ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8i02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483237.1| Oryza sativa (japonica cultivar-group), mRNA 109 1e-21
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-21
3dbj|D29722.1|RICYK35 Oryza sativa mRNA, partial homologous to ri... 109 1e-21
4dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-21
5dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-21
6ref|XM_467485.1| Oryza sativa (japonica cultivar-group), mRNA 84 8e-14
7gb|AY754699.1| Zea mays putative 60S ribosomal protein L31 mRNA,... 84 8e-14
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 8e-14
9dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 84 8e-14
10dbj|AK105284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 8e-14
11gb|AY109515.1| Zea mays CL253_10 mRNA sequence 82 3e-13
12gb|BT014565.1| Lycopersicon esculentum clone 134019R, mRNA sequence 66 2e-08
13emb|AJ417520.1|OSA417520 Oryza sativa partial mRNA for ribosomal... 62 3e-07
14dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-06
15dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-06
16dbj|AK120884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-06
17gb|DQ122871.1| Chlamydomonas incerta 60S ribosomal protein L31 m... 52 3e-04
18emb|X66413.1|CRRIBPL31 C.reinhardtii mRNA for ribosomal protein L31 52 3e-04
19gb|AY109331.1| Zea mays CL253_2 mRNA sequence 48 0.004
20dbj|AB226042.1| Aspergillus oryzae cDNA, contig sequence: AoEST2898 44 0.066
21dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 44 0.066
22gb|AF457941.1| Zea mays clone cho1c.pk002.n14, mRNA sequence 44 0.066
23gb|AC147381.3| Pan troglodytes BAC clone RP43-162H15 from 7, com... 42 0.26
24gb|AC147070.5| Homo sapiens chromosome 4 clone RP13-1008F15, com... 42 0.26
25gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, compl... 42 0.26
26gb|AC073127.11| Homo sapiens BAC clone RP11-645N11 from 7, compl... 42 0.26
27gb|AC026477.3| Homo sapiens chromosome 5 clone RP11-94D20, compl... 42 0.26
28gb|AC100812.2| Homo sapiens chromosome 8, clone CTD-2532N20, com... 42 0.26
29gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, compl... 42 0.26
30gb|AC096768.3| Homo sapiens BAC clone RP11-722P15 from 4, comple... 42 0.26
31gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, comple... 42 0.26
32dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 0.26
33emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-2... 42 0.26
34gb|AC107884.15| Homo sapiens chromosome 11, clone CTD-2516F10, c... 42 0.26
35dbj|AP001629.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 42 0.26
36gb|BT017600.1| Zea mays clone EL01N0431G10.c mRNA sequence 40 1.0
37ref|XM_501163.1| Yarrowia lipolytica CLIB122, YALI0B21032g predi... 40 1.0
38gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, compl... 40 1.0
39gb|AC016405.8|AC016405 Homo sapiens, clone RP11-44N11, complete ... 40 1.0
40gb|AY103830.2| Zea mays PCO109717 mRNA sequence 40 1.0
41emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 1.0
42gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome... 38 4.1
43ref|XM_871846.1| PREDICTED: Bos taurus similar to potassium chan... 38 4.1
44emb|BX842630.1| Neurospora crassa DNA linkage group I BAC contig... 38 4.1
45emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chr... 38 4.1
46emb|AJ421478.1| Mus musculus X-inactivation center region; segme... 38 4.1
47gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, comple... 38 4.1
48ref|NR_001562.1| Homo sapiens annexin A2 pseudogene 1 (ANXA2P1) ... 38 4.1
49gb|AC153620.4| Mus musculus 6 BAC RP23-326P16 (Roswell Park Canc... 38 4.1
50dbj|AP006691.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 4.1
51emb|AL671187.9| Mouse DNA sequence from clone RP23-273N4 on chro... 38 4.1
52gb|M62896.1|HUMLIP2B Human lipocortin (LIP) 2 pseudogene mRNA, c... 38 4.1 
>ref|XM_483237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 369

 Score =  109 bits (55), Expect = 1e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                       
Query: 6   accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
           ||||||||||||||||||||||||||||||| ||| |||||||| || ||||| || |||
Sbjct: 350 accttggttcccagccccttcaaaccctcaggagggacctcggccacagtgaccagagag 291

                                      
Query: 66  tagagctcctccttggcgtcctcctcg 92
           |||||||| |||||||| |||||||||
Sbjct: 290 tagagctcttccttggcatcctcctcg 264
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  109 bits (55), Expect = 1e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 6        accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
                ||||||||||||||||||||||||||||||| ||| |||||||| || ||||| || |||
Sbjct: 24985982 accttggttcccagccccttcaaaccctcaggagggacctcggccacagtgaccagagag 24986041

                                           
Query: 66       tagagctcctccttggcgtcctcctcg 92
                |||||||| |||||||| |||||||||
Sbjct: 24986042 tagagctcttccttggcatcctcctcg 24986068
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>dbj|D29722.1|RICYK35 Oryza sativa mRNA, partial homologous to ribosomal protein L31 gene
          Length = 325

 Score =  109 bits (55), Expect = 1e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                       
Query: 6   accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
           ||||||||||||||||||||||||||||||| ||| |||||||| || ||||| || |||
Sbjct: 183 accttggttcccagccccttcaaaccctcaggagggacctcggccacagtgaccagagag 124

                                      
Query: 66  tagagctcctccttggcgtcctcctcg 92
           |||||||| |||||||| |||||||||
Sbjct: 123 tagagctcttccttggcatcctcctcg 97
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>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0025J22
          Length = 175355

 Score =  109 bits (55), Expect = 1e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                         
Query: 6     accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
             ||||||||||||||||||||||||||||||| ||| |||||||| || ||||| || |||
Sbjct: 42098 accttggttcccagccccttcaaaccctcaggagggacctcggccacagtgaccagagag 42157

                                        
Query: 66    tagagctcctccttggcgtcctcctcg 92
             |||||||| |||||||| |||||||||
Sbjct: 42158 tagagctcttccttggcatcctcctcg 42184
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>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_H03
          Length = 135914

 Score =  109 bits (55), Expect = 1e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                         
Query: 6     accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
             ||||||||||||||||||||||||||||||| ||| |||||||| || ||||| || |||
Sbjct: 87697 accttggttcccagccccttcaaaccctcaggagggacctcggccacagtgaccagagag 87756

                                        
Query: 66    tagagctcctccttggcgtcctcctcg 92
             |||||||| |||||||| |||||||||
Sbjct: 87757 tagagctcttccttggcatcctcctcg 87783
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>ref|XM_467485.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 372

 Score = 83.8 bits (42), Expect = 8e-14
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                       
Query: 6   accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
           |||||||||||||  ||||| | |||||| ||||| | ||| ||||| ||||| || |||
Sbjct: 353 accttggttcccaaacccttgagaccctctgcagggatctcagcaactgtgaccagagag 294

                                     
Query: 66  tagagctcctccttggcgtcctcctc 91
           ||||||||||||||||||||||||||
Sbjct: 293 tagagctcctccttggcgtcctcctc 268
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>gb|AY754699.1| Zea mays putative 60S ribosomal protein L31 mRNA, complete cds
          Length = 595

 Score = 83.8 bits (42), Expect = 8e-14
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                       
Query: 3   acgaccttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagt 62
           ||||||||||| |||||||| ||||| ||||| || || | ||| || |||||||| || 
Sbjct: 368 acgaccttggtccccagccctttcaagccctcggcggggatctccgcgacggtgacaagg 309

                                         
Query: 63  gagtagagctcctccttggcgtcctcctcg 92
           |||||||||||||||||||| |||||||||
Sbjct: 308 gagtagagctcctccttggcatcctcctcg 279
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 83.8 bits (42), Expect = 8e-14
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                            
Query: 6        accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
                |||||||||||||  ||||| | |||||| ||||| | ||| ||||| ||||| || |||
Sbjct: 29814218 accttggttcccaaacccttgagaccctctgcagggatctcagcaactgtgaccagagag 29814277

                                          
Query: 66       tagagctcctccttggcgtcctcctc 91
                ||||||||||||||||||||||||||
Sbjct: 29814278 tagagctcctccttggcgtcctcctc 29814303
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 83.8 bits (42), Expect = 8e-14
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                         
Query: 6     accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
             |||||||||||||  ||||| | |||||| ||||| | ||| ||||| ||||| || |||
Sbjct: 70563 accttggttcccaaacccttgagaccctctgcagggatctcagcaactgtgaccagagag 70622

                                       
Query: 66    tagagctcctccttggcgtcctcctc 91
             ||||||||||||||||||||||||||
Sbjct: 70623 tagagctcctccttggcgtcctcctc 70648
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>dbj|AK105284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E05, full
            insert sequence
          Length = 2274

 Score = 83.8 bits (42), Expect = 8e-14
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 6    accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
            |||||||||||||  ||||| | |||||| ||||| | ||| ||||| ||||| || |||
Sbjct: 1514 accttggttcccaaacccttgagaccctctgcagggatctcagcaactgtgaccagagag 1455

                                      
Query: 66   tagagctcctccttggcgtcctcctc 91
            ||||||||||||||||||||||||||
Sbjct: 1454 tagagctcctccttggcgtcctcctc 1429
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>gb|AY109515.1| Zea mays CL253_10 mRNA sequence
          Length = 654

 Score = 81.8 bits (41), Expect = 3e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 3   acgaccttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagt 62
           ||||||||||| |||||||| ||||| ||||| ||||| | ||| || |||||||| || 
Sbjct: 233 acgaccttggtccccagccctttcaagccctcggcagggatctccgcgacggtgacaagg 292

                                        
Query: 63  gagtagagctcctccttggcgtcctcctc 91
           |||||||| ||||||||||| ||||||||
Sbjct: 293 gagtagagttcctccttggcatcctcctc 321
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>gb|BT014565.1| Lycopersicon esculentum clone 134019R, mRNA sequence
          Length = 643

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                       
Query: 8   cttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgagta 67
           |||||| || || ||||||||||||||||| || | ||| ||||| ||||| || |||||
Sbjct: 445 cttggtaccaagacccttcaaaccctcagctgggatctctgcaacagtgacaagagagta 386

                                
Query: 68  gagctcctccttggcgtcctc 88
           |||||| ||||| ||||||||
Sbjct: 385 gagctcttcctttgcgtcctc 365
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>emb|AJ417520.1|OSA417520 Oryza sativa partial mRNA for ribosomal protein L31 (xd5 gene)
          Length = 325

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                      
Query: 6  accttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgag 65
          |||||||||||||  ||||| | |||||| ||||| ||||| ||||| ||||| || |||
Sbjct: 71 accttggttcccaaacccttgagaccctctgcagggacctcagcaactgtgaccagagag 12

                     
Query: 66 tagagctcctc 76
          |||||||||||
Sbjct: 11 tagagctcctc 1
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 4e-06
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                            
Query: 8        cttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgagta 67
                |||||| ||||| |||||||| |||||    || ||||| ||||| ||||| || |||||
Sbjct: 12257772 cttggtacccaggcccttcaacccctcttggggaacctcagcaacagtgaccagagagta 12257713

                                         
Query: 68       gagctcctccttggcgtcctcctcg 92
                |||||||||||| || |||||||||
Sbjct: 12257712 gagctcctccttcgcatcctcctcg 12257688
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>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592B08
          Length = 131096

 Score = 58.0 bits (29), Expect = 4e-06
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                         
Query: 8     cttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgagta 67
             |||||| ||||| |||||||| |||||    || ||||| ||||| ||||| || |||||
Sbjct: 94794 cttggtacccaggcccttcaacccctcttggggaacctcagcaacagtgaccagagagta 94735

                                      
Query: 68    gagctcctccttggcgtcctcctcg 92
             |||||||||||| || |||||||||
Sbjct: 94734 gagctcctccttcgcatcctcctcg 94710
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>dbj|AK120884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028N24, full
           insert sequence
          Length = 811

 Score = 58.0 bits (29), Expect = 4e-06
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                       
Query: 8   cttggttcccagccccttcaaaccctcagcaggcacctcggcaacggtgacgagtgagta 67
           |||||| ||||| |||||||| |||||    || ||||| ||||| ||||| || |||||
Sbjct: 445 cttggtacccaggcccttcaacccctcttggggaacctcagcaacagtgaccagagagta 386

                                    
Query: 68  gagctcctccttggcgtcctcctcg 92
           |||||||||||| || |||||||||
Sbjct: 385 gagctcctccttcgcatcctcctcg 361
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>gb|DQ122871.1| Chlamydomonas incerta 60S ribosomal protein L31 mRNA, complete cds
          Length = 419

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 43  cctcggcaacggtgacgagtgagtagagctcctccttggcgtcctc 88
           ||||||||||||| ||||  ||||| | ||||||||||||||||||
Sbjct: 322 cctcggcaacggtcacgaacgagtacatctcctccttggcgtcctc 277
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>emb|X66413.1|CRRIBPL31 C.reinhardtii mRNA for ribosomal protein L31
          Length = 383

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 43  cctcggcaacggtgacgagtgagtagagctcctccttggcgtcctc 88
           ||||||||||||| ||||  ||||| | ||||||||||||||||||
Sbjct: 324 cctcggcaacggtcacgaacgagtacatctcctccttggcgtcctc 279
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>gb|AY109331.1| Zea mays CL253_2 mRNA sequence
          Length = 2256

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 48  gcaacggtgacgagtgagtagagctcctccttggcgtcctcctc 91
           ||||| ||||| || |||||||| |||||||||||||| |||||
Sbjct: 278 gcaactgtgaccagagagtagagttcctccttggcgtcttcctc 321
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>dbj|AB226042.1| Aspergillus oryzae cDNA, contig sequence: AoEST2898
          Length = 630

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 63  gagtagagctcctccttggcgtcctcctcg 92
           |||||||||| ||||||||||| |||||||
Sbjct: 372 gagtagagcttctccttggcgttctcctcg 343
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 63      gagtagagctcctccttggcgtcctcctcg 92
               |||||||||| ||||||||||| |||||||
Sbjct: 1198139 gagtagagcttctccttggcgttctcctcg 1198110
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>gb|AF457941.1| Zea mays clone cho1c.pk002.n14, mRNA sequence
          Length = 387

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 54  gtgacgagtgagtagagctcctccttggcgtcctcctc 91
           ||||| || |||||||| |||||||||||||| |||||
Sbjct: 166 gtgaccagggagtagagttcctccttggcgtcttcctc 129
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>gb|AC147381.3| Pan troglodytes BAC clone RP43-162H15 from 7, complete sequence
          Length = 162222

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 82467 ccccttcaaaccctcagcagg 82447
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>gb|AC147070.5| Homo sapiens chromosome 4 clone RP13-1008F15, complete sequence
          Length = 153296

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     ccccttcaaaccctcagcagg 40
              |||||||||||||||||||||
Sbjct: 131749 ccccttcaaaccctcagcagg 131729
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>gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, complete sequence
          Length = 184963

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 35507 ccccttcaaaccctcagcagg 35527
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>gb|AC073127.11| Homo sapiens BAC clone RP11-645N11 from 7, complete sequence
          Length = 155842

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 51047 ccccttcaaaccctcagcagg 51067
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>gb|AC026477.3| Homo sapiens chromosome 5 clone RP11-94D20, complete sequence
          Length = 70380

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 54094 ccccttcaaaccctcagcagg 54074
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>gb|AC100812.2| Homo sapiens chromosome 8, clone CTD-2532N20, complete sequence
          Length = 209123

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 20     ccccttcaaaccctcagcagg 40
              |||||||||||||||||||||
Sbjct: 101423 ccccttcaaaccctcagcagg 101443
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>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence
          Length = 212426

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 56064 ccccttcaaaccctcagcagg 56084
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>gb|AC096768.3| Homo sapiens BAC clone RP11-722P15 from 4, complete sequence
          Length = 180430

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     ccccttcaaaccctcagcagg 40
              |||||||||||||||||||||
Sbjct: 126583 ccccttcaaaccctcagcagg 126563
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>gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, complete sequence
          Length = 96776

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 43509 ccccttcaaaccctcagcagg 43529
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>dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, section 92/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 79984 ccccttcaaaccctcagcagg 79964
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>emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-219E7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162472

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 87263 ccccttcaaaccctcagcagg 87243
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>gb|AC107884.15| Homo sapiens chromosome 11, clone CTD-2516F10, complete sequence
          Length = 177416

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 69783 ccccttcaaaccctcagcagg 69803
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>dbj|AP001629.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1405B7, MX1-D21S171
             region, complete sequence
          Length = 89436

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ccccttcaaaccctcagcagg 40
             |||||||||||||||||||||
Sbjct: 74123 ccccttcaaaccctcagcagg 74103
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>gb|BT017600.1| Zea mays clone EL01N0431G10.c mRNA sequence
          Length = 533

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 48  gcaacggtgacgagtgagtagagctcctccttggcgtcctcctc 91
           |||||||| || || ||||| ||||| ||||||||||| |||||
Sbjct: 309 gcaacggtaacaagagagtaaagctcttccttggcgtcttcctc 266
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>ref|XM_501163.1| Yarrowia lipolytica CLIB122, YALI0B21032g predicted mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  ctcctccttggcgtcctcct 90
           ||||||||||||||||||||
Sbjct: 915 ctcctccttggcgtcctcct 896
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>gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, complete sequence
          Length = 112659

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cccttcaaaccctcagcagg 40
             ||||||||||||||||||||
Sbjct: 52843 cccttcaaaccctcagcagg 52862
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>gb|AC016405.8|AC016405 Homo sapiens, clone RP11-44N11, complete sequence
          Length = 159153

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ccccttcaaaccctcagcag 39
             ||||||||||||||||||||
Sbjct: 60993 ccccttcaaaccctcagcag 61012
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>gb|AY103830.2| Zea mays PCO109717 mRNA sequence
          Length = 705

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 48  gcaacggtgacgagtgagtagagctcctccttggcgtcctcctc 91
           |||||||| || || ||||| ||||| ||||||||||| |||||
Sbjct: 360 gcaacggtaacaagagagtaaagctcttccttggcgtcttcctc 317
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 71      ctcctccttggcgtcctcct 90
               ||||||||||||||||||||
Sbjct: 2765993 ctcctccttggcgtcctcct 2766012
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>gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome 10, complete sequence
          Length = 189789

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    ccttcaaaccctcagcagg 40
             |||||||||||||||||||
Sbjct: 35619 ccttcaaaccctcagcagg 35601
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>ref|XM_871846.1| PREDICTED: Bos taurus similar to potassium channel modulatory factor
            1, transcript variant 3 (LOC613522), mRNA
          Length = 2548

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   tcccagccccttcaaaccc 32
            |||||||||||||||||||
Sbjct: 1915 tcccagccccttcaaaccc 1897
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>emb|BX842630.1| Neurospora crassa DNA linkage group I BAC contig B13D15
          Length = 127789

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     ggttcccagccccttcaaa 29
              |||||||||||||||||||
Sbjct: 106439 ggttcccagccccttcaaa 106421
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>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the
             5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase,
             the 3' end of a novel gene and a CpG island, complete
             sequence
          Length = 193914

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     cttggttcccagccccttc 26
             |||||||||||||||||||
Sbjct: 85949 cttggttcccagccccttc 85967
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>emb|AJ421478.1| Mus musculus X-inactivation center region; segment 1/3
          Length = 247850

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      ttggttcccagccccttca 27
              |||||||||||||||||||
Sbjct: 116092 ttggttcccagccccttca 116074
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>gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, complete sequence
          Length = 182092

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     ttggttcccagccccttca 27
             |||||||||||||||||||
Sbjct: 49603 ttggttcccagccccttca 49621
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>ref|NR_001562.1| Homo sapiens annexin A2 pseudogene 1 (ANXA2P1) on chromosome 4
          Length = 1342

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   ttggttcccagccccttca 27
           |||||||||||||||||||
Sbjct: 418 ttggttcccagccccttca 400
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>gb|AC153620.4| Mus musculus 6 BAC RP23-326P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 194383

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     ccagccccttcaaaccctc 34
              |||||||||||||||||||
Sbjct: 154795 ccagccccttcaaaccctc 154777
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>dbj|AP006691.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT14J20, TM0388b,
             complete sequence
          Length = 72414

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    cctccttggcgtcctcctc 91
             |||||||||||||||||||
Sbjct: 25099 cctccttggcgtcctcctc 25117
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>emb|AL671187.9| Mouse DNA sequence from clone RP23-273N4 on chromosome X, complete
             sequence
          Length = 205749

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     ttggttcccagccccttca 27
             |||||||||||||||||||
Sbjct: 54735 ttggttcccagccccttca 54753
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>gb|M62896.1|HUMLIP2B Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region
          Length = 1342

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   ttggttcccagccccttca 27
           |||||||||||||||||||
Sbjct: 418 ttggttcccagccccttca 400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 648,160
Number of Sequences: 3902068
Number of extensions: 648160
Number of successful extensions: 43546
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43401
Number of HSP's gapped (non-prelim): 145
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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