ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL31_NICGU (P46290) 60S ribosomal protein L31 57 2e-08
2RL312_ARATH (P51420) 60S ribosomal protein L31-2 54 2e-07
3RL31_PICMA (O65071) 60S ribosomal protein L31 54 2e-07
4RL311_ARATH (Q9STR1) 60S ribosomal protein L31-1 53 2e-07
5RL31_PERFR (Q9M573) 60S ribosomal protein L31 52 4e-07
6RL31_PANGI (Q9MAV7) 60S ribosomal protein L31 47 2e-05
7RL31_CHLRE (P45841) 60S ribosomal protein L31 35 0.060
8RL31_CYAPA (Q9XGL4) 60S ribosomal protein L31 31 0.86

>RL31_NICGU (P46290) 60S ribosomal protein L31|
          Length = 120

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 25/30 (83%), Positives = 30/30 (100%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKEELYSLVTVAE+PA+GLKGLGTK++
Sbjct: 87  DEDAKEELYSLVTVAEIPAKGLKGLGTKII 116



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>RL312_ARATH (P51420) 60S ribosomal protein L31-2|
          Length = 119

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKEE +SLVTVAE+PAEGL GLGTKV+
Sbjct: 86  DEDAKEEFFSLVTVAEIPAEGLSGLGTKVI 115



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>RL31_PICMA (O65071) 60S ribosomal protein L31|
          Length = 120

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           EEDAK+ELYS+VTVAEVP EGL GLGTK++
Sbjct: 87  EEDAKDELYSIVTVAEVPPEGLTGLGTKII 116



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>RL311_ARATH (Q9STR1) 60S ribosomal protein L31-1|
          Length = 119

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKEE +SLVTVAE+PAEGL GLGTK++
Sbjct: 86  DEDAKEEFFSLVTVAEIPAEGLSGLGTKII 115



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>RL31_PERFR (Q9M573) 60S ribosomal protein L31|
          Length = 121

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKEELYSLVTVAE+P  GLKGLGT+V+
Sbjct: 88  DEDAKEELYSLVTVAEIPEGGLKGLGTQVI 117



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>RL31_PANGI (Q9MAV7) 60S ribosomal protein L31|
          Length = 121

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 21/30 (70%), Positives = 27/30 (90%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKEELYSLVTVA++PA  LKGLG +++
Sbjct: 87  DEDAKEELYSLVTVAKIPAGTLKGLGPQII 116



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>RL31_CHLRE (P45841) 60S ribosomal protein L31|
          Length = 116

 Score = 35.0 bits (79), Expect = 0.060
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKEE+YS VTVAE   +  KG GT VV
Sbjct: 86  DEDAKEEMYSFVTVAE--DQSTKGKGTVVV 113



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>RL31_CYAPA (Q9XGL4) 60S ribosomal protein L31|
          Length = 119

 Score = 31.2 bits (69), Expect = 0.86
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -1

Query: 91  EEDAKEELYSLVTVAEVPAEGLKGLGTKVV 2
           +EDAKE+LY+LVT   VP    KGL T+ V
Sbjct: 89  DEDAKEKLYTLVTY--VPVTSFKGLQTQNV 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,484,187
Number of Sequences: 219361
Number of extensions: 115477
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 80,573,946
effective HSP length: 6
effective length of database: 79,257,780
effective search space used: 1902186720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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