ||||||||||||||||| ||||||||   |||||||||||| |||||| ||| |||||||
Sbjct: 116127 tacttgttcaaaatttcgataaatagcgcgacagatccgctacttccccttgttacatta 116186

                                          
Query: 576    gccatttgttgagcagcatttgcaattc 603
              ||||| |||||||| |||||||||||||
Sbjct: 116187 gccatctgttgagcggcatttgcaattc 116214



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 70/81 (86%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                          
Query: 2      atatacaacaatggcactccggtacacaagtatc-ctgtacagacctgagcttcccaaag 60
              |||||||||||||  |||| |||||||||||  | ||||||||| ||||||||||| |||
Sbjct: 115557 atatacaacaatgatactctggtacacaagttgcgctgtacagatctgagcttccc-aag 115615

                                   
Query: 61     ngtacagcttattaccacctg 81
               ||| |||||||| |||||||
Sbjct: 115616 ggtaaagcttattgccacctg 115636
to top
>gb|AY389644.1| Hyacinthus orientalis vacuolar protein sorting-associated protein
           mRNA, partial cds
          Length = 709

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                       
Query: 345 ccacctttctgcttctggaattcgatgtatcgtagagtgcttgcaaagaaagcttcggca 404
           ||||| || ||||||||||| | |||||||| ||||||||| ||||||||||| || |||
Sbjct: 205 ccacccttttgcttctggaaatggatgtatcttagagtgctagcaaagaaagcgtctgca 146

                      
Query: 405 gatggatcaga 415
           |||||||||||
Sbjct: 145 gatggatcaga 135



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 493 ttcctttctcaaagaagtacagatacttgttcaaaatttcaa 534
           ||||||| |||||||||||||| ||||| ||| | |||||||
Sbjct: 56  ttcctttttcaaagaagtacaggtacttattcgatatttcaa 15
to top
>ref|NM_106235.3| Arabidopsis thaliana unknown protein AT1G75850 mRNA, complete cds
          Length = 2727

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                        
Query: 480  gtgatttgtggaattcctttctcaaagaagtacagatacttgttcaaaatttcaataaat 539
            ||||| |||||| | ||||||||||||||||| |  ||||||||||| ||||||| ||| 
Sbjct: 2313 gtgatatgtggattccctttctcaaagaagtaaatgtacttgttcaagatttcaacaaac 2254

                                                              
Query: 540  agaatgacagatccgctgcttccctttgatacattagccatttgttgagc 589
            ||  |||| | ||||||||| ||  | | | || ||||||||||||||||
Sbjct: 2253 agcgtgactggtccgctgctacctctggttgcactagccatttgttgagc 2204
to top
>emb|CR936327.2| Medicago truncatula chromosome 5 clone mte1-68g1, COMPLETE SEQUENCE
          Length = 116729

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 516   tacttgttcaaaatttcaataaatagaatgacagatccgctgcttccctttgatacatta 575
             |||||||||||||| ||||| || || || || |||||| |||| ||   || | |||| 
Sbjct: 53823 tacttgttcaaaatctcaatgaagagcattactgatccggtgctacctcgtgctgcattt 53882

                                       
Query: 576   gccatttgttgagcagcatttgcaat 601
             ||||||||||| ||||||||||||||
Sbjct: 53883 gccatttgttgtgcagcatttgcaat 53908
to top
>emb|AJ719889.1| Gallus gallus mRNA for hypothetical protein, clone 7n24
          Length = 1342

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 522  ttcaaaatttcaataaatagaatgac 547
            ||||||| ||||||||||||||||||
Sbjct: 1175 ttcaaaacttcaataaatagaatgac 1150
to top
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence
          Length = 116601

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 569   tacattagccatttgttgagcagcatttgc 598
             |||||| |||||||| ||||||||||||||
Sbjct: 11671 tacattggccatttgctgagcagcatttgc 11642
to top
>gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosome ul, complete
             sequence
          Length = 196838

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 522   ttcaaaatttcaataaatagaatgac 547
             ||||||| ||||||||||||||||||
Sbjct: 47859 ttcaaaacttcaataaatagaatgac 47834
to top
>ref|NM_114990.2| Arabidopsis thaliana unknown protein AT3G51310 mRNA, complete cds
          Length = 2463

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 493  ttcctttctcaaagaagtacagatacttgttca 525
            |||||||||| | |||||| |||||||||||||
Sbjct: 2164 ttcctttctccaggaagtagagatacttgttca 2132
to top
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 150     tcagaaaccacaaactttgca 170
               |||||||||||||||||||||
Sbjct: 2404555 tcagaaaccacaaactttgca 2404535
to top
>emb|BX825234.1|CNS0A66M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL21ZG11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 992

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 493 ttcctttctcaaagaagtacagatacttgttca 525
           |||||||||| | |||||| |||||||||||||
Sbjct: 662 ttcctttctccaggaagtagagatacttgttca 630
to top
>gb|AC153773.3| Loxodonta africana clone VMRC15-519D8, complete sequence
          Length = 86658

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 524   caaaatttcaataaatagaat 544
             |||||||||||||||||||||
Sbjct: 55643 caaaatttcaataaatagaat 55623
to top
>dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-367C21, complete
             sequence
          Length = 161529

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   agcttttatctgttcatactt 331
             |||||||||||||||||||||
Sbjct: 90000 agcttttatctgttcatactt 90020
to top
>dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45A23, TM0318,
              complete sequence
          Length = 117676

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 498    ttctcaaagaagtacagatac 518
              |||||||||||||||||||||
Sbjct: 105435 ttctcaaagaagtacagatac 105415
to top
>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ctgccagccaaaatggaaac 274
              ||||||||||||||||||||
Sbjct: 141737 ctgccagccaaaatggaaac 141756
to top
>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0015A05, complete sequence
          Length = 127330

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   ggcttgctttctctctgccagcca 264
             |||||||| |||||||||||||||
Sbjct: 41020 ggcttgctgtctctctgccagcca 40997
to top
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0077J22, complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 241  ggcttgctttctctctgccagcca 264
            |||||||| |||||||||||||||
Sbjct: 2654 ggcttgctgtctctctgccagcca 2631
to top
>ref|XM_581035.2| PREDICTED: Bos taurus similar to CG15021-PA, transcript variant 1
            (LOC504853), mRNA
          Length = 3422

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 118  agggtggacatgcaccgatttgag 141
            ||||||||||||||| ||||||||
Sbjct: 3290 agggtggacatgcacggatttgag 3313
to top
>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence
          Length = 164107

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    gtaagtaacccaaacattgtagct 115
             ||||||||||||| ||||||||||
Sbjct: 59126 gtaagtaacccaatcattgtagct 59103
to top
>gb|AC102532.12| Mus musculus chromosome 12, clone RP23-49D23, complete sequence
          Length = 170606

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   tgttcaaaatttcaataaat 539
             ||||||||||||||||||||
Sbjct: 43552 tgttcaaaatttcaataaat 43533
to top
>gb|U39651.1| Caenorhabditis elegans cosmid ZK470, complete sequence
          Length = 43695

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   tacttgttcaaaatttcaat 535
             ||||||||||||||||||||
Sbjct: 14714 tacttgttcaaaatttcaat 14695
to top
>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence
          Length = 195082

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   tgcttctctgtcctgatcag 451
             ||||||||||||||||||||
Sbjct: 48280 tgcttctctgtcctgatcag 48261
to top
>ref|XM_445920.1| Candida glabrata CBS138, CAGL0E05324g partial mRNA
          Length = 3855

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 491  aattcctttctcaaagaagt 510
            ||||||||||||||||||||
Sbjct: 1821 aattcctttctcaaagaagt 1802
to top
>gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosome 12, complete
             sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   tgttcaaaatttcaataaat 539
             ||||||||||||||||||||
Sbjct: 55968 tgttcaaaatttcaataaat 55987
to top
>gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, complete sequence
          Length = 209506

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 241    ggcttgctttctctctgccagcca 264
              |||||||||||||| |||||||||
Sbjct: 109543 ggcttgctttctctgtgccagcca 109566
to top
>gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, complete sequence
          Length = 203246

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   acaaactttgcaaacatttt 178
             ||||||||||||||||||||
Sbjct: 65186 acaaactttgcaaacatttt 65167
to top
>gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, complete sequence
          Length = 220713

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    ggcttgctttctctctgccagcca 264
              |||||||||||||| |||||||||
Sbjct: 181248 ggcttgctttctctgtgccagcca 181225
to top
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 491    aattcctttctcaaagaagt 510
              ||||||||||||||||||||
Sbjct: 519260 aattcctttctcaaagaagt 519279
to top
>emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 in linkage group 13,
             complete sequence
          Length = 84641

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tgccctacttgtctcgagtt 306
             ||||||||||||||||||||
Sbjct: 16916 tgccctacttgtctcgagtt 16935
to top
>dbj|AK139683.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
            clone:B020010K11 product:unclassifiable, full insert
            sequence
          Length = 3581

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  ctgccagccaaaatggaaac 274
            ||||||||||||||||||||
Sbjct: 3326 ctgccagccaaaatggaaac 3345
to top
>gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, complete sequence
          Length = 177509

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ctgccagccaaaatggaaac 274
             ||||||||||||||||||||
Sbjct: 85948 ctgccagccaaaatggaaac 85929
to top
>ref|NM_076305.4| Caenorhabditis elegans NCK (Non-Catalytic region of tyrosine Kinase)
            adaptor protein family member (nck-1) (nck-1) mRNA,
            complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 516  tacttgttcaaaatttcaat 535
            ||||||||||||||||||||
Sbjct: 1215 tacttgttcaaaatttcaat 1234
to top
>ref|NM_076306.3| Caenorhabditis elegans NCK (Non-Catalytic region of tyrosine Kinase)
            adaptor protein family member (nck-1) (nck-1) mRNA,
            complete cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 516  tacttgttcaaaatttcaat 535
            ||||||||||||||||||||
Sbjct: 1224 tacttgttcaaaatttcaat 1243
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 241     ggcttgctttctctctgccagcca 264
               |||||||| |||||||||||||||
Sbjct: 2556134 ggcttgctgtctctctgccagcca 2556111
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 152      agaaaccacaaactttgcaaacat 175
                |||| |||||||||||||||||||
Sbjct: 18756877 agaacccacaaactttgcaaacat 18756900
to top
>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 480   gtgatttgtggaattcctttctcaaagaagta 511
             ||||| |||||| | |||||||||||||||||
Sbjct: 27296 gtgatatgtggattccctttctcaaagaagta 27327
to top
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1249E06
          Length = 126534

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 152   agaaaccacaaactttgcaaacat 175
             |||| |||||||||||||||||||
Sbjct: 78394 agaacccacaaactttgcaaacat 78417
to top
>gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, complete sequence
          Length = 225976

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 241    ggcttgctttctctctgccagcca 264
              |||||||||||||| |||||||||
Sbjct: 184568 ggcttgctttctctgtgccagcca 184591
to top
>ref|NR_002886.1| Mus musculus tubulin, alpha 2 pseudogene (LOC621740) on chromosome 18
          Length = 3581

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  ctgccagccaaaatggaaac 274
            ||||||||||||||||||||
Sbjct: 3326 ctgccagccaaaatggaaac 3345
to top
>emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 in linkage group 15,
              complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 531    tcaataaatagaatgacagatccg 554
              |||||| |||||||||||||||||
Sbjct: 127805 tcaatagatagaatgacagatccg 127828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,004,703
Number of Sequences: 3902068
Number of extensions: 6004703
Number of successful extensions: 116525
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116248
Number of HSP's gapped (non-prelim): 263
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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