ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473222.1| Oryza sativa (japonica cultivar-group), predic... 115 2e-22
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
3dbj|AK061536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
4emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 115 2e-22
5dbj|AK102934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
6gb|BT013883.1| Lycopersicon esculentum clone 132864F, mRNA sequence 46 0.12
7gb|AY647432.1| Siniperca chuatsi virus-induced protein 5 mRNA, c... 42 1.8
8gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Canc... 42 1.8
9gb|AC083868.3| Homo sapiens chromosome 7 clone RP11-148L5, compl... 42 1.8
10gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, co... 40 7.3
11gb|AC167971.3| Mus musculus BAC clone RP24-439I22 from chromosom... 40 7.3
12gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete... 40 7.3
13gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complet... 40 7.3
14gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, co... 40 7.3
15emb|CR380952.1| Candida glabrata strain CBS138 chromosome F comp... 40 7.3
16gb|AC021542.8| Homo sapiens chromosome 15, clone RP11-507B12, co... 40 7.3
17dbj|AK018028.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 7.3
18gb|AC155263.2| Mus musculus BAC clone RP23-415I11 from chromosom... 40 7.3 
>ref|XM_473222.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1281

 Score =  115 bits (58), Expect = 2e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 241  cgtttctaatgccgataccaaagatgacgccaggaactgactgttggtagaaagcaaagt 300
            |||||||||| || || ||||| || || ||||||||| |||||||||||||||| ||||
Sbjct: 1126 cgtttctaataccaatgccaaacataactccaggaactaactgttggtagaaagcgaagt 1067

                                                                        
Query: 301  cttcccctgccatgatcttctccccgggcttcacattatccgggccaagcaatcttctgc 360
            |||| || ||||| |||||||| || |||||||| || || || ||||| |||| |||||
Sbjct: 1066 cttcgccagccataatcttctctcccggcttcaccttgtctggaccaagtaatcgtctgc 1007

                                                                        
Query: 361  ccacattctctatgtggcgatgcagcctctcatcattcacgacggcgggatacatcgggt 420
            ||||| | ||||  ||| |||||||  |||||||||| | ||| || |||||||| ||||
Sbjct: 1006 ccacagtttctacatggtgatgcagtttctcatcattaaagacagctggatacattgggt 947

              
Query: 421  ag 422
            ||
Sbjct: 946  ag 945



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                       
Query: 450 cccttgcatctatgcacagctgcctgcccttctactacctccttaagccttttctctagt 509
           ||||||||||| ||||||||||||||||||||||| |||||||| | |||||||| ||| 
Sbjct: 920 cccttgcatctgtgcacagctgcctgcccttctaccacctccttgacccttttctgtaga 861

                                        
Query: 510 cnataaagtccttnantagtaaggctcct 538
           | ||| || |||| | |||| ||||||||
Sbjct: 860 cgatatagaccttcagtagtgaggctcct 832
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  115 bits (58), Expect = 2e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                            
Query: 241      cgtttctaatgccgataccaaagatgacgccaggaactgactgttggtagaaagcaaagt 300
                |||||||||| || || ||||| || || ||||||||| |||||||||||||||| ||||
Sbjct: 26091415 cgtttctaataccaatgccaaacataactccaggaactaactgttggtagaaagcgaagt 26091356

                                                                            
Query: 301      cttcccctgccatgatcttctccccgggcttcacattatccgggccaagcaatcttctgc 360
                |||| || ||||| |||||||| || |||||||| || || || ||||| |||| |||||
Sbjct: 26091355 cttcgccagccataatcttctctcccggcttcaccttgtctggaccaagtaatcgtctgc 26091296

                                                                            
Query: 361      ccacattctctatgtggcgatgcagcctctcatcattcacgacggcgggatacatcgggt 420
                ||||| | ||||  ||| |||||||  |||||||||| | ||| || |||||||| ||||
Sbjct: 26091295 ccacagtttctacatggtgatgcagtttctcatcattaaagacagctggatacattgggt 26091236

                  
Query: 421      ag 422
                ||
Sbjct: 26091235 ag 26091234



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 450      cccttgcatctatgcacagctgcctgcccttctactacct 489
                ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 26091209 cccttgcatctgtgcacagctgcctgcccttctaccacct 26091170
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>dbj|AK061536.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F08, full
            insert sequence
          Length = 1464

 Score =  115 bits (58), Expect = 2e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 241  cgtttctaatgccgataccaaagatgacgccaggaactgactgttggtagaaagcaaagt 300
            |||||||||| || || ||||| || || ||||||||| |||||||||||||||| ||||
Sbjct: 1160 cgtttctaataccaatgccaaacataactccaggaactaactgttggtagaaagcgaagt 1101

                                                                        
Query: 301  cttcccctgccatgatcttctccccgggcttcacattatccgggccaagcaatcttctgc 360
            |||| || ||||| |||||||| || |||||||| || || || ||||| |||| |||||
Sbjct: 1100 cttcgccagccataatcttctctcccggcttcaccttgtctggaccaagtaatcgtctgc 1041

                                                                        
Query: 361  ccacattctctatgtggcgatgcagcctctcatcattcacgacggcgggatacatcgggt 420
            ||||| | ||||  ||| |||||||  |||||||||| | ||| || |||||||| ||||
Sbjct: 1040 ccacagtttctacatggtgatgcagtttctcatcattaaagacagctggatacattgggt 981

              
Query: 421  ag 422
            ||
Sbjct: 980  ag 979



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                       
Query: 450 cccttgcatctatgcacagctgcctgcccttctactacctccttaagccttttctctagt 509
           ||||||||||| ||||||||||||||||||||||| |||||||| | |||||||| ||| 
Sbjct: 954 cccttgcatctgtgcacagctgcctgcccttctaccacctccttgacccttttctgtaga 895

                                        
Query: 510 cnataaagtccttnantagtaaggctcct 538
           | ||| || |||| | |||| ||||||||
Sbjct: 894 cgatatagaccttcagtagtgaggctcct 866
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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
              complete sequence
          Length = 163039

 Score =  115 bits (58), Expect = 2e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                          
Query: 241    cgtttctaatgccgataccaaagatgacgccaggaactgactgttggtagaaagcaaagt 300
              |||||||||| || || ||||| || || ||||||||| |||||||||||||||| ||||
Sbjct: 125742 cgtttctaataccaatgccaaacataactccaggaactaactgttggtagaaagcgaagt 125683

                                                                          
Query: 301    cttcccctgccatgatcttctccccgggcttcacattatccgggccaagcaatcttctgc 360
              |||| || ||||| |||||||| || |||||||| || || || ||||| |||| |||||
Sbjct: 125682 cttcgccagccataatcttctctcccggcttcaccttgtctggaccaagtaatcgtctgc 125623

                                                                          
Query: 361    ccacattctctatgtggcgatgcagcctctcatcattcacgacggcgggatacatcgggt 420
              ||||| | ||||  ||| |||||||  |||||||||| | ||| || |||||||| ||||
Sbjct: 125622 ccacagtttctacatggtgatgcagtttctcatcattaaagacagctggatacattgggt 125563

                
Query: 421    ag 422
              ||
Sbjct: 125562 ag 125561



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 450    cccttgcatctatgcacagctgcctgcccttctactacct 489
              ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 125536 cccttgcatctgtgcacagctgcctgcccttctaccacct 125497
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>dbj|AK102934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114I03, full
            insert sequence
          Length = 1488

 Score =  107 bits (54), Expect = 4e-20
 Identities = 150/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 241  cgtttctaatgccgataccaaagatgacgccaggaactgactgttggtagaaagcaaagt 300
            |||||||||| || || ||||| || || ||||||||| |||||||||||||||| ||||
Sbjct: 1184 cgtttctaataccaatgccaaacataactccaggaactaactgttggtagaaagcgaagt 1125

                                                                        
Query: 301  cttcccctgccatgatcttctccccgggcttcacattatccgggccaagcaatcttctgc 360
            |||| || ||||| |||||||| || |||||||| || || || ||||| |||| |||||
Sbjct: 1124 cttcgccagccataatcttctctcccggcttcaccttgtctggaccaagtaatcgtctgc 1065

                                                                        
Query: 361  ccacattctctatgtggcgatgcagcctctcatcattcacgacggcgggatacatcgggt 420
            ||||| | || |  ||| |||||||  |||||||||| | ||| || |||||||| ||||
Sbjct: 1064 ccacagtttccacatggtgatgcagtttctcatcattaaagacagctggatacattgggt 1005

              
Query: 421  ag 422
            ||
Sbjct: 1004 ag 1003



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                       
Query: 450 cccttgcatctatgcacagctgcctgcccttctactacctccttaagccttttctctagt 509
           ||||||||||| ||||||||||||||||||||||| |||||||| | |||||||| ||| 
Sbjct: 978 cccttgcatctgtgcacagctgcctgcccttctaccacctccttgacccttttctgtaga 919

                                        
Query: 510 cnataaagtccttnantagtaaggctcct 538
           | ||| || |||| | |||| ||||||||
Sbjct: 918 cgatatagaccttcagtagtgaggctcct 890
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>gb|BT013883.1| Lycopersicon esculentum clone 132864F, mRNA sequence
          Length = 1514

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 135  agatacatttctgcagtagcagtgtgcaacgcagctccaatgggaaggacatcctcgtc 193
            |||||||| |||||  | || |||||||  || |||||||| |||||||||||||||||
Sbjct: 1324 agatacatctctgctatggctgtgtgcattgctgctccaattggaaggacatcctcgtc 1266



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 459  ctatgcacagctgcctgcccttctactacctc 490
            ||||||||||||||||| ||||| | ||||||
Sbjct: 1003 ctatgcacagctgcctgtccttcaattacctc 972
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>gb|AY647432.1| Siniperca chuatsi virus-induced protein 5 mRNA, complete cds
          Length = 954

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 157 tgtgcaacgcagctccaatgg 177
           |||||||||||||||||||||
Sbjct: 422 tgtgcaacgcagctccaatgg 442
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>gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 195430

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 95    acacacccttccaacttcattttga 119
             ||||||||||| |||||||||||||
Sbjct: 56211 acacacccttctaacttcattttga 56187
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>gb|AC083868.3| Homo sapiens chromosome 7 clone RP11-148L5, complete sequence
          Length = 183541

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 350   caatcttctgcccacattctctatg 374
             ||||| |||||||||||||||||||
Sbjct: 89236 caatcctctgcccacattctctatg 89260
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>gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, complete sequence
          Length = 223516

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    gttttgtacactctcttcttatgg 66
             ||||||||| ||||||||||||||
Sbjct: 58959 gttttgtactctctcttcttatgg 58936
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>gb|AC167971.3| Mus musculus BAC clone RP24-439I22 from chromosome 7, complete sequence
          Length = 198057

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   gttggtagaaagcaaagtct 302
             ||||||||||||||||||||
Sbjct: 71344 gttggtagaaagcaaagtct 71325
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>gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete sequence
          Length = 155655

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   atcttctgcccacattctct 371
             ||||||||||||||||||||
Sbjct: 61748 atcttctgcccacattctct 61767
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>gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complete sequence
          Length = 155813

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    atcttctgcccacattctct 371
              ||||||||||||||||||||
Sbjct: 146477 atcttctgcccacattctct 146496
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>gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, complete sequence
          Length = 152130

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 487    cctccttaagccttttctct 506
              ||||||||||||||||||||
Sbjct: 147517 cctccttaagccttttctct 147498
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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    cccctgccatgatcttctcc 323
              ||||||||||||||||||||
Sbjct: 818805 cccctgccatgatcttctcc 818824
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>gb|AC021542.8| Homo sapiens chromosome 15, clone RP11-507B12, complete sequence
          Length = 80114

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   cctccttaagccttttctct 506
             ||||||||||||||||||||
Sbjct: 23628 cctccttaagccttttctct 23647
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>dbj|AK018028.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830462N02 product:unclassifiable, full
           insert sequence
          Length = 1496

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 gttggtagaaagcaaagtct 302
           ||||||||||||||||||||
Sbjct: 497 gttggtagaaagcaaagtct 516
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>gb|AC155263.2| Mus musculus BAC clone RP23-415I11 from chromosome 13, complete sequence
          Length = 202801

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ggaactgactgttggtagaa 292
              ||||||||||||||||||||
Sbjct: 124842 ggaactgactgttggtagaa 124823


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,618,908
Number of Sequences: 3902068
Number of extensions: 3618908
Number of successful extensions: 58045
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57990
Number of HSP's gapped (non-prelim): 55
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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